data_5BYY
#
_model_server_result.job_id            7Q3OdDOAIqlJ9LRvYoxpbw 
_model_server_result.datetime_utc      '2024-11-13 13:46:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5byy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5BYY 
#
_exptl.entry_id    5BYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.555 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5BYY 
_cell.length_a            92.791 
_cell.length_b            92.791 
_cell.length_c            107.321 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5BYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H30 N6 O3' 
_chem_comp.formula_weight    474.555 
_chem_comp.id                4WG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 4WG sing 1 n n 
C19 N4 4WG sing 2 n n 
N1 C9 4WG doub 3 n y 
N1 C8 4WG sing 4 n y 
C9 C10 4WG sing 5 n y 
C1 O 4WG sing 6 n n 
O C2 4WG sing 7 n n 
C8 N 4WG sing 8 n n 
C8 N2 4WG doub 9 n y 
N4 C10 4WG sing 10 n n 
N4 C18 4WG sing 11 n n 
N C7 4WG sing 12 n n 
C10 C11 4WG doub 13 n y 
C2 C7 4WG doub 14 n y 
C2 C3 4WG sing 15 n y 
O1 C18 4WG doub 16 n n 
C7 C6 4WG sing 17 n y 
C18 C17 4WG sing 18 n n 
N2 C11 4WG sing 19 n y 
C11 N3 4WG sing 20 n n 
C3 C4 4WG doub 21 n y 
C17 C16 4WG doub 22 n y 
C17 C12 4WG sing 23 n y 
C6 C5 4WG doub 24 n y 
N3 C12 4WG sing 25 n n 
N3 C20 4WG sing 26 n n 
C16 C15 4WG sing 27 n y 
C12 C13 4WG doub 28 n y 
C4 C5 4WG sing 29 n y 
C4 N5 4WG sing 30 n n 
C15 C14 4WG doub 31 n y 
N5 C21 4WG sing 32 n n 
N5 C25 4WG sing 33 n n 
C21 C22 4WG sing 34 n n 
C13 C14 4WG sing 35 n y 
C25 C24 4WG sing 36 n n 
C22 C23 4WG sing 37 n n 
C24 C23 4WG sing 38 n n 
C23 O2 4WG sing 39 n n 
C1 H1 4WG sing 40 n n 
C1 H2 4WG sing 41 n n 
C3 H3 4WG sing 42 n n 
C5 H4 4WG sing 43 n n 
C6 H5 4WG sing 44 n n 
C15 H6 4WG sing 45 n n 
C16 H7 4WG sing 46 n n 
C19 H8 4WG sing 47 n n 
C19 H9 4WG sing 48 n n 
C19 H10 4WG sing 49 n n 
C21 H11 4WG sing 50 n n 
C21 H12 4WG sing 51 n n 
C23 H13 4WG sing 52 n n 
C24 H14 4WG sing 53 n n 
C24 H15 4WG sing 54 n n 
C9 H16 4WG sing 55 n n 
C14 H17 4WG sing 56 n n 
C13 H18 4WG sing 57 n n 
C20 H19 4WG sing 58 n n 
C20 H20 4WG sing 59 n n 
C20 H21 4WG sing 60 n n 
N H22 4WG sing 61 n n 
C H23 4WG sing 62 n n 
C H24 4WG sing 63 n n 
C H25 4WG sing 64 n n 
C25 H26 4WG sing 65 n n 
C25 H27 4WG sing 66 n n 
O2 H28 4WG sing 67 n n 
C22 H29 4WG sing 68 n n 
C22 H30 4WG sing 69 n n 
#
_atom_sites.entry_id                     5BYY 
_atom_sites.fract_transf_matrix[1][1]    0.010777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010777 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 4WG A 1 401 1 4WG INX . 
C 3 HOH A 1 501 8 HOH HOH . 
C 3 HOH A 2 502 9 HOH HOH . 
C 3 HOH A 3 503 16 HOH HOH . 
C 3 HOH A 4 504 13 HOH HOH . 
C 3 HOH A 5 505 5 HOH HOH . 
C 3 HOH A 6 506 11 HOH HOH . 
C 3 HOH A 7 507 7 HOH HOH . 
C 3 HOH A 8 508 2 HOH HOH . 
C 3 HOH A 9 509 12 HOH HOH . 
C 3 HOH A 10 510 1 HOH HOH . 
C 3 HOH A 11 511 3 HOH HOH . 
C 3 HOH A 12 512 15 HOH HOH . 
C 3 HOH A 13 513 10 HOH HOH . 
C 3 HOH A 14 514 17 HOH HOH . 
C 3 HOH A 15 515 14 HOH HOH . 
C 3 HOH A 16 516 4 HOH HOH . 
C 3 HOH A 17 517 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4WG . . . B 2 3.036 -49.594 -11.505 1 64.26 ? C1 4WG 401 A 1 
HETATM 2 C C2 4WG . . . B 2 4.235 -48.494 -9.711 1 65.26 ? C2 4WG 401 A 1 
HETATM 3 C C3 4WG . . . B 2 4.308 -49.426 -8.688 1 67.24 ? C3 4WG 401 A 1 
HETATM 4 C C4 4WG . . . B 2 4.41 -49.01 -7.354 1 69.18 ? C4 4WG 401 A 1 
HETATM 5 C C5 4WG . . . B 2 4.458 -47.645 -7.081 1 67.77 ? C5 4WG 401 A 1 
HETATM 6 C C6 4WG . . . B 2 4.409 -46.711 -8.095 1 64.79 ? C6 4WG 401 A 1 
HETATM 7 C C7 4WG . . . B 2 4.303 -47.111 -9.425 1 63.67 ? C7 4WG 401 A 1 
HETATM 8 C C8 4WG . . . B 2 3.759 -44.885 -10.506 1 61.96 ? C8 4WG 401 A 1 
HETATM 9 C C11 4WG . . . B 2 2.806 -43.18 -9.286 1 54.91 ? C11 4WG 401 A 1 
HETATM 10 C C12 4WG . . . B 2 3.101 -41.619 -7.451 1 54.18 ? C12 4WG 401 A 1 
HETATM 11 C C15 4WG . . . B 2 4.635 -39.561 -6.382 1 52.26 ? C15 4WG 401 A 1 
HETATM 12 C C16 4WG . . . B 2 3.952 -39.36 -7.571 1 53.66 ? C16 4WG 401 A 1 
HETATM 13 C C17 4WG . . . B 2 3.178 -40.382 -8.124 1 54.39 ? C17 4WG 401 A 1 
HETATM 14 C C18 4WG . . . B 2 2.479 -40.036 -9.407 1 55.34 ? C18 4WG 401 A 1 
HETATM 15 C C19 4WG . . . B 2 1.607 -40.532 -11.675 1 52.33 ? C19 4WG 401 A 1 
HETATM 16 C C21 4WG . . . B 2 3.727 -51.189 -6.288 1 73.63 ? C21 4WG 401 A 1 
HETATM 17 C C23 4WG . . . B 2 4.213 -51.358 -3.831 1 75.75 ? C23 4WG 401 A 1 
HETATM 18 C C24 4WG . . . B 2 4.943 -50.037 -3.909 1 76.27 ? C24 4WG 401 A 1 
HETATM 19 O O1 4WG . . . B 2 2.017 -38.915 -9.559 1 55.02 ? O1 4WG 401 A 1 
HETATM 20 N N4 4WG . . . B 2 2.313 -40.988 -10.477 1 54.88 ? N4 4WG 401 A 1 
HETATM 21 C C10 4WG . . . B 2 2.795 -42.328 -10.443 1 57.21 ? C10 4WG 401 A 1 
HETATM 22 C C9 4WG . . . B 2 3.326 -42.937 -11.589 1 58.7 ? C9 4WG 401 A 1 
HETATM 23 N N1 4WG . . . B 2 3.806 -44.188 -11.652 1 60.68 ? N1 4WG 401 A 1 
HETATM 24 C C14 4WG . . . B 2 4.557 -40.772 -5.731 1 50.62 ? C14 4WG 401 A 1 
HETATM 25 C C13 4WG . . . B 2 3.797 -41.804 -6.256 1 52.53 ? C13 4WG 401 A 1 
HETATM 26 N N3 4WG . . . B 2 2.28 -42.678 -8.037 1 54.68 ? N3 4WG 401 A 1 
HETATM 27 C C20 4WG . . . B 2 1.652 -43.649 -7.138 1 49.99 ? C20 4WG 401 A 1 
HETATM 28 N N2 4WG . . . B 2 3.275 -44.433 -9.336 1 57.82 ? N2 4WG 401 A 1 
HETATM 29 N N 4WG . . . B 2 4.226 -46.168 -10.469 1 62.06 ? N 4WG 401 A 1 
HETATM 30 O O 4WG . . . B 2 4.152 -48.833 -11.035 1 65.33 ? O 4WG 401 A 1 
HETATM 31 C C 4WG . . . B 2 3.23 -49.814 -12.95 1 64.19 ? C 4WG 401 A 1 
HETATM 32 N N5 4WG . . . B 2 4.478 -49.929 -6.313 1 72.77 ? N5 4WG 401 A 1 
HETATM 33 C C25 4WG . . . B 2 5.535 -49.838 -5.3 1 75.94 ? C25 4WG 401 A 1 
HETATM 34 O O2 4WG . . . B 2 3.647 -51.527 -2.531 1 77.5 ? O2 4WG 401 A 1 
HETATM 35 C C22 4WG . . . B 2 3.139 -51.426 -4.894 1 75.12 ? C22 4WG 401 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#