data_5BZM # _model_server_result.job_id Ws9Uk_lrupanOD4aJ7yNXw _model_server_result.datetime_utc '2024-10-12 10:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5BZM # _exptl.entry_id 5BZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.357 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(4-amino-3-methylpyridin-2-yl)methyl]-1,2,3,4-tetrahydroisoquinolin-8-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.94 _cell.angle_gamma 90 _cell.entry_id 5BZM _cell.length_a 30.806 _cell.length_b 81.516 _cell.length_c 32.17 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C16 H20 N4' _chem_comp.formula_weight 268.357 _chem_comp.id 4X8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(4-amino-3-methylpyridin-2-yl)methyl]-1,2,3,4-tetrahydroisoquinolin-8-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5BZM _atom_sites.fract_transf_matrix[1][1] 0.032461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4X8 A 1 201 1 4X8 DRG . C 3 DMS A 1 202 1 DMS DMS . D 4 SO4 A 1 203 1 SO4 SO4 . E 5 HOH A 1 301 62 HOH HOH . E 5 HOH A 2 302 22 HOH HOH . E 5 HOH A 3 303 4 HOH HOH . E 5 HOH A 4 304 17 HOH HOH . E 5 HOH A 5 305 13 HOH HOH . E 5 HOH A 6 306 9 HOH HOH . E 5 HOH A 7 307 15 HOH HOH . E 5 HOH A 8 308 40 HOH HOH . E 5 HOH A 9 309 2 HOH HOH . E 5 HOH A 10 310 19 HOH HOH . E 5 HOH A 11 311 18 HOH HOH . E 5 HOH A 12 312 28 HOH HOH . E 5 HOH A 13 313 44 HOH HOH . E 5 HOH A 14 314 31 HOH HOH . E 5 HOH A 15 315 11 HOH HOH . E 5 HOH A 16 316 1 HOH HOH . E 5 HOH A 17 317 10 HOH HOH . E 5 HOH A 18 318 8 HOH HOH . E 5 HOH A 19 319 14 HOH HOH . E 5 HOH A 20 320 27 HOH HOH . E 5 HOH A 21 321 26 HOH HOH . E 5 HOH A 22 322 39 HOH HOH . E 5 HOH A 23 323 12 HOH HOH . E 5 HOH A 24 324 46 HOH HOH . E 5 HOH A 25 325 41 HOH HOH . E 5 HOH A 26 326 3 HOH HOH . E 5 HOH A 27 327 7 HOH HOH . E 5 HOH A 28 328 43 HOH HOH . E 5 HOH A 29 329 32 HOH HOH . E 5 HOH A 30 330 60 HOH HOH . E 5 HOH A 31 331 5 HOH HOH . E 5 HOH A 32 332 56 HOH HOH . E 5 HOH A 33 333 38 HOH HOH . E 5 HOH A 34 334 16 HOH HOH . E 5 HOH A 35 335 54 HOH HOH . E 5 HOH A 36 336 24 HOH HOH . E 5 HOH A 37 337 59 HOH HOH . E 5 HOH A 38 338 45 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 29 HOH HOH . E 5 HOH A 41 341 35 HOH HOH . E 5 HOH A 42 342 34 HOH HOH . E 5 HOH A 43 343 33 HOH HOH . E 5 HOH A 44 344 6 HOH HOH . E 5 HOH A 45 345 36 HOH HOH . E 5 HOH A 46 346 20 HOH HOH . E 5 HOH A 47 347 50 HOH HOH . E 5 HOH A 48 348 57 HOH HOH . E 5 HOH A 49 349 61 HOH HOH . E 5 HOH A 50 350 25 HOH HOH . E 5 HOH A 51 351 37 HOH HOH . E 5 HOH A 52 352 21 HOH HOH . E 5 HOH A 53 353 30 HOH HOH . E 5 HOH A 54 354 23 HOH HOH . E 5 HOH A 55 355 48 HOH HOH . E 5 HOH A 56 356 58 HOH HOH . E 5 HOH A 57 357 55 HOH HOH . E 5 HOH A 58 358 63 HOH HOH . E 5 HOH A 59 359 51 HOH HOH . E 5 HOH A 60 360 49 HOH HOH . E 5 HOH A 61 361 52 HOH HOH . E 5 HOH A 62 362 53 HOH HOH . E 5 HOH A 63 363 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ 4X8 . . . B 2 12.259 -5.964 1.057 1 19.13 ? CAJ 4X8 201 A 1 HETATM 2 C CAI 4X8 . . . B 2 12.845 -4.781 0.283 1 19.54 ? CAI 4X8 201 A 1 HETATM 3 C CAQ 4X8 . . . B 2 11.986 -4.312 -0.733 1 16.54 ? CAQ 4X8 201 A 1 HETATM 4 C CAG 4X8 . . . B 2 12.513 -3.452 -1.706 1 17.53 ? CAG 4X8 201 A 1 HETATM 5 C CAD 4X8 . . . B 2 11.714 -2.945 -2.737 1 14.69 ? CAD 4X8 201 A 1 HETATM 6 C CAF 4X8 . . . B 2 10.353 -3.263 -2.834 1 11.24 ? CAF 4X8 201 A 1 HETATM 7 C CAO 4X8 . . . B 2 9.846 -4.149 -1.851 1 14.21 ? CAO 4X8 201 A 1 HETATM 8 N NAC 4X8 . . . B 2 8.549 -4.5 -1.875 1 13.89 ? NAC 4X8 201 A 1 HETATM 9 C CAS 4X8 . . . B 2 10.619 -4.662 -0.78 1 15.92 ? CAS 4X8 201 A 1 HETATM 10 C CAL 4X8 . . . B 2 10.048 -5.555 0.202 1 15.85 ? CAL 4X8 201 A 1 HETATM 11 N NAT 4X8 . . . B 2 10.852 -5.731 1.446 1 18.57 ? NAT 4X8 201 A 1 HETATM 12 C CAK 4X8 . . . B 2 10.324 -6.779 2.38 1 20.96 ? CAK 4X8 201 A 1 HETATM 13 C CAR 4X8 . . . B 2 11.087 -6.897 3.577 1 23.21 ? CAR 4X8 201 A 1 HETATM 14 N NAM 4X8 . . . B 2 11.044 -5.876 4.452 1 22.88 ? NAM 4X8 201 A 1 HETATM 15 C CAE 4X8 . . . B 2 11.778 -5.878 5.658 1 22.66 ? CAE 4X8 201 A 1 HETATM 16 C CAH 4X8 . . . B 2 12.568 -6.973 5.984 1 24.97 ? CAH 4X8 201 A 1 HETATM 17 C CAN 4X8 . . . B 2 12.617 -8.034 5.087 1 25.84 ? CAN 4X8 201 A 1 HETATM 18 N NAB 4X8 . . . B 2 13.358 -9.105 5.362 1 28.48 ? NAB 4X8 201 A 1 HETATM 19 C CAP 4X8 . . . B 2 11.886 -8.022 3.881 1 25.04 ? CAP 4X8 201 A 1 HETATM 20 C CAA 4X8 . . . B 2 11.965 -9.117 3.004 1 25.72 ? CAA 4X8 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #