data_5BZ3 # _model_server_result.job_id dydf12ZHCepJMplA5UW3bQ _model_server_result.datetime_utc '2025-07-13 23:08:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5BZ3 # _exptl.entry_id 5BZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BZ3 _cell.length_a 56.58 _cell.length_b 94.09 _cell.length_c 147.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -73.64 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C17 H32 O4' _chem_comp.formula_weight 300.434 _chem_comp.id 7E8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.7 MAG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 7E8 sing 1 n n C19 C18 7E8 sing 2 n n O20 C18 7E8 sing 3 n n C17 O16 7E8 sing 4 n n C17 C18 7E8 sing 5 n n O16 C8 7E8 sing 6 n n C8 O15 7E8 doub 7 n n C8 C7 7E8 sing 8 n n C7 C6 7E8 sing 9 n n C6 C5 7E8 sing 10 n n C5 C4 7E8 sing 11 n n C4 C3 7E8 sing 12 n n C3 C2 7E8 sing 13 n n C2 C1 7E8 doub 14 n n C1 C9 7E8 sing 15 n n C9 C10 7E8 sing 16 n n C10 C11 7E8 sing 17 n n C11 C12 7E8 sing 18 n n C12 C13 7E8 sing 19 n n C13 C14 7E8 sing 20 n n O22 H22 7E8 sing 21 n n C19 H191 7E8 sing 22 n n C19 H192 7E8 sing 23 n n C18 H18 7E8 sing 24 n n O20 H20 7E8 sing 25 n n C17 H171 7E8 sing 26 n n C17 H172 7E8 sing 27 n n C7 H7 7E8 sing 28 n n C7 H8 7E8 sing 29 n n C6 H61C 7E8 sing 30 z n C6 H62C 7E8 sing 31 n n C5 H51C 7E8 sing 32 n n C5 H52C 7E8 sing 33 n n C4 H41C 7E8 sing 34 n n C4 H42C 7E8 sing 35 n n C3 H31C 7E8 sing 36 n n C3 H32C 7E8 sing 37 n n C2 H2 7E8 sing 38 n n C1 H1 7E8 sing 39 n n C9 H91C 7E8 sing 40 n n C9 H92C 7E8 sing 41 n n C10 H101 7E8 sing 42 n n C10 H102 7E8 sing 43 n n C11 H111 7E8 sing 44 n n C11 H112 7E8 sing 45 n n C12 H121 7E8 sing 46 n n C12 H122 7E8 sing 47 n n C13 H131 7E8 sing 48 n n C13 H132 7E8 sing 49 n n C14 H141 7E8 sing 50 n n C14 H142 7E8 sing 51 n n C14 H143 7E8 sing 52 n n # _atom_sites.entry_id 5BZ3 _atom_sites.fract_transf_matrix[1][1] 0.017674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7E8 A 1 401 1 7E8 7E8 . C 2 7E8 A 1 402 2 7E8 7E8 . D 2 7E8 A 1 403 3 7E8 7E8 . E 2 7E8 A 1 404 4 7E8 7E8 . F 2 7E8 A 1 405 5 7E8 7E8 . G 2 7E8 A 1 406 6 7E8 7E8 . H 2 7E8 A 1 407 7 7E8 7E8 . I 3 HOH A 1 501 14 HOH HOH . I 3 HOH A 2 502 29 HOH HOH . I 3 HOH A 3 503 52 HOH HOH . I 3 HOH A 4 504 86 HOH HOH . I 3 HOH A 5 505 41 HOH HOH . I 3 HOH A 6 506 16 HOH HOH . I 3 HOH A 7 507 53 HOH HOH . I 3 HOH A 8 508 3 HOH HOH . I 3 HOH A 9 509 42 HOH HOH . I 3 HOH A 10 510 5 HOH HOH . I 3 HOH A 11 511 79 HOH HOH . I 3 HOH A 12 512 6 HOH HOH . I 3 HOH A 13 513 8 HOH HOH . I 3 HOH A 14 514 21 HOH HOH . I 3 HOH A 15 515 49 HOH HOH . I 3 HOH A 16 516 18 HOH HOH . I 3 HOH A 17 517 43 HOH HOH . I 3 HOH A 18 518 33 HOH HOH . I 3 HOH A 19 519 61 HOH HOH . I 3 HOH A 20 520 24 HOH HOH . I 3 HOH A 21 521 2 HOH HOH . I 3 HOH A 22 522 68 HOH HOH . I 3 HOH A 23 523 59 HOH HOH . I 3 HOH A 24 524 47 HOH HOH . I 3 HOH A 25 525 27 HOH HOH . I 3 HOH A 26 526 50 HOH HOH . I 3 HOH A 27 527 25 HOH HOH . I 3 HOH A 28 528 9 HOH HOH . I 3 HOH A 29 529 17 HOH HOH . I 3 HOH A 30 530 62 HOH HOH . I 3 HOH A 31 531 15 HOH HOH . I 3 HOH A 32 532 60 HOH HOH . I 3 HOH A 33 533 46 HOH HOH . I 3 HOH A 34 534 12 HOH HOH . I 3 HOH A 35 535 40 HOH HOH . I 3 HOH A 36 536 71 HOH HOH . I 3 HOH A 37 537 54 HOH HOH . I 3 HOH A 38 538 70 HOH HOH . I 3 HOH A 39 539 39 HOH HOH . I 3 HOH A 40 540 10 HOH HOH . I 3 HOH A 41 541 88 HOH HOH . I 3 HOH A 42 542 34 HOH HOH . I 3 HOH A 43 543 82 HOH HOH . I 3 HOH A 44 544 63 HOH HOH . I 3 HOH A 45 545 66 HOH HOH . I 3 HOH A 46 546 69 HOH HOH . I 3 HOH A 47 547 67 HOH HOH . I 3 HOH A 48 548 45 HOH HOH . I 3 HOH A 49 549 4 HOH HOH . I 3 HOH A 50 550 30 HOH HOH . I 3 HOH A 51 551 89 HOH HOH . I 3 HOH A 52 552 57 HOH HOH . I 3 HOH A 53 553 11 HOH HOH . I 3 HOH A 54 554 28 HOH HOH . I 3 HOH A 55 555 74 HOH HOH . I 3 HOH A 56 556 55 HOH HOH . I 3 HOH A 57 557 72 HOH HOH . I 3 HOH A 58 558 56 HOH HOH . I 3 HOH A 59 559 73 HOH HOH . I 3 HOH A 60 560 58 HOH HOH . I 3 HOH A 61 561 83 HOH HOH . I 3 HOH A 62 562 76 HOH HOH . I 3 HOH A 63 563 85 HOH HOH . I 3 HOH A 64 564 81 HOH HOH . I 3 HOH A 65 565 32 HOH HOH . I 3 HOH A 66 566 7 HOH HOH . I 3 HOH A 67 567 87 HOH HOH . I 3 HOH A 68 568 64 HOH HOH . I 3 HOH A 69 569 1 HOH HOH . I 3 HOH A 70 570 84 HOH HOH . I 3 HOH A 71 571 65 HOH HOH . I 3 HOH A 72 572 80 HOH HOH . I 3 HOH A 73 573 75 HOH HOH . I 3 HOH A 74 574 77 HOH HOH . I 3 HOH A 75 575 22 HOH HOH . I 3 HOH A 76 576 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 7E8 . . . C 2 -11.149 -12.674 -33.453 1 56.74 ? O22 7E8 402 A 1 HETATM 2 C C19 7E8 . . . C 2 -10.617 -13.691 -32.641 1 54.45 ? C19 7E8 402 A 1 HETATM 3 O O20 7E8 . . . C 2 -8.715 -12.232 -32.16 1 56.92 ? O20 7E8 402 A 1 HETATM 4 C C17 7E8 . . . C 2 -10.558 -12.071 -30.499 1 60.05 ? C17 7E8 402 A 1 HETATM 5 O O16 7E8 . . . C 2 -10.699 -10.664 -30.901 1 70.29 ? O16 7E8 402 A 1 HETATM 6 C C8 7E8 . . . C 2 -11.096 -9.69 -29.977 1 63.3 ? C8 7E8 402 A 1 HETATM 7 O O15 7E8 . . . C 2 -11.319 -10.053 -28.834 1 60.08 ? O15 7E8 402 A 1 HETATM 8 C C7 7E8 . . . C 2 -11.271 -8.156 -30.338 1 67.2 ? C7 7E8 402 A 1 HETATM 9 C C6 7E8 . . . C 2 -10.783 -7.159 -29.189 1 62.88 ? C6 7E8 402 A 1 HETATM 10 C C5 7E8 . . . C 2 -9.307 -7.413 -28.697 1 61.81 ? C5 7E8 402 A 1 HETATM 11 C C4 7E8 . . . C 2 -8.451 -6.106 -28.458 1 64.56 ? C4 7E8 402 A 1 HETATM 12 C C3 7E8 . . . C 2 -7.299 -6.272 -27.392 1 65.1 ? C3 7E8 402 A 1 HETATM 13 C C2 7E8 . . . C 2 -6.869 -5.161 -26.396 1 71.43 ? C2 7E8 402 A 1 HETATM 14 C C1 7E8 . . . C 2 -7.128 -5.029 -25.071 1 69.69 ? C1 7E8 402 A 1 HETATM 15 C C9 7E8 . . . C 2 -6.765 -3.75 -24.248 1 72.61 ? C9 7E8 402 A 1 HETATM 16 C C10 7E8 . . . C 2 -6.475 -3.832 -22.685 1 67.88 ? C10 7E8 402 A 1 HETATM 17 C C11 7E8 . . . C 2 -7.438 -2.961 -21.78 1 72.4 ? C11 7E8 402 A 1 HETATM 18 C C12 7E8 . . . C 2 -7.52 -1.437 -22.18 1 82.99 ? C12 7E8 402 A 1 HETATM 19 C C13 7E8 . . . C 2 -6.153 -0.67 -22.127 1 84.27 ? C13 7E8 402 A 1 HETATM 20 C C14 7E8 . . . C 2 -5.94 0.107 -20.803 1 85.67 ? C14 7E8 402 A 1 HETATM 21 C C18 7E8 . . . C 2 -9.677 -13.005 -31.525 1 56.29 ? C18 7E8 402 A 1 HETATM 22 H H22 7E8 . . . C 2 -11.508 -12.978 -34.139 1 68.09 ? H22 7E8 402 A 1 HETATM 23 H H191 7E8 . . . C 2 -11.305 -14.19 -32.241 1 65.35 ? H191 7E8 402 A 1 HETATM 24 H H192 7E8 . . . C 2 -10.098 -14.248 -33.191 1 65.35 ? H192 7E8 402 A 1 HETATM 25 H H18 7E8 . . . C 2 -9.26 -13.7 -31.051 1 67.55 ? H18 7E8 402 A 1 HETATM 26 H H20 7E8 . . . C 2 -7.98 -12.281 -31.773 1 68.31 ? H20 7E8 402 A 1 HETATM 27 H H171 7E8 . . . C 2 -11.422 -12.432 -30.433 1 72.07 ? H171 7E8 402 A 1 HETATM 28 H H172 7E8 . . . C 2 -10.17 -12.11 -29.645 1 72.07 ? H172 7E8 402 A 1 HETATM 29 H H7 7E8 . . . C 2 -10.779 -7.959 -31.113 1 80.64 ? H7 7E8 402 A 1 HETATM 30 H H8 7E8 . . . C 2 -12.165 -7.964 -30.549 1 80.64 ? H8 7E8 402 A 1 HETATM 31 H H61C 7E8 . . . C 2 -11.361 -7.211 -28.45 1 75.46 ? H61C 7E8 402 A 1 HETATM 32 H H62C 7E8 . . . C 2 -10.856 -6.28 -29.509 1 75.46 ? H62C 7E8 402 A 1 HETATM 33 H H51C 7E8 . . . C 2 -8.864 -7.955 -29.323 1 74.18 ? H51C 7E8 402 A 1 HETATM 34 H H52C 7E8 . . . C 2 -9.332 -7.916 -27.904 1 74.18 ? H52C 7E8 402 A 1 HETATM 35 H H41C 7E8 . . . C 2 -8.064 -5.844 -29.272 1 77.48 ? H41C 7E8 402 A 1 HETATM 36 H H42C 7E8 . . . C 2 -9.023 -5.407 -28.201 1 77.48 ? H42C 7E8 402 A 1 HETATM 37 H H31C 7E8 . . . C 2 -6.508 -6.464 -27.859 1 78.13 ? H31C 7E8 402 A 1 HETATM 38 H H32C 7E8 . . . C 2 -7.451 -7.045 -26.88 1 78.13 ? H32C 7E8 402 A 1 HETATM 39 H H2 7E8 . . . C 2 -6.082 -4.749 -26.736 1 85.72 ? H2 7E8 402 A 1 HETATM 40 H H1 7E8 . . . C 2 -7.243 -5.739 -24.448 1 83.63 ? H1 7E8 402 A 1 HETATM 41 H H91C 7E8 . . . C 2 -6.016 -3.349 -24.647 1 87.13 ? H91C 7E8 402 A 1 HETATM 42 H H92C 7E8 . . . C 2 -7.476 -3.153 -24.387 1 87.13 ? H92C 7E8 402 A 1 HETATM 43 H H101 7E8 . . . C 2 -5.572 -3.627 -22.529 1 81.46 ? H101 7E8 402 A 1 HETATM 44 H H102 7E8 . . . C 2 -6.592 -4.718 -22.395 1 81.46 ? H102 7E8 402 A 1 HETATM 45 H H111 7E8 . . . C 2 -7.16 -3.027 -20.886 1 86.88 ? H111 7E8 402 A 1 HETATM 46 H H112 7E8 . . . C 2 -8.302 -3.329 -21.801 1 86.88 ? H112 7E8 402 A 1 HETATM 47 H H121 7E8 . . . C 2 -7.874 -1.364 -23.047 1 99.59 ? H121 7E8 402 A 1 HETATM 48 H H122 7E8 . . . C 2 -8.138 -1.003 -21.622 1 99.59 ? H122 7E8 402 A 1 HETATM 49 H H131 7E8 . . . C 2 -5.445 -1.274 -22.252 1 101.12 ? H131 7E8 402 A 1 HETATM 50 H H132 7E8 . . . C 2 -6.099 -0.075 -22.852 1 101.12 ? H132 7E8 402 A 1 HETATM 51 H H141 7E8 . . . C 2 -5.101 0.524 -20.743 1 102.81 ? H141 7E8 402 A 1 HETATM 52 H H142 7E8 . . . C 2 -6.006 -0.452 -20.051 1 102.81 ? H142 7E8 402 A 1 HETATM 53 H H143 7E8 . . . C 2 -6.577 0.788 -20.691 1 102.81 ? H143 7E8 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #