data_5C09
#
_model_server_result.job_id            nStfoKh3GPEn61VVx1v6bQ 
_model_server_result.datetime_utc      '2024-11-22 00:24:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    5C09 
#
_exptl.entry_id    5C09 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.91 
_cell.angle_beta          98.31 
_cell.angle_gamma         96.52 
_cell.entry_id            5C09 
_cell.length_a            43.83 
_cell.length_b            100.07 
_cell.length_c            122.44 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,S,T,U,V,W 1 1 
F,G,H,I,J,O,P,Q,R,X,Y,Z,AA,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 21 D CYS 23 1_555 D SG CYS 87 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf5 D SG CYS 157 D CYS 159 1_555 E SG CYS 173 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf6 E SG CYS 23 E CYS 23 1_555 E SG CYS 92 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf7 E SG CYS 147 E CYS 147 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
disulf ? disulf9 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
disulf ? disulf10 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf11 I SG CYS 21 I CYS 23 1_555 I SG CYS 87 I CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf12 I SG CYS 132 I CYS 134 1_555 I SG CYS 182 I CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf13 I SG CYS 157 I CYS 159 1_555 J SG CYS 173 J CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf14 J SG CYS 23 J CYS 23 1_555 J SG CYS 92 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 J SG CYS 147 J CYS 147 1_555 J SG CYS 212 J CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 290 n n 
S O2 SO4 doub 291 n n 
S O3 SO4 sing 292 n n 
S O4 SO4 sing 293 n n 
#
_atom_sites.entry_id                     5C09 
_atom_sites.fract_transf_matrix[1][1]    0.022815 
_atom_sites.fract_transf_matrix[1][2]    0.002608 
_atom_sites.fract_transf_matrix[1][3]    0.003731 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010058 
_atom_sites.fract_transf_matrix[2][3]    0.001413 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 SO4 A 1 301 301 SO4 SO4 . 
L 6 SO4 A 1 302 302 SO4 SO4 . 
M 6 SO4 A 1 303 304 SO4 SO4 . 
N 6 SO4 D 1 301 306 SO4 SO4 . 
O 6 SO4 F 1 301 307 SO4 SO4 . 
P 6 SO4 F 1 302 308 SO4 SO4 . 
Q 6 SO4 I 1 301 303 SO4 SO4 . 
R 6 SO4 J 1 301 305 SO4 SO4 . 
S 7 HOH A 1 401 409 HOH HOH . 
S 7 HOH A 2 402 459 HOH HOH . 
S 7 HOH A 3 403 443 HOH HOH . 
S 7 HOH A 4 404 427 HOH HOH . 
S 7 HOH A 5 405 480 HOH HOH . 
S 7 HOH A 6 406 429 HOH HOH . 
S 7 HOH A 7 407 481 HOH HOH . 
S 7 HOH A 8 408 401 HOH HOH . 
S 7 HOH A 9 409 449 HOH HOH . 
S 7 HOH A 10 410 451 HOH HOH . 
S 7 HOH A 11 411 475 HOH HOH . 
S 7 HOH A 12 412 415 HOH HOH . 
S 7 HOH A 13 413 426 HOH HOH . 
S 7 HOH A 14 414 424 HOH HOH . 
S 7 HOH A 15 415 407 HOH HOH . 
T 7 HOH B 1 101 465 HOH HOH . 
T 7 HOH B 2 102 477 HOH HOH . 
T 7 HOH B 3 103 430 HOH HOH . 
T 7 HOH B 4 104 441 HOH HOH . 
T 7 HOH B 5 105 454 HOH HOH . 
T 7 HOH B 6 106 467 HOH HOH . 
T 7 HOH B 7 107 412 HOH HOH . 
T 7 HOH B 8 108 461 HOH HOH . 
T 7 HOH B 9 109 425 HOH HOH . 
T 7 HOH B 10 110 452 HOH HOH . 
U 7 HOH C 1 101 431 HOH HOH . 
V 7 HOH D 1 401 439 HOH HOH . 
V 7 HOH D 2 402 408 HOH HOH . 
V 7 HOH D 3 403 418 HOH HOH . 
V 7 HOH D 4 404 464 HOH HOH . 
V 7 HOH D 5 405 478 HOH HOH . 
V 7 HOH D 6 406 470 HOH HOH . 
V 7 HOH D 7 407 410 HOH HOH . 
W 7 HOH E 1 301 421 HOH HOH . 
W 7 HOH E 2 302 437 HOH HOH . 
W 7 HOH E 3 303 474 HOH HOH . 
W 7 HOH E 4 304 435 HOH HOH . 
W 7 HOH E 5 305 405 HOH HOH . 
W 7 HOH E 6 306 463 HOH HOH . 
W 7 HOH E 7 307 404 HOH HOH . 
W 7 HOH E 8 308 448 HOH HOH . 
W 7 HOH E 9 309 432 HOH HOH . 
W 7 HOH E 10 310 455 HOH HOH . 
X 7 HOH F 1 401 484 HOH HOH . 
X 7 HOH F 2 402 476 HOH HOH . 
X 7 HOH F 3 403 447 HOH HOH . 
X 7 HOH F 4 404 479 HOH HOH . 
X 7 HOH F 5 405 473 HOH HOH . 
X 7 HOH F 6 406 482 HOH HOH . 
X 7 HOH F 7 407 460 HOH HOH . 
X 7 HOH F 8 408 417 HOH HOH . 
X 7 HOH F 9 409 436 HOH HOH . 
X 7 HOH F 10 410 466 HOH HOH . 
X 7 HOH F 11 411 457 HOH HOH . 
X 7 HOH F 12 412 428 HOH HOH . 
X 7 HOH F 13 413 413 HOH HOH . 
X 7 HOH F 14 414 471 HOH HOH . 
X 7 HOH F 15 415 450 HOH HOH . 
X 7 HOH F 16 416 402 HOH HOH . 
Y 7 HOH G 1 101 445 HOH HOH . 
Y 7 HOH G 2 102 468 HOH HOH . 
Y 7 HOH G 3 103 456 HOH HOH . 
Y 7 HOH G 4 104 423 HOH HOH . 
Y 7 HOH G 5 105 434 HOH HOH . 
Y 7 HOH G 6 106 438 HOH HOH . 
Z 7 HOH H 1 101 416 HOH HOH . 
AA 7 HOH I 1 401 422 HOH HOH . 
AA 7 HOH I 2 402 453 HOH HOH . 
AA 7 HOH I 3 403 442 HOH HOH . 
AA 7 HOH I 4 404 419 HOH HOH . 
BA 7 HOH J 1 401 433 HOH HOH . 
BA 7 HOH J 2 402 472 HOH HOH . 
BA 7 HOH J 3 403 420 HOH HOH . 
BA 7 HOH J 4 404 469 HOH HOH . 
BA 7 HOH J 5 405 403 HOH HOH . 
BA 7 HOH J 6 406 446 HOH HOH . 
BA 7 HOH J 7 407 483 HOH HOH . 
BA 7 HOH J 8 408 414 HOH HOH . 
BA 7 HOH J 9 409 411 HOH HOH . 
BA 7 HOH J 10 410 462 HOH HOH . 
BA 7 HOH J 11 411 444 HOH HOH . 
BA 7 HOH J 12 412 458 HOH HOH . 
BA 7 HOH J 13 413 440 HOH HOH . 
BA 7 HOH J 14 414 406 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . L 6 27.177 -0.658 0.161 1 101.98 ? S SO4 302 A 1 
HETATM 2 O O1 SO4 . . . L 6 28.369 -1.023 -0.645 1 104.74 ? O1 SO4 302 A 1 
HETATM 3 O O2 SO4 . . . L 6 26.406 -1.888 0.488 1 103.94 ? O2 SO4 302 A 1 
HETATM 4 O O3 SO4 . . . L 6 27.597 0.032 1.413 1 99.67 ? O3 SO4 302 A 1 
HETATM 5 O O4 SO4 . . . L 6 26.322 0.227 -0.664 1 84.8 ? O4 SO4 302 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           5 
#