data_5BZQ # _model_server_result.job_id YtcanA88UeDBE-6yOaoj0A _model_server_result.datetime_utc '2024-11-24 08:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5bzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5BZQ # _exptl.entry_id 5BZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.85 _cell.angle_gamma 90 _cell.entry_id 5BZQ _cell.length_a 30.849 _cell.length_b 81.845 _cell.length_c 32.18 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5BZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 130 n n S C1 DMS sing 131 n n S C2 DMS sing 132 n n C1 H11 DMS sing 133 n n C1 H12 DMS sing 134 n n C1 H13 DMS sing 135 n n C2 H21 DMS sing 136 n n C2 H22 DMS sing 137 n n C2 H23 DMS sing 138 n n # _atom_sites.entry_id 5BZQ _atom_sites.fract_transf_matrix[1][1] 0.032416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4XL A 1 201 1 4XL DRG . C 3 DMS A 1 202 1 DMS DMS . D 4 SO4 A 1 203 1 SO4 SO4 . E 5 HOH A 1 301 93 HOH HOH . E 5 HOH A 2 302 17 HOH HOH . E 5 HOH A 3 303 99 HOH HOH . E 5 HOH A 4 304 96 HOH HOH . E 5 HOH A 5 305 48 HOH HOH . E 5 HOH A 6 306 73 HOH HOH . E 5 HOH A 7 307 46 HOH HOH . E 5 HOH A 8 308 16 HOH HOH . E 5 HOH A 9 309 21 HOH HOH . E 5 HOH A 10 310 18 HOH HOH . E 5 HOH A 11 311 107 HOH HOH . E 5 HOH A 12 312 92 HOH HOH . E 5 HOH A 13 313 72 HOH HOH . E 5 HOH A 14 314 80 HOH HOH . E 5 HOH A 15 315 90 HOH HOH . E 5 HOH A 16 316 101 HOH HOH . E 5 HOH A 17 317 67 HOH HOH . E 5 HOH A 18 318 7 HOH HOH . E 5 HOH A 19 319 95 HOH HOH . E 5 HOH A 20 320 53 HOH HOH . E 5 HOH A 21 321 25 HOH HOH . E 5 HOH A 22 322 76 HOH HOH . E 5 HOH A 23 323 31 HOH HOH . E 5 HOH A 24 324 68 HOH HOH . E 5 HOH A 25 325 22 HOH HOH . E 5 HOH A 26 326 2 HOH HOH . E 5 HOH A 27 327 52 HOH HOH . E 5 HOH A 28 328 6 HOH HOH . E 5 HOH A 29 329 33 HOH HOH . E 5 HOH A 30 330 63 HOH HOH . E 5 HOH A 31 331 4 HOH HOH . E 5 HOH A 32 332 47 HOH HOH . E 5 HOH A 33 333 1 HOH HOH . E 5 HOH A 34 334 77 HOH HOH . E 5 HOH A 35 335 8 HOH HOH . E 5 HOH A 36 336 88 HOH HOH . E 5 HOH A 37 337 12 HOH HOH . E 5 HOH A 38 338 59 HOH HOH . E 5 HOH A 39 339 44 HOH HOH . E 5 HOH A 40 340 5 HOH HOH . E 5 HOH A 41 341 10 HOH HOH . E 5 HOH A 42 342 70 HOH HOH . E 5 HOH A 43 343 94 HOH HOH . E 5 HOH A 44 344 15 HOH HOH . E 5 HOH A 45 345 49 HOH HOH . E 5 HOH A 46 346 104 HOH HOH . E 5 HOH A 47 347 28 HOH HOH . E 5 HOH A 48 348 97 HOH HOH . E 5 HOH A 49 349 69 HOH HOH . E 5 HOH A 50 350 102 HOH HOH . E 5 HOH A 51 351 23 HOH HOH . E 5 HOH A 52 352 32 HOH HOH . E 5 HOH A 53 353 108 HOH HOH . E 5 HOH A 54 354 41 HOH HOH . E 5 HOH A 55 355 82 HOH HOH . E 5 HOH A 56 356 75 HOH HOH . E 5 HOH A 57 357 78 HOH HOH . E 5 HOH A 58 358 29 HOH HOH . E 5 HOH A 59 359 51 HOH HOH . E 5 HOH A 60 360 81 HOH HOH . E 5 HOH A 61 361 89 HOH HOH . E 5 HOH A 62 362 3 HOH HOH . E 5 HOH A 63 363 19 HOH HOH . E 5 HOH A 64 364 84 HOH HOH . E 5 HOH A 65 365 26 HOH HOH . E 5 HOH A 66 366 56 HOH HOH . E 5 HOH A 67 367 38 HOH HOH . E 5 HOH A 68 368 57 HOH HOH . E 5 HOH A 69 369 50 HOH HOH . E 5 HOH A 70 370 55 HOH HOH . E 5 HOH A 71 371 39 HOH HOH . E 5 HOH A 72 372 106 HOH HOH . E 5 HOH A 73 373 40 HOH HOH . E 5 HOH A 74 374 43 HOH HOH . E 5 HOH A 75 375 66 HOH HOH . E 5 HOH A 76 376 74 HOH HOH . E 5 HOH A 77 377 37 HOH HOH . E 5 HOH A 78 378 42 HOH HOH . E 5 HOH A 79 379 14 HOH HOH . E 5 HOH A 80 380 20 HOH HOH . E 5 HOH A 81 381 30 HOH HOH . E 5 HOH A 82 382 65 HOH HOH . E 5 HOH A 83 383 85 HOH HOH . E 5 HOH A 84 384 11 HOH HOH . E 5 HOH A 85 385 100 HOH HOH . E 5 HOH A 86 386 9 HOH HOH . E 5 HOH A 87 387 105 HOH HOH . E 5 HOH A 88 388 24 HOH HOH . E 5 HOH A 89 389 36 HOH HOH . E 5 HOH A 90 390 45 HOH HOH . E 5 HOH A 91 391 13 HOH HOH . E 5 HOH A 92 392 60 HOH HOH . E 5 HOH A 93 393 34 HOH HOH . E 5 HOH A 94 394 109 HOH HOH . E 5 HOH A 95 395 103 HOH HOH . E 5 HOH A 96 396 71 HOH HOH . E 5 HOH A 97 397 64 HOH HOH . E 5 HOH A 98 398 62 HOH HOH . E 5 HOH A 99 399 35 HOH HOH . E 5 HOH A 100 400 58 HOH HOH . E 5 HOH A 101 401 87 HOH HOH . E 5 HOH A 102 402 54 HOH HOH . E 5 HOH A 103 403 86 HOH HOH . E 5 HOH A 104 404 27 HOH HOH . E 5 HOH A 105 405 83 HOH HOH . E 5 HOH A 106 406 98 HOH HOH . E 5 HOH A 107 407 79 HOH HOH . E 5 HOH A 108 408 61 HOH HOH . E 5 HOH A 109 409 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 7.58 -3.89 -9.519 1 13.39 ? S DMS 202 A 1 HETATM 2 O O DMS . . . C 3 8.992 -4.672 -8.861 1 11.63 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . C 3 7.781 -4.101 -11.301 1 13.5 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . C 3 6.274 -5.039 -9.097 1 12.87 ? C2 DMS 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #