data_5BZ3 # _model_server_result.job_id UwyFde3lGd9_txUItgqLVw _model_server_result.datetime_utc '2025-07-20 01:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5BZ3 # _exptl.entry_id 5BZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5BZ3 _cell.length_a 56.58 _cell.length_b 94.09 _cell.length_c 147.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -73.64 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C17 H32 O4' _chem_comp.formula_weight 300.434 _chem_comp.id 7E8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.7 MAG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 7E8 sing 1 n n C19 C18 7E8 sing 2 n n O20 C18 7E8 sing 3 n n C17 O16 7E8 sing 4 n n C17 C18 7E8 sing 5 n n O16 C8 7E8 sing 6 n n C8 O15 7E8 doub 7 n n C8 C7 7E8 sing 8 n n C7 C6 7E8 sing 9 n n C6 C5 7E8 sing 10 n n C5 C4 7E8 sing 11 n n C4 C3 7E8 sing 12 n n C3 C2 7E8 sing 13 n n C2 C1 7E8 doub 14 n n C1 C9 7E8 sing 15 n n C9 C10 7E8 sing 16 n n C10 C11 7E8 sing 17 n n C11 C12 7E8 sing 18 n n C12 C13 7E8 sing 19 n n C13 C14 7E8 sing 20 n n O22 H22 7E8 sing 21 n n C19 H191 7E8 sing 22 n n C19 H192 7E8 sing 23 n n C18 H18 7E8 sing 24 n n O20 H20 7E8 sing 25 n n C17 H171 7E8 sing 26 n n C17 H172 7E8 sing 27 n n C7 H7 7E8 sing 28 n n C7 H8 7E8 sing 29 n n C6 H61C 7E8 sing 30 z n C6 H62C 7E8 sing 31 n n C5 H51C 7E8 sing 32 n n C5 H52C 7E8 sing 33 n n C4 H41C 7E8 sing 34 n n C4 H42C 7E8 sing 35 n n C3 H31C 7E8 sing 36 n n C3 H32C 7E8 sing 37 n n C2 H2 7E8 sing 38 n n C1 H1 7E8 sing 39 n n C9 H91C 7E8 sing 40 n n C9 H92C 7E8 sing 41 n n C10 H101 7E8 sing 42 n n C10 H102 7E8 sing 43 n n C11 H111 7E8 sing 44 n n C11 H112 7E8 sing 45 n n C12 H121 7E8 sing 46 n n C12 H122 7E8 sing 47 n n C13 H131 7E8 sing 48 n n C13 H132 7E8 sing 49 n n C14 H141 7E8 sing 50 n n C14 H142 7E8 sing 51 n n C14 H143 7E8 sing 52 n n # _atom_sites.entry_id 5BZ3 _atom_sites.fract_transf_matrix[1][1] 0.017674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7E8 A 1 401 1 7E8 7E8 . C 2 7E8 A 1 402 2 7E8 7E8 . D 2 7E8 A 1 403 3 7E8 7E8 . E 2 7E8 A 1 404 4 7E8 7E8 . F 2 7E8 A 1 405 5 7E8 7E8 . G 2 7E8 A 1 406 6 7E8 7E8 . H 2 7E8 A 1 407 7 7E8 7E8 . I 3 HOH A 1 501 14 HOH HOH . I 3 HOH A 2 502 29 HOH HOH . I 3 HOH A 3 503 52 HOH HOH . I 3 HOH A 4 504 86 HOH HOH . I 3 HOH A 5 505 41 HOH HOH . I 3 HOH A 6 506 16 HOH HOH . I 3 HOH A 7 507 53 HOH HOH . I 3 HOH A 8 508 3 HOH HOH . I 3 HOH A 9 509 42 HOH HOH . I 3 HOH A 10 510 5 HOH HOH . I 3 HOH A 11 511 79 HOH HOH . I 3 HOH A 12 512 6 HOH HOH . I 3 HOH A 13 513 8 HOH HOH . I 3 HOH A 14 514 21 HOH HOH . I 3 HOH A 15 515 49 HOH HOH . I 3 HOH A 16 516 18 HOH HOH . I 3 HOH A 17 517 43 HOH HOH . I 3 HOH A 18 518 33 HOH HOH . I 3 HOH A 19 519 61 HOH HOH . I 3 HOH A 20 520 24 HOH HOH . I 3 HOH A 21 521 2 HOH HOH . I 3 HOH A 22 522 68 HOH HOH . I 3 HOH A 23 523 59 HOH HOH . I 3 HOH A 24 524 47 HOH HOH . I 3 HOH A 25 525 27 HOH HOH . I 3 HOH A 26 526 50 HOH HOH . I 3 HOH A 27 527 25 HOH HOH . I 3 HOH A 28 528 9 HOH HOH . I 3 HOH A 29 529 17 HOH HOH . I 3 HOH A 30 530 62 HOH HOH . I 3 HOH A 31 531 15 HOH HOH . I 3 HOH A 32 532 60 HOH HOH . I 3 HOH A 33 533 46 HOH HOH . I 3 HOH A 34 534 12 HOH HOH . I 3 HOH A 35 535 40 HOH HOH . I 3 HOH A 36 536 71 HOH HOH . I 3 HOH A 37 537 54 HOH HOH . I 3 HOH A 38 538 70 HOH HOH . I 3 HOH A 39 539 39 HOH HOH . I 3 HOH A 40 540 10 HOH HOH . I 3 HOH A 41 541 88 HOH HOH . I 3 HOH A 42 542 34 HOH HOH . I 3 HOH A 43 543 82 HOH HOH . I 3 HOH A 44 544 63 HOH HOH . I 3 HOH A 45 545 66 HOH HOH . I 3 HOH A 46 546 69 HOH HOH . I 3 HOH A 47 547 67 HOH HOH . I 3 HOH A 48 548 45 HOH HOH . I 3 HOH A 49 549 4 HOH HOH . I 3 HOH A 50 550 30 HOH HOH . I 3 HOH A 51 551 89 HOH HOH . I 3 HOH A 52 552 57 HOH HOH . I 3 HOH A 53 553 11 HOH HOH . I 3 HOH A 54 554 28 HOH HOH . I 3 HOH A 55 555 74 HOH HOH . I 3 HOH A 56 556 55 HOH HOH . I 3 HOH A 57 557 72 HOH HOH . I 3 HOH A 58 558 56 HOH HOH . I 3 HOH A 59 559 73 HOH HOH . I 3 HOH A 60 560 58 HOH HOH . I 3 HOH A 61 561 83 HOH HOH . I 3 HOH A 62 562 76 HOH HOH . I 3 HOH A 63 563 85 HOH HOH . I 3 HOH A 64 564 81 HOH HOH . I 3 HOH A 65 565 32 HOH HOH . I 3 HOH A 66 566 7 HOH HOH . I 3 HOH A 67 567 87 HOH HOH . I 3 HOH A 68 568 64 HOH HOH . I 3 HOH A 69 569 1 HOH HOH . I 3 HOH A 70 570 84 HOH HOH . I 3 HOH A 71 571 65 HOH HOH . I 3 HOH A 72 572 80 HOH HOH . I 3 HOH A 73 573 75 HOH HOH . I 3 HOH A 74 574 77 HOH HOH . I 3 HOH A 75 575 22 HOH HOH . I 3 HOH A 76 576 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 7E8 . . . F 2 10.287 -35.929 -4.569 1 80.56 ? O22 7E8 405 A 1 HETATM 2 C C19 7E8 . . . F 2 11.485 -35.269 -4.895 1 82 ? C19 7E8 405 A 1 HETATM 3 O O20 7E8 . . . F 2 10.782 -32.954 -4.543 1 82.7 ? O20 7E8 405 A 1 HETATM 4 C C17 7E8 . . . F 2 12.348 -33.269 -6.432 1 91.06 ? C17 7E8 405 A 1 HETATM 5 O O16 7E8 . . . F 2 12.142 -31.921 -6.941 1 87.84 ? O16 7E8 405 A 1 HETATM 6 C C8 7E8 . . . F 2 12.834 -31.465 -8.054 1 92.78 ? C8 7E8 405 A 1 HETATM 7 O O15 7E8 . . . F 2 13.676 -30.6 -7.884 1 93.61 ? O15 7E8 405 A 1 HETATM 8 C C7 7E8 . . . F 2 12.571 -32.013 -9.509 1 91.79 ? C7 7E8 405 A 1 HETATM 9 C C6 7E8 . . . F 2 13.552 -33.179 -9.937 1 98.49 ? C6 7E8 405 A 1 HETATM 10 C C5 7E8 . . . F 2 14.472 -32.833 -11.166 1 102.75 ? C5 7E8 405 A 1 HETATM 11 C C4 7E8 . . . F 2 13.673 -32.5 -12.486 1 101.54 ? C4 7E8 405 A 1 HETATM 12 C C3 7E8 . . . F 2 14.24 -31.288 -13.308 1 101.43 ? C3 7E8 405 A 1 HETATM 13 C C2 7E8 . . . F 2 14.779 -29.978 -12.671 1 102.06 ? C2 7E8 405 A 1 HETATM 14 C C1 7E8 . . . F 2 15.076 -28.787 -13.238 1 102.54 ? C1 7E8 405 A 1 HETATM 15 C C9 7E8 . . . F 2 14.607 -28.366 -14.662 1 103.86 ? C9 7E8 405 A 1 HETATM 16 C C10 7E8 . . . F 2 14.944 -29.244 -15.934 1 104.16 ? C10 7E8 405 A 1 HETATM 17 C C11 7E8 . . . F 2 16.388 -29.021 -16.521 1 104.61 ? C11 7E8 405 A 1 HETATM 18 C C12 7E8 . . . F 2 17.542 -29.292 -15.498 1 111.22 ? C12 7E8 405 A 1 HETATM 19 C C13 7E8 . . . F 2 18.037 -28.016 -14.736 1 108.19 ? C13 7E8 405 A 1 HETATM 20 C C14 7E8 . . . F 2 19.21 -28.31 -13.767 1 105.79 ? C14 7E8 405 A 1 HETATM 21 C C18 7E8 . . . F 2 11.098 -33.851 -5.56 1 83.78 ? C18 7E8 405 A 1 HETATM 22 H H22 7E8 . . . F 2 10.39 -36.474 -3.949 1 96.68 ? H22 7E8 405 A 1 HETATM 23 H H191 7E8 . . . F 2 12.017 -35.151 -4.131 1 98.41 ? H191 7E8 405 A 1 HETATM 24 H H192 7E8 . . . F 2 11.938 -35.801 -5.522 1 98.41 ? H192 7E8 405 A 1 HETATM 25 H H18 7E8 . . . F 2 10.35 -33.993 -6.109 1 100.54 ? H18 7E8 405 A 1 HETATM 26 H H20 7E8 . . . F 2 10.247 -32.373 -4.803 1 99.25 ? H20 7E8 405 A 1 HETATM 27 H H171 7E8 . . . F 2 13.114 -33.252 -5.889 1 109.27 ? H171 7E8 405 A 1 HETATM 28 H H172 7E8 . . . F 2 12.519 -33.85 -7.149 1 109.27 ? H172 7E8 405 A 1 HETATM 29 H H7 7E8 . . . F 2 11.693 -32.342 -9.566 1 110.15 ? H7 7E8 405 A 1 HETATM 30 H H8 7E8 . . . F 2 12.624 -31.321 -10.141 1 110.15 ? H8 7E8 405 A 1 HETATM 31 H H61C 7E8 . . . F 2 13.063 -33.956 -10.136 1 118.19 ? H61C 7E8 405 A 1 HETATM 32 H H62C 7E8 . . . F 2 14.091 -33.399 -9.2 1 118.19 ? H62C 7E8 405 A 1 HETATM 33 H H51C 7E8 . . . F 2 15.051 -33.554 -11.332 1 123.3 ? H51C 7E8 405 A 1 HETATM 34 H H52C 7E8 . . . F 2 15.025 -32.108 -10.943 1 123.3 ? H52C 7E8 405 A 1 HETATM 35 H H41C 7E8 . . . F 2 13.675 -33.258 -13.041 1 121.85 ? H41C 7E8 405 A 1 HETATM 36 H H42C 7E8 . . . F 2 12.774 -32.339 -12.267 1 121.85 ? H42C 7E8 405 A 1 HETATM 37 H H31C 7E8 . . . F 2 14.97 -31.603 -13.808 1 121.72 ? H31C 7E8 405 A 1 HETATM 38 H H32C 7E8 . . . F 2 13.616 -31.029 -13.961 1 121.72 ? H32C 7E8 405 A 1 HETATM 39 H H2 7E8 . . . F 2 14.55 -29.983 -11.748 1 122.48 ? H2 7E8 405 A 1 HETATM 40 H H1 7E8 . . . F 2 15.32 -27.991 -12.778 1 123.05 ? H1 7E8 405 A 1 HETATM 41 H H91C 7E8 . . . F 2 13.674 -28.258 -14.641 1 124.63 ? H91C 7E8 405 A 1 HETATM 42 H H92C 7E8 . . . F 2 14.957 -27.505 -14.796 1 124.63 ? H92C 7E8 405 A 1 HETATM 43 H H101 7E8 . . . F 2 14.279 -29.114 -16.584 1 124.99 ? H101 7E8 405 A 1 HETATM 44 H H102 7E8 . . . F 2 14.904 -30.154 -15.703 1 124.99 ? H102 7E8 405 A 1 HETATM 45 H H111 7E8 . . . F 2 16.459 -28.14 -16.838 1 125.53 ? H111 7E8 405 A 1 HETATM 46 H H112 7E8 . . . F 2 16.509 -29.57 -17.273 1 125.53 ? H112 7E8 405 A 1 HETATM 47 H H121 7E8 . . . F 2 18.27 -29.68 -15.946 1 133.47 ? H121 7E8 405 A 1 HETATM 48 H H122 7E8 . . . F 2 17.26 -29.934 -14.873 1 133.47 ? H122 7E8 405 A 1 HETATM 49 H H131 7E8 . . . F 2 18.297 -27.358 -15.353 1 129.83 ? H131 7E8 405 A 1 HETATM 50 H H132 7E8 . . . F 2 17.322 -27.638 -14.259 1 129.83 ? H132 7E8 405 A 1 HETATM 51 H H141 7E8 . . . F 2 19.55 -27.543 -13.345 1 126.95 ? H141 7E8 405 A 1 HETATM 52 H H142 7E8 . . . F 2 18.959 -28.896 -13.077 1 126.95 ? H142 7E8 405 A 1 HETATM 53 H H143 7E8 . . . F 2 19.938 -28.707 -14.209 1 126.95 ? H143 7E8 405 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 482 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #