data_5BZ3 # _model_server_result.job_id '_NBKFbdtDRDpl-yyuwGJig' _model_server_result.datetime_utc '2025-07-13 15:12:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5BZ3 # _exptl.entry_id 5BZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BZ3 _cell.length_a 56.58 _cell.length_b 94.09 _cell.length_c 147.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -73.64 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C17 H32 O4' _chem_comp.formula_weight 300.434 _chem_comp.id 7E8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.7 MAG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 7E8 sing 1 n n C19 C18 7E8 sing 2 n n O20 C18 7E8 sing 3 n n C17 O16 7E8 sing 4 n n C17 C18 7E8 sing 5 n n O16 C8 7E8 sing 6 n n C8 O15 7E8 doub 7 n n C8 C7 7E8 sing 8 n n C7 C6 7E8 sing 9 n n C6 C5 7E8 sing 10 n n C5 C4 7E8 sing 11 n n C4 C3 7E8 sing 12 n n C3 C2 7E8 sing 13 n n C2 C1 7E8 doub 14 n n C1 C9 7E8 sing 15 n n C9 C10 7E8 sing 16 n n C10 C11 7E8 sing 17 n n C11 C12 7E8 sing 18 n n C12 C13 7E8 sing 19 n n C13 C14 7E8 sing 20 n n O22 H22 7E8 sing 21 n n C19 H191 7E8 sing 22 n n C19 H192 7E8 sing 23 n n C18 H18 7E8 sing 24 n n O20 H20 7E8 sing 25 n n C17 H171 7E8 sing 26 n n C17 H172 7E8 sing 27 n n C7 H7 7E8 sing 28 n n C7 H8 7E8 sing 29 n n C6 H61C 7E8 sing 30 z n C6 H62C 7E8 sing 31 n n C5 H51C 7E8 sing 32 n n C5 H52C 7E8 sing 33 n n C4 H41C 7E8 sing 34 n n C4 H42C 7E8 sing 35 n n C3 H31C 7E8 sing 36 n n C3 H32C 7E8 sing 37 n n C2 H2 7E8 sing 38 n n C1 H1 7E8 sing 39 n n C9 H91C 7E8 sing 40 n n C9 H92C 7E8 sing 41 n n C10 H101 7E8 sing 42 n n C10 H102 7E8 sing 43 n n C11 H111 7E8 sing 44 n n C11 H112 7E8 sing 45 n n C12 H121 7E8 sing 46 n n C12 H122 7E8 sing 47 n n C13 H131 7E8 sing 48 n n C13 H132 7E8 sing 49 n n C14 H141 7E8 sing 50 n n C14 H142 7E8 sing 51 n n C14 H143 7E8 sing 52 n n # _atom_sites.entry_id 5BZ3 _atom_sites.fract_transf_matrix[1][1] 0.017674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7E8 A 1 401 1 7E8 7E8 . C 2 7E8 A 1 402 2 7E8 7E8 . D 2 7E8 A 1 403 3 7E8 7E8 . E 2 7E8 A 1 404 4 7E8 7E8 . F 2 7E8 A 1 405 5 7E8 7E8 . G 2 7E8 A 1 406 6 7E8 7E8 . H 2 7E8 A 1 407 7 7E8 7E8 . I 3 HOH A 1 501 14 HOH HOH . I 3 HOH A 2 502 29 HOH HOH . I 3 HOH A 3 503 52 HOH HOH . I 3 HOH A 4 504 86 HOH HOH . I 3 HOH A 5 505 41 HOH HOH . I 3 HOH A 6 506 16 HOH HOH . I 3 HOH A 7 507 53 HOH HOH . I 3 HOH A 8 508 3 HOH HOH . I 3 HOH A 9 509 42 HOH HOH . I 3 HOH A 10 510 5 HOH HOH . I 3 HOH A 11 511 79 HOH HOH . I 3 HOH A 12 512 6 HOH HOH . I 3 HOH A 13 513 8 HOH HOH . I 3 HOH A 14 514 21 HOH HOH . I 3 HOH A 15 515 49 HOH HOH . I 3 HOH A 16 516 18 HOH HOH . I 3 HOH A 17 517 43 HOH HOH . I 3 HOH A 18 518 33 HOH HOH . I 3 HOH A 19 519 61 HOH HOH . I 3 HOH A 20 520 24 HOH HOH . I 3 HOH A 21 521 2 HOH HOH . I 3 HOH A 22 522 68 HOH HOH . I 3 HOH A 23 523 59 HOH HOH . I 3 HOH A 24 524 47 HOH HOH . I 3 HOH A 25 525 27 HOH HOH . I 3 HOH A 26 526 50 HOH HOH . I 3 HOH A 27 527 25 HOH HOH . I 3 HOH A 28 528 9 HOH HOH . I 3 HOH A 29 529 17 HOH HOH . I 3 HOH A 30 530 62 HOH HOH . I 3 HOH A 31 531 15 HOH HOH . I 3 HOH A 32 532 60 HOH HOH . I 3 HOH A 33 533 46 HOH HOH . I 3 HOH A 34 534 12 HOH HOH . I 3 HOH A 35 535 40 HOH HOH . I 3 HOH A 36 536 71 HOH HOH . I 3 HOH A 37 537 54 HOH HOH . I 3 HOH A 38 538 70 HOH HOH . I 3 HOH A 39 539 39 HOH HOH . I 3 HOH A 40 540 10 HOH HOH . I 3 HOH A 41 541 88 HOH HOH . I 3 HOH A 42 542 34 HOH HOH . I 3 HOH A 43 543 82 HOH HOH . I 3 HOH A 44 544 63 HOH HOH . I 3 HOH A 45 545 66 HOH HOH . I 3 HOH A 46 546 69 HOH HOH . I 3 HOH A 47 547 67 HOH HOH . I 3 HOH A 48 548 45 HOH HOH . I 3 HOH A 49 549 4 HOH HOH . I 3 HOH A 50 550 30 HOH HOH . I 3 HOH A 51 551 89 HOH HOH . I 3 HOH A 52 552 57 HOH HOH . I 3 HOH A 53 553 11 HOH HOH . I 3 HOH A 54 554 28 HOH HOH . I 3 HOH A 55 555 74 HOH HOH . I 3 HOH A 56 556 55 HOH HOH . I 3 HOH A 57 557 72 HOH HOH . I 3 HOH A 58 558 56 HOH HOH . I 3 HOH A 59 559 73 HOH HOH . I 3 HOH A 60 560 58 HOH HOH . I 3 HOH A 61 561 83 HOH HOH . I 3 HOH A 62 562 76 HOH HOH . I 3 HOH A 63 563 85 HOH HOH . I 3 HOH A 64 564 81 HOH HOH . I 3 HOH A 65 565 32 HOH HOH . I 3 HOH A 66 566 7 HOH HOH . I 3 HOH A 67 567 87 HOH HOH . I 3 HOH A 68 568 64 HOH HOH . I 3 HOH A 69 569 1 HOH HOH . I 3 HOH A 70 570 84 HOH HOH . I 3 HOH A 71 571 65 HOH HOH . I 3 HOH A 72 572 80 HOH HOH . I 3 HOH A 73 573 75 HOH HOH . I 3 HOH A 74 574 77 HOH HOH . I 3 HOH A 75 575 22 HOH HOH . I 3 HOH A 76 576 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 7E8 . . . E 2 10.403 -33.428 -18.009 1 79.07 ? O22 7E8 404 A 1 HETATM 2 C C19 7E8 . . . E 2 10.217 -33.804 -16.666 1 84.43 ? C19 7E8 404 A 1 HETATM 3 O O20 7E8 . . . E 2 8.547 -33.414 -14.911 1 76.93 ? O20 7E8 404 A 1 HETATM 4 C C17 7E8 . . . E 2 9.821 -31.42 -15.606 1 74.32 ? C17 7E8 404 A 1 HETATM 5 O O16 7E8 . . . E 2 10.92 -31.049 -16.478 1 83.13 ? O16 7E8 404 A 1 HETATM 6 C C8 7E8 . . . E 2 11.209 -29.728 -16.755 1 81.41 ? C8 7E8 404 A 1 HETATM 7 O O15 7E8 . . . E 2 10.991 -28.9 -15.882 1 79.4 ? O15 7E8 404 A 1 HETATM 8 C C7 7E8 . . . E 2 11.802 -29.259 -18.135 1 82.4 ? C7 7E8 404 A 1 HETATM 9 C C6 7E8 . . . E 2 11.457 -30.244 -19.347 1 83.06 ? C6 7E8 404 A 1 HETATM 10 C C5 7E8 . . . E 2 12.598 -30.4 -20.433 1 73.79 ? C5 7E8 404 A 1 HETATM 11 C C4 7E8 . . . E 2 13.483 -29.112 -20.632 1 73.49 ? C4 7E8 404 A 1 HETATM 12 C C3 7E8 . . . E 2 12.668 -27.809 -20.928 1 65.51 ? C3 7E8 404 A 1 HETATM 13 C C2 7E8 . . . E 2 13.276 -26.394 -21.036 1 68.3 ? C2 7E8 404 A 1 HETATM 14 C C1 7E8 . . . E 2 13.281 -25.546 -22.088 1 63.8 ? C1 7E8 404 A 1 HETATM 15 C C9 7E8 . . . E 2 13.231 -24.007 -21.938 1 59 ? C9 7E8 404 A 1 HETATM 16 C C10 7E8 . . . E 2 11.861 -23.235 -21.89 1 55.21 ? C10 7E8 404 A 1 HETATM 17 C C11 7E8 . . . E 2 11.972 -21.733 -22.352 1 58.51 ? C11 7E8 404 A 1 HETATM 18 C C12 7E8 . . . E 2 11.293 -20.696 -21.401 1 53.07 ? C12 7E8 404 A 1 HETATM 19 C C13 7E8 . . . E 2 11.479 -19.21 -21.854 1 54.36 ? C13 7E8 404 A 1 HETATM 20 C C14 7E8 . . . E 2 12.454 -18.406 -20.944 1 70.11 ? C14 7E8 404 A 1 HETATM 21 C C18 7E8 . . . E 2 9.117 -32.814 -16.033 1 78.89 ? C18 7E8 404 A 1 HETATM 22 H H22 7E8 . . . E 2 10.287 -34.065 -18.531 1 94.89 ? H22 7E8 404 A 1 HETATM 23 H H191 7E8 . . . E 2 11.026 -33.758 -16.193 1 101.31 ? H191 7E8 404 A 1 HETATM 24 H H192 7E8 . . . E 2 9.892 -34.685 -16.662 1 101.31 ? H192 7E8 404 A 1 HETATM 25 H H18 7E8 . . . E 2 8.46 -32.665 -16.688 1 94.66 ? H18 7E8 404 A 1 HETATM 26 H H20 7E8 . . . E 2 7.739 -33.229 -14.842 1 92.32 ? H20 7E8 404 A 1 HETATM 27 H H171 7E8 . . . E 2 10.163 -31.502 -14.735 1 89.19 ? H171 7E8 404 A 1 HETATM 28 H H172 7E8 . . . E 2 9.179 -30.735 -15.602 1 89.19 ? H172 7E8 404 A 1 HETATM 29 H H7 7E8 . . . E 2 11.463 -28.41 -18.351 1 98.88 ? H7 7E8 404 A 1 HETATM 30 H H8 7E8 . . . E 2 12.734 -29.155 -18.081 1 98.88 ? H8 7E8 404 A 1 HETATM 31 H H61C 7E8 . . . E 2 11.241 -31.096 -19.015 1 99.67 ? H61C 7E8 404 A 1 HETATM 32 H H62C 7E8 . . . E 2 10.676 -29.932 -19.765 1 99.67 ? H62C 7E8 404 A 1 HETATM 33 H H51C 7E8 . . . E 2 13.154 -31.119 -20.195 1 88.55 ? H51C 7E8 404 A 1 HETATM 34 H H52C 7E8 . . . E 2 12.21 -30.642 -21.253 1 88.55 ? H52C 7E8 404 A 1 HETATM 35 H H41C 7E8 . . . E 2 13.993 -28.971 -19.856 1 88.18 ? H41C 7E8 404 A 1 HETATM 36 H H42C 7E8 . . . E 2 14.097 -29.266 -21.326 1 88.18 ? H42C 7E8 404 A 1 HETATM 37 H H31C 7E8 . . . E 2 12.246 -27.926 -21.758 1 78.62 ? H31C 7E8 404 A 1 HETATM 38 H H32C 7E8 . . . E 2 11.952 -27.744 -20.323 1 78.62 ? H32C 7E8 404 A 1 HETATM 39 H H2 7E8 . . . E 2 13.3 -26.016 -20.163 1 81.96 ? H2 7E8 404 A 1 HETATM 40 H H1 7E8 . . . E 2 13.621 -25.732 -22.957 1 76.57 ? H1 7E8 404 A 1 HETATM 41 H H91C 7E8 . . . E 2 13.707 -23.774 -21.163 1 70.8 ? H91C 7E8 404 A 1 HETATM 42 H H92C 7E8 . . . E 2 13.736 -23.67 -22.654 1 70.8 ? H92C 7E8 404 A 1 HETATM 43 H H101 7E8 . . . E 2 11.218 -23.709 -22.383 1 66.26 ? H101 7E8 404 A 1 HETATM 44 H H102 7E8 . . . E 2 11.548 -23.208 -21.005 1 66.26 ? H102 7E8 404 A 1 HETATM 45 H H111 7E8 . . . E 2 11.598 -21.65 -23.209 1 70.22 ? H111 7E8 404 A 1 HETATM 46 H H112 7E8 . . . E 2 12.878 -21.506 -22.452 1 70.22 ? H112 7E8 404 A 1 HETATM 47 H H121 7E8 . . . E 2 11.636 -20.796 -20.533 1 63.69 ? H121 7E8 404 A 1 HETATM 48 H H122 7E8 . . . E 2 10.376 -20.887 -21.332 1 63.69 ? H122 7E8 404 A 1 HETATM 49 H H131 7E8 . . . E 2 10.645 -18.778 -21.876 1 65.24 ? H131 7E8 404 A 1 HETATM 50 H H132 7E8 . . . E 2 11.789 -19.19 -22.74 1 65.24 ? H132 7E8 404 A 1 HETATM 51 H H141 7E8 . . . E 2 13.305 -18.795 -20.871 1 84.13 ? H141 7E8 404 A 1 HETATM 52 H H142 7E8 . . . E 2 12.13 -18.323 -20.066 1 84.13 ? H142 7E8 404 A 1 HETATM 53 H H143 7E8 . . . E 2 12.594 -17.534 -21.264 1 84.13 ? H143 7E8 404 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 535 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #