data_5BYN
#
_model_server_result.job_id            9VSKKjkrrod1Hdc20iEd4w 
_model_server_result.datetime_utc      '2025-01-10 21:46:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5byn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":305}' 
#
_entry.id    5BYN 
#
_exptl.entry_id    5BYN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5BYN 
_cell.length_a            190.64 
_cell.length_b            190.64 
_cell.length_c            190.64 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BYN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        196 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 8 A GLU 8 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc8 A NE2 HIS 24 A HIS 24 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc9 A OE1 GLU 87 A GLU 87 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc10 A OE2 GLU 87 A GLU 87 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc11 C CA CA . A CA 301 1_555 N O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc12 C CA CA . A CA 301 1_555 N O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc13 D MN MN . A MN 302 1_555 N O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc14 D MN MN . A MN 302 1_555 N O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? 
metalc ? metalc15 E CD CD . A CD 303 1_555 N O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc16 E CD CD . A CD 303 1_555 N O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc17 B OE1 GLU 8 B GLU 8 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc18 B OD1 ASP 10 B ASP 10 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc19 B OD2 ASP 10 B ASP 10 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc20 B OD2 ASP 10 B ASP 10 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc21 B O TYR 12 B TYR 12 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc22 B OD2 ASP 19 B ASP 19 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc23 B OD1 ASP 19 B ASP 19 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc24 B NE2 HIS 24 B HIS 24 1_555 K MN MN . B MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc25 J CA CA . B CA 302 1_555 O O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc26 J CA CA . B CA 302 1_555 O O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc27 K MN MN . B MN 303 1_555 O O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc28 K MN MN . B MN 303 1_555 O O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 123 n n 
C1 C2 EDO sing 124 n n 
C1 H11 EDO sing 125 n n 
C1 H12 EDO sing 126 n n 
O1 HO1 EDO sing 127 n n 
C2 O2 EDO sing 128 n n 
C2 H21 EDO sing 129 n n 
C2 H22 EDO sing 130 n n 
O2 HO2 EDO sing 131 n n 
#
_atom_sites.entry_id                     5BYN 
_atom_sites.fract_transf_matrix[1][1]    0.005245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005245 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 301 238 CA CA . 
D 3 MN A 1 302 239 MN MN . 
E 4 CD A 1 303 240 CD CD . 
F 5 PEG A 1 304 242 PEG PEG . 
G 6 EDO A 1 305 243 EDO EDO . 
H 7 4WM A 1 306 240 4WM 4WM . 
I 7 4WM B 1 301 241 4WM 4WM . 
J 2 CA B 1 302 238 CA CA . 
K 3 MN B 1 303 239 MN MN . 
L 6 EDO B 1 304 241 EDO EDO . 
M 6 EDO B 1 305 242 EDO EDO . 
N 8 HOH A 1 401 23 HOH HOH . 
N 8 HOH A 2 402 12 HOH HOH . 
N 8 HOH A 3 403 50 HOH HOH . 
N 8 HOH A 4 404 53 HOH HOH . 
N 8 HOH A 5 405 17 HOH HOH . 
N 8 HOH A 6 406 49 HOH HOH . 
N 8 HOH A 7 407 1 HOH HOH . 
N 8 HOH A 8 408 47 HOH HOH . 
N 8 HOH A 9 409 60 HOH HOH . 
N 8 HOH A 10 410 65 HOH HOH . 
N 8 HOH A 11 411 59 HOH HOH . 
N 8 HOH A 12 412 48 HOH HOH . 
N 8 HOH A 13 413 8 HOH HOH . 
N 8 HOH A 14 414 2 HOH HOH . 
N 8 HOH A 15 415 61 HOH HOH . 
N 8 HOH A 16 416 24 HOH HOH . 
N 8 HOH A 17 417 16 HOH HOH . 
N 8 HOH A 18 418 43 HOH HOH . 
N 8 HOH A 19 419 36 HOH HOH . 
N 8 HOH A 20 420 56 HOH HOH . 
N 8 HOH A 21 421 15 HOH HOH . 
N 8 HOH A 22 422 42 HOH HOH . 
N 8 HOH A 23 423 63 HOH HOH . 
N 8 HOH A 24 424 37 HOH HOH . 
N 8 HOH A 25 425 30 HOH HOH . 
N 8 HOH A 26 426 13 HOH HOH . 
N 8 HOH A 27 427 57 HOH HOH . 
N 8 HOH A 28 428 21 HOH HOH . 
N 8 HOH A 29 429 39 HOH HOH . 
N 8 HOH A 30 430 19 HOH HOH . 
N 8 HOH A 31 431 33 HOH HOH . 
N 8 HOH A 32 432 51 HOH HOH . 
O 8 HOH B 1 401 44 HOH HOH . 
O 8 HOH B 2 402 26 HOH HOH . 
O 8 HOH B 3 403 54 HOH HOH . 
O 8 HOH B 4 404 58 HOH HOH . 
O 8 HOH B 5 405 14 HOH HOH . 
O 8 HOH B 6 406 40 HOH HOH . 
O 8 HOH B 7 407 34 HOH HOH . 
O 8 HOH B 8 408 45 HOH HOH . 
O 8 HOH B 9 409 5 HOH HOH . 
O 8 HOH B 10 410 64 HOH HOH . 
O 8 HOH B 11 411 10 HOH HOH . 
O 8 HOH B 12 412 22 HOH HOH . 
O 8 HOH B 13 413 41 HOH HOH . 
O 8 HOH B 14 414 7 HOH HOH . 
O 8 HOH B 15 415 35 HOH HOH . 
O 8 HOH B 16 416 20 HOH HOH . 
O 8 HOH B 17 417 46 HOH HOH . 
O 8 HOH B 18 418 6 HOH HOH . 
O 8 HOH B 19 419 52 HOH HOH . 
O 8 HOH B 20 420 3 HOH HOH . 
O 8 HOH B 21 421 25 HOH HOH . 
O 8 HOH B 22 422 18 HOH HOH . 
O 8 HOH B 23 423 27 HOH HOH . 
O 8 HOH B 24 424 55 HOH HOH . 
O 8 HOH B 25 425 38 HOH HOH . 
O 8 HOH B 26 426 31 HOH HOH . 
O 8 HOH B 27 427 29 HOH HOH . 
O 8 HOH B 28 428 4 HOH HOH . 
O 8 HOH B 29 429 11 HOH HOH . 
O 8 HOH B 30 430 32 HOH HOH . 
O 8 HOH B 31 431 28 HOH HOH . 
O 8 HOH B 32 432 9 HOH HOH . 
O 8 HOH B 33 433 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 6 54.85 12.277 46.546 1 33.53 ? C1 EDO 305 A 1 
HETATM 2 O O1 EDO . . . G 6 54.141 13.198 47.393 1 34.75 ? O1 EDO 305 A 1 
HETATM 3 C C2 EDO . . . G 6 55.852 11.451 47.345 1 34.25 ? C2 EDO 305 A 1 
HETATM 4 O O2 EDO . . . G 6 56.677 10.683 46.436 1 34.86 ? O2 EDO 305 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#