data_5C01 # _model_server_result.job_id B0LOgaMslFL7K9Ct4TWU4A _model_server_result.datetime_utc '2024-11-16 11:52:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":902}' # _entry.id 5C01 # _exptl.entry_id 5C01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.28 _cell.angle_gamma 90 _cell.entry_id 5C01 _cell.length_a 56.34 _cell.length_b 48.17 _cell.length_c 114.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 808 1_555 A SG CYS 309 A CYS 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 B SG CYS 279 B CYS 808 1_555 B SG CYS 309 B CYS 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5C01 _atom_sites.fract_transf_matrix[1][1] 0.017749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UNL A 1 901 1000 UNL UNL . D 3 EDO A 1 902 1 EDO EDO . E 3 EDO A 1 903 3 EDO EDO . F 4 GOL A 1 904 4 GOL GOL . G 2 UNL B 1 901 1000 UNL UNL . H 3 EDO B 1 902 2 EDO EDO . I 5 HOH A 1 1001 156 HOH HOH . I 5 HOH A 2 1002 194 HOH HOH . I 5 HOH A 3 1003 21 HOH HOH . I 5 HOH A 4 1004 208 HOH HOH . I 5 HOH A 5 1005 9 HOH HOH . I 5 HOH A 6 1006 242 HOH HOH . I 5 HOH A 7 1007 13 HOH HOH . I 5 HOH A 8 1008 112 HOH HOH . I 5 HOH A 9 1009 86 HOH HOH . I 5 HOH A 10 1010 102 HOH HOH . I 5 HOH A 11 1011 172 HOH HOH . I 5 HOH A 12 1012 248 HOH HOH . I 5 HOH A 13 1013 138 HOH HOH . I 5 HOH A 14 1014 15 HOH HOH . I 5 HOH A 15 1015 2 HOH HOH . I 5 HOH A 16 1016 4 HOH HOH . I 5 HOH A 17 1017 54 HOH HOH . I 5 HOH A 18 1018 165 HOH HOH . I 5 HOH A 19 1019 145 HOH HOH . I 5 HOH A 20 1020 218 HOH HOH . I 5 HOH A 21 1021 64 HOH HOH . I 5 HOH A 22 1022 63 HOH HOH . I 5 HOH A 23 1023 227 HOH HOH . I 5 HOH A 24 1024 43 HOH HOH . I 5 HOH A 25 1025 157 HOH HOH . I 5 HOH A 26 1026 174 HOH HOH . I 5 HOH A 27 1027 124 HOH HOH . I 5 HOH A 28 1028 140 HOH HOH . I 5 HOH A 29 1029 123 HOH HOH . I 5 HOH A 30 1030 158 HOH HOH . I 5 HOH A 31 1031 107 HOH HOH . I 5 HOH A 32 1032 98 HOH HOH . I 5 HOH A 33 1033 191 HOH HOH . I 5 HOH A 34 1034 66 HOH HOH . I 5 HOH A 35 1035 178 HOH HOH . I 5 HOH A 36 1036 29 HOH HOH . I 5 HOH A 37 1037 204 HOH HOH . I 5 HOH A 38 1038 152 HOH HOH . I 5 HOH A 39 1039 154 HOH HOH . I 5 HOH A 40 1040 20 HOH HOH . I 5 HOH A 41 1041 94 HOH HOH . I 5 HOH A 42 1042 142 HOH HOH . I 5 HOH A 43 1043 202 HOH HOH . I 5 HOH A 44 1044 147 HOH HOH . I 5 HOH A 45 1045 58 HOH HOH . I 5 HOH A 46 1046 26 HOH HOH . I 5 HOH A 47 1047 55 HOH HOH . I 5 HOH A 48 1048 109 HOH HOH . I 5 HOH A 49 1049 36 HOH HOH . I 5 HOH A 50 1050 128 HOH HOH . I 5 HOH A 51 1051 100 HOH HOH . I 5 HOH A 52 1052 23 HOH HOH . I 5 HOH A 53 1053 79 HOH HOH . I 5 HOH A 54 1054 77 HOH HOH . I 5 HOH A 55 1055 168 HOH HOH . I 5 HOH A 56 1056 226 HOH HOH . I 5 HOH A 57 1057 188 HOH HOH . I 5 HOH A 58 1058 52 HOH HOH . I 5 HOH A 59 1059 245 HOH HOH . I 5 HOH A 60 1060 59 HOH HOH . I 5 HOH A 61 1061 42 HOH HOH . I 5 HOH A 62 1062 57 HOH HOH . I 5 HOH A 63 1063 222 HOH HOH . I 5 HOH A 64 1064 216 HOH HOH . I 5 HOH A 65 1065 76 HOH HOH . I 5 HOH A 66 1066 144 HOH HOH . I 5 HOH A 67 1067 241 HOH HOH . I 5 HOH A 68 1068 175 HOH HOH . I 5 HOH A 69 1069 115 HOH HOH . I 5 HOH A 70 1070 61 HOH HOH . I 5 HOH A 71 1071 127 HOH HOH . I 5 HOH A 72 1072 167 HOH HOH . I 5 HOH A 73 1073 200 HOH HOH . I 5 HOH A 74 1074 163 HOH HOH . I 5 HOH A 75 1075 250 HOH HOH . I 5 HOH A 76 1076 235 HOH HOH . I 5 HOH A 77 1077 184 HOH HOH . I 5 HOH A 78 1078 131 HOH HOH . I 5 HOH A 79 1079 25 HOH HOH . I 5 HOH A 80 1080 237 HOH HOH . I 5 HOH A 81 1081 146 HOH HOH . I 5 HOH A 82 1082 35 HOH HOH . I 5 HOH A 83 1083 220 HOH HOH . I 5 HOH A 84 1084 118 HOH HOH . I 5 HOH A 85 1085 166 HOH HOH . I 5 HOH A 86 1086 212 HOH HOH . I 5 HOH A 87 1087 231 HOH HOH . I 5 HOH A 88 1088 134 HOH HOH . I 5 HOH A 89 1089 219 HOH HOH . I 5 HOH A 90 1090 62 HOH HOH . I 5 HOH A 91 1091 164 HOH HOH . I 5 HOH A 92 1092 228 HOH HOH . I 5 HOH A 93 1093 215 HOH HOH . I 5 HOH A 94 1094 171 HOH HOH . I 5 HOH A 95 1095 177 HOH HOH . I 5 HOH A 96 1096 69 HOH HOH . I 5 HOH A 97 1097 181 HOH HOH . I 5 HOH A 98 1098 229 HOH HOH . I 5 HOH A 99 1099 193 HOH HOH . I 5 HOH A 100 1100 155 HOH HOH . I 5 HOH A 101 1101 81 HOH HOH . I 5 HOH A 102 1102 189 HOH HOH . I 5 HOH A 103 1103 82 HOH HOH . I 5 HOH A 104 1104 169 HOH HOH . I 5 HOH A 105 1105 110 HOH HOH . I 5 HOH A 106 1106 170 HOH HOH . I 5 HOH A 107 1107 119 HOH HOH . I 5 HOH A 108 1108 192 HOH HOH . I 5 HOH A 109 1109 108 HOH HOH . I 5 HOH A 110 1110 78 HOH HOH . I 5 HOH A 111 1111 3 HOH HOH . I 5 HOH A 112 1112 203 HOH HOH . I 5 HOH A 113 1113 14 HOH HOH . I 5 HOH A 114 1114 75 HOH HOH . I 5 HOH A 115 1115 232 HOH HOH . I 5 HOH A 116 1116 67 HOH HOH . I 5 HOH A 117 1117 50 HOH HOH . I 5 HOH A 118 1118 8 HOH HOH . I 5 HOH A 119 1119 139 HOH HOH . I 5 HOH A 120 1120 217 HOH HOH . I 5 HOH A 121 1121 90 HOH HOH . I 5 HOH A 122 1122 125 HOH HOH . I 5 HOH A 123 1123 224 HOH HOH . I 5 HOH A 124 1124 60 HOH HOH . I 5 HOH A 125 1125 104 HOH HOH . I 5 HOH A 126 1126 211 HOH HOH . I 5 HOH A 127 1127 183 HOH HOH . I 5 HOH A 128 1128 197 HOH HOH . I 5 HOH A 129 1129 160 HOH HOH . I 5 HOH A 130 1130 180 HOH HOH . I 5 HOH A 131 1131 137 HOH HOH . J 5 HOH B 1 1001 16 HOH HOH . J 5 HOH B 2 1002 93 HOH HOH . J 5 HOH B 3 1003 91 HOH HOH . J 5 HOH B 4 1004 186 HOH HOH . J 5 HOH B 5 1005 113 HOH HOH . J 5 HOH B 6 1006 95 HOH HOH . J 5 HOH B 7 1007 246 HOH HOH . J 5 HOH B 8 1008 159 HOH HOH . J 5 HOH B 9 1009 130 HOH HOH . J 5 HOH B 10 1010 6 HOH HOH . J 5 HOH B 11 1011 135 HOH HOH . J 5 HOH B 12 1012 80 HOH HOH . J 5 HOH B 13 1013 87 HOH HOH . J 5 HOH B 14 1014 249 HOH HOH . J 5 HOH B 15 1015 27 HOH HOH . J 5 HOH B 16 1016 213 HOH HOH . J 5 HOH B 17 1017 73 HOH HOH . J 5 HOH B 18 1018 41 HOH HOH . J 5 HOH B 19 1019 247 HOH HOH . J 5 HOH B 20 1020 103 HOH HOH . J 5 HOH B 21 1021 116 HOH HOH . J 5 HOH B 22 1022 31 HOH HOH . J 5 HOH B 23 1023 38 HOH HOH . J 5 HOH B 24 1024 53 HOH HOH . J 5 HOH B 25 1025 214 HOH HOH . J 5 HOH B 26 1026 32 HOH HOH . J 5 HOH B 27 1027 196 HOH HOH . J 5 HOH B 28 1028 12 HOH HOH . J 5 HOH B 29 1029 7 HOH HOH . J 5 HOH B 30 1030 234 HOH HOH . J 5 HOH B 31 1031 46 HOH HOH . J 5 HOH B 32 1032 136 HOH HOH . J 5 HOH B 33 1033 39 HOH HOH . J 5 HOH B 34 1034 19 HOH HOH . J 5 HOH B 35 1035 51 HOH HOH . J 5 HOH B 36 1036 236 HOH HOH . J 5 HOH B 37 1037 121 HOH HOH . J 5 HOH B 38 1038 68 HOH HOH . J 5 HOH B 39 1039 88 HOH HOH . J 5 HOH B 40 1040 18 HOH HOH . J 5 HOH B 41 1041 187 HOH HOH . J 5 HOH B 42 1042 99 HOH HOH . J 5 HOH B 43 1043 74 HOH HOH . J 5 HOH B 44 1044 105 HOH HOH . J 5 HOH B 45 1045 92 HOH HOH . J 5 HOH B 46 1046 238 HOH HOH . J 5 HOH B 47 1047 11 HOH HOH . J 5 HOH B 48 1048 72 HOH HOH . J 5 HOH B 49 1049 111 HOH HOH . J 5 HOH B 50 1050 33 HOH HOH . J 5 HOH B 51 1051 206 HOH HOH . J 5 HOH B 52 1052 106 HOH HOH . J 5 HOH B 53 1053 117 HOH HOH . J 5 HOH B 54 1054 101 HOH HOH . J 5 HOH B 55 1055 120 HOH HOH . J 5 HOH B 56 1056 233 HOH HOH . J 5 HOH B 57 1057 251 HOH HOH . J 5 HOH B 58 1058 65 HOH HOH . J 5 HOH B 59 1059 49 HOH HOH . J 5 HOH B 60 1060 84 HOH HOH . J 5 HOH B 61 1061 83 HOH HOH . J 5 HOH B 62 1062 209 HOH HOH . J 5 HOH B 63 1063 141 HOH HOH . J 5 HOH B 64 1064 190 HOH HOH . J 5 HOH B 65 1065 37 HOH HOH . J 5 HOH B 66 1066 40 HOH HOH . J 5 HOH B 67 1067 71 HOH HOH . J 5 HOH B 68 1068 129 HOH HOH . J 5 HOH B 69 1069 133 HOH HOH . J 5 HOH B 70 1070 148 HOH HOH . J 5 HOH B 71 1071 70 HOH HOH . J 5 HOH B 72 1072 45 HOH HOH . J 5 HOH B 73 1073 161 HOH HOH . J 5 HOH B 74 1074 143 HOH HOH . J 5 HOH B 75 1075 195 HOH HOH . J 5 HOH B 76 1076 28 HOH HOH . J 5 HOH B 77 1077 126 HOH HOH . J 5 HOH B 78 1078 44 HOH HOH . J 5 HOH B 79 1079 173 HOH HOH . J 5 HOH B 80 1080 205 HOH HOH . J 5 HOH B 81 1081 198 HOH HOH . J 5 HOH B 82 1082 151 HOH HOH . J 5 HOH B 83 1083 85 HOH HOH . J 5 HOH B 84 1084 96 HOH HOH . J 5 HOH B 85 1085 185 HOH HOH . J 5 HOH B 86 1086 150 HOH HOH . J 5 HOH B 87 1087 207 HOH HOH . J 5 HOH B 88 1088 162 HOH HOH . J 5 HOH B 89 1089 225 HOH HOH . J 5 HOH B 90 1090 176 HOH HOH . J 5 HOH B 91 1091 199 HOH HOH . J 5 HOH B 92 1092 252 HOH HOH . J 5 HOH B 93 1093 221 HOH HOH . J 5 HOH B 94 1094 24 HOH HOH . J 5 HOH B 95 1095 1 HOH HOH . J 5 HOH B 96 1096 240 HOH HOH . J 5 HOH B 97 1097 182 HOH HOH . J 5 HOH B 98 1098 34 HOH HOH . J 5 HOH B 99 1099 47 HOH HOH . J 5 HOH B 100 1100 149 HOH HOH . J 5 HOH B 101 1101 179 HOH HOH . J 5 HOH B 102 1102 132 HOH HOH . J 5 HOH B 103 1103 153 HOH HOH . J 5 HOH B 104 1104 210 HOH HOH . J 5 HOH B 105 1105 114 HOH HOH . J 5 HOH B 106 1106 230 HOH HOH . J 5 HOH B 107 1107 56 HOH HOH . J 5 HOH B 108 1108 5 HOH HOH . J 5 HOH B 109 1109 89 HOH HOH . J 5 HOH B 110 1110 243 HOH HOH . J 5 HOH B 111 1111 22 HOH HOH . J 5 HOH B 112 1112 122 HOH HOH . J 5 HOH B 113 1113 48 HOH HOH . J 5 HOH B 114 1114 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 23.844 -12.015 54.497 1 36.8 ? C1 EDO 902 B 1 HETATM 2 O O1 EDO . . . H 3 22.475 -12.318 54.19 1 34.31 ? O1 EDO 902 B 1 HETATM 3 C C2 EDO . . . H 3 24.09 -11.923 56.013 1 37.91 ? C2 EDO 902 B 1 HETATM 4 O O2 EDO . . . H 3 25.514 -11.951 56.288 1 37.34 ? O2 EDO 902 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #