data_5BYD # _model_server_result.job_id 2Kk4Ecm7496s-zU8o2qRbA _model_server_result.datetime_utc '2024-10-19 05:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5byd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5BYD # _exptl.entry_id 5BYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.8 _cell.angle_gamma 90 _cell.entry_id 5BYD _cell.length_a 46.59 _cell.length_b 89.91 _cell.length_c 75.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 263 A ASP 263 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc2 A O SER 301 A SER 301 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 A O ALA 304 A ALA 304 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 A OG SER 310 A SER 310 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc5 C NA NA . A NA 401 1_555 E O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 C NA NA . A NA 401 1_555 E O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 B O ASP 263 B ASP 263 1_555 D K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 B O THR 265 B THR 265 1_555 D K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.41 ? metalc ? metalc9 B O SER 301 B SER 301 1_555 D K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 B O ALA 304 B ALA 304 1_555 D K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc11 B O GLY 306 B GLY 306 1_555 D K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc12 B OG SER 310 B SER 310 1_555 D K K . B K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc13 D K K . B K 401 1_555 F O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BYD _atom_sites.fract_transf_matrix[1][1] 0.021464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003323 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 3 K B 1 401 1 K K . E 4 HOH A 1 501 90 HOH HOH . E 4 HOH A 2 502 109 HOH HOH . E 4 HOH A 3 503 33 HOH HOH . E 4 HOH A 4 504 85 HOH HOH . E 4 HOH A 5 505 77 HOH HOH . E 4 HOH A 6 506 28 HOH HOH . E 4 HOH A 7 507 39 HOH HOH . E 4 HOH A 8 508 123 HOH HOH . E 4 HOH A 9 509 30 HOH HOH . E 4 HOH A 10 510 61 HOH HOH . E 4 HOH A 11 511 108 HOH HOH . E 4 HOH A 12 512 72 HOH HOH . E 4 HOH A 13 513 118 HOH HOH . E 4 HOH A 14 514 21 HOH HOH . E 4 HOH A 15 515 44 HOH HOH . E 4 HOH A 16 516 88 HOH HOH . E 4 HOH A 17 517 106 HOH HOH . E 4 HOH A 18 518 91 HOH HOH . E 4 HOH A 19 519 126 HOH HOH . E 4 HOH A 20 520 63 HOH HOH . E 4 HOH A 21 521 74 HOH HOH . E 4 HOH A 22 522 7 HOH HOH . E 4 HOH A 23 523 65 HOH HOH . E 4 HOH A 24 524 125 HOH HOH . E 4 HOH A 25 525 100 HOH HOH . E 4 HOH A 26 526 17 HOH HOH . E 4 HOH A 27 527 16 HOH HOH . E 4 HOH A 28 528 76 HOH HOH . E 4 HOH A 29 529 110 HOH HOH . E 4 HOH A 30 530 5 HOH HOH . E 4 HOH A 31 531 22 HOH HOH . E 4 HOH A 32 532 87 HOH HOH . E 4 HOH A 33 533 92 HOH HOH . E 4 HOH A 34 534 8 HOH HOH . E 4 HOH A 35 535 23 HOH HOH . E 4 HOH A 36 536 42 HOH HOH . E 4 HOH A 37 537 32 HOH HOH . E 4 HOH A 38 538 107 HOH HOH . E 4 HOH A 39 539 103 HOH HOH . E 4 HOH A 40 540 117 HOH HOH . E 4 HOH A 41 541 36 HOH HOH . E 4 HOH A 42 542 75 HOH HOH . E 4 HOH A 43 543 9 HOH HOH . E 4 HOH A 44 544 98 HOH HOH . E 4 HOH A 45 545 132 HOH HOH . E 4 HOH A 46 546 47 HOH HOH . E 4 HOH A 47 547 26 HOH HOH . E 4 HOH A 48 548 93 HOH HOH . E 4 HOH A 49 549 127 HOH HOH . E 4 HOH A 50 550 2 HOH HOH . E 4 HOH A 51 551 14 HOH HOH . E 4 HOH A 52 552 78 HOH HOH . E 4 HOH A 53 553 13 HOH HOH . E 4 HOH A 54 554 95 HOH HOH . E 4 HOH A 55 555 73 HOH HOH . E 4 HOH A 56 556 27 HOH HOH . E 4 HOH A 57 557 86 HOH HOH . E 4 HOH A 58 558 111 HOH HOH . E 4 HOH A 59 559 41 HOH HOH . E 4 HOH A 60 560 128 HOH HOH . E 4 HOH A 61 561 1 HOH HOH . E 4 HOH A 62 562 67 HOH HOH . E 4 HOH A 63 563 89 HOH HOH . E 4 HOH A 64 564 43 HOH HOH . E 4 HOH A 65 565 130 HOH HOH . E 4 HOH A 66 566 102 HOH HOH . E 4 HOH A 67 567 114 HOH HOH . E 4 HOH A 68 568 82 HOH HOH . E 4 HOH A 69 569 38 HOH HOH . E 4 HOH A 70 570 112 HOH HOH . E 4 HOH A 71 571 70 HOH HOH . E 4 HOH A 72 572 97 HOH HOH . E 4 HOH A 73 573 104 HOH HOH . E 4 HOH A 74 574 71 HOH HOH . E 4 HOH A 75 575 113 HOH HOH . E 4 HOH A 76 576 105 HOH HOH . E 4 HOH A 77 577 131 HOH HOH . E 4 HOH A 78 578 99 HOH HOH . E 4 HOH A 79 579 40 HOH HOH . E 4 HOH A 80 580 34 HOH HOH . E 4 HOH A 81 581 124 HOH HOH . E 4 HOH A 82 582 50 HOH HOH . E 4 HOH A 83 583 120 HOH HOH . E 4 HOH A 84 584 101 HOH HOH . E 4 HOH A 85 585 96 HOH HOH . E 4 HOH A 86 586 115 HOH HOH . E 4 HOH A 87 587 129 HOH HOH . E 4 HOH A 88 588 121 HOH HOH . E 4 HOH A 89 589 119 HOH HOH . F 4 HOH B 1 501 52 HOH HOH . F 4 HOH B 2 502 133 HOH HOH . F 4 HOH B 3 503 20 HOH HOH . F 4 HOH B 4 504 145 HOH HOH . F 4 HOH B 5 505 54 HOH HOH . F 4 HOH B 6 506 155 HOH HOH . F 4 HOH B 7 507 69 HOH HOH . F 4 HOH B 8 508 139 HOH HOH . F 4 HOH B 9 509 149 HOH HOH . F 4 HOH B 10 510 6 HOH HOH . F 4 HOH B 11 511 19 HOH HOH . F 4 HOH B 12 512 15 HOH HOH . F 4 HOH B 13 513 94 HOH HOH . F 4 HOH B 14 514 62 HOH HOH . F 4 HOH B 15 515 81 HOH HOH . F 4 HOH B 16 516 116 HOH HOH . F 4 HOH B 17 517 56 HOH HOH . F 4 HOH B 18 518 10 HOH HOH . F 4 HOH B 19 519 68 HOH HOH . F 4 HOH B 20 520 31 HOH HOH . F 4 HOH B 21 521 64 HOH HOH . F 4 HOH B 22 522 153 HOH HOH . F 4 HOH B 23 523 135 HOH HOH . F 4 HOH B 24 524 35 HOH HOH . F 4 HOH B 25 525 24 HOH HOH . F 4 HOH B 26 526 11 HOH HOH . F 4 HOH B 27 527 134 HOH HOH . F 4 HOH B 28 528 4 HOH HOH . F 4 HOH B 29 529 148 HOH HOH . F 4 HOH B 30 530 58 HOH HOH . F 4 HOH B 31 531 151 HOH HOH . F 4 HOH B 32 532 122 HOH HOH . F 4 HOH B 33 533 18 HOH HOH . F 4 HOH B 34 534 143 HOH HOH . F 4 HOH B 35 535 147 HOH HOH . F 4 HOH B 36 536 49 HOH HOH . F 4 HOH B 37 537 3 HOH HOH . F 4 HOH B 38 538 37 HOH HOH . F 4 HOH B 39 539 138 HOH HOH . F 4 HOH B 40 540 150 HOH HOH . F 4 HOH B 41 541 79 HOH HOH . F 4 HOH B 42 542 51 HOH HOH . F 4 HOH B 43 543 84 HOH HOH . F 4 HOH B 44 544 146 HOH HOH . F 4 HOH B 45 545 29 HOH HOH . F 4 HOH B 46 546 80 HOH HOH . F 4 HOH B 47 547 46 HOH HOH . F 4 HOH B 48 548 25 HOH HOH . F 4 HOH B 49 549 140 HOH HOH . F 4 HOH B 50 550 48 HOH HOH . F 4 HOH B 51 551 141 HOH HOH . F 4 HOH B 52 552 154 HOH HOH . F 4 HOH B 53 553 66 HOH HOH . F 4 HOH B 54 554 83 HOH HOH . F 4 HOH B 55 555 55 HOH HOH . F 4 HOH B 56 556 59 HOH HOH . F 4 HOH B 57 557 53 HOH HOH . F 4 HOH B 58 558 60 HOH HOH . F 4 HOH B 59 559 12 HOH HOH . F 4 HOH B 60 560 57 HOH HOH . F 4 HOH B 61 561 144 HOH HOH . F 4 HOH B 62 562 136 HOH HOH . F 4 HOH B 63 563 152 HOH HOH . F 4 HOH B 64 564 45 HOH HOH . F 4 HOH B 65 565 137 HOH HOH . F 4 HOH B 66 566 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.309 _atom_site.Cartn_y 3.904 _atom_site.Cartn_z -1.491 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #