data_5C09 # _model_server_result.job_id wKm2mJhVXFlXEiy7eNgtHg _model_server_result.datetime_utc '2024-11-01 15:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":302}' # _entry.id 5C09 # _exptl.entry_id 5C09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.91 _cell.angle_beta 98.31 _cell.angle_gamma 96.52 _cell.entry_id 5C09 _cell.length_a 43.83 _cell.length_b 100.07 _cell.length_c 122.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,S,T,U,V,W 1 1 F,G,H,I,J,O,P,Q,R,X,Y,Z,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 21 D CYS 23 1_555 D SG CYS 87 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf5 D SG CYS 157 D CYS 159 1_555 E SG CYS 173 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 E SG CYS 23 E CYS 23 1_555 E SG CYS 92 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf7 E SG CYS 147 E CYS 147 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf9 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf10 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf11 I SG CYS 21 I CYS 23 1_555 I SG CYS 87 I CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf12 I SG CYS 132 I CYS 134 1_555 I SG CYS 182 I CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf13 I SG CYS 157 I CYS 159 1_555 J SG CYS 173 J CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf14 J SG CYS 23 J CYS 23 1_555 J SG CYS 92 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 J SG CYS 147 J CYS 147 1_555 J SG CYS 212 J CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 5C09 _atom_sites.fract_transf_matrix[1][1] 0.022815 _atom_sites.fract_transf_matrix[1][2] 0.002608 _atom_sites.fract_transf_matrix[1][3] 0.003731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010058 _atom_sites.fract_transf_matrix[2][3] 0.001413 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 SO4 A 1 301 301 SO4 SO4 . L 6 SO4 A 1 302 302 SO4 SO4 . M 6 SO4 A 1 303 304 SO4 SO4 . N 6 SO4 D 1 301 306 SO4 SO4 . O 6 SO4 F 1 301 307 SO4 SO4 . P 6 SO4 F 1 302 308 SO4 SO4 . Q 6 SO4 I 1 301 303 SO4 SO4 . R 6 SO4 J 1 301 305 SO4 SO4 . S 7 HOH A 1 401 409 HOH HOH . S 7 HOH A 2 402 459 HOH HOH . S 7 HOH A 3 403 443 HOH HOH . S 7 HOH A 4 404 427 HOH HOH . S 7 HOH A 5 405 480 HOH HOH . S 7 HOH A 6 406 429 HOH HOH . S 7 HOH A 7 407 481 HOH HOH . S 7 HOH A 8 408 401 HOH HOH . S 7 HOH A 9 409 449 HOH HOH . S 7 HOH A 10 410 451 HOH HOH . S 7 HOH A 11 411 475 HOH HOH . S 7 HOH A 12 412 415 HOH HOH . S 7 HOH A 13 413 426 HOH HOH . S 7 HOH A 14 414 424 HOH HOH . S 7 HOH A 15 415 407 HOH HOH . T 7 HOH B 1 101 465 HOH HOH . T 7 HOH B 2 102 477 HOH HOH . T 7 HOH B 3 103 430 HOH HOH . T 7 HOH B 4 104 441 HOH HOH . T 7 HOH B 5 105 454 HOH HOH . T 7 HOH B 6 106 467 HOH HOH . T 7 HOH B 7 107 412 HOH HOH . T 7 HOH B 8 108 461 HOH HOH . T 7 HOH B 9 109 425 HOH HOH . T 7 HOH B 10 110 452 HOH HOH . U 7 HOH C 1 101 431 HOH HOH . V 7 HOH D 1 401 439 HOH HOH . V 7 HOH D 2 402 408 HOH HOH . V 7 HOH D 3 403 418 HOH HOH . V 7 HOH D 4 404 464 HOH HOH . V 7 HOH D 5 405 478 HOH HOH . V 7 HOH D 6 406 470 HOH HOH . V 7 HOH D 7 407 410 HOH HOH . W 7 HOH E 1 301 421 HOH HOH . W 7 HOH E 2 302 437 HOH HOH . W 7 HOH E 3 303 474 HOH HOH . W 7 HOH E 4 304 435 HOH HOH . W 7 HOH E 5 305 405 HOH HOH . W 7 HOH E 6 306 463 HOH HOH . W 7 HOH E 7 307 404 HOH HOH . W 7 HOH E 8 308 448 HOH HOH . W 7 HOH E 9 309 432 HOH HOH . W 7 HOH E 10 310 455 HOH HOH . X 7 HOH F 1 401 484 HOH HOH . X 7 HOH F 2 402 476 HOH HOH . X 7 HOH F 3 403 447 HOH HOH . X 7 HOH F 4 404 479 HOH HOH . X 7 HOH F 5 405 473 HOH HOH . X 7 HOH F 6 406 482 HOH HOH . X 7 HOH F 7 407 460 HOH HOH . X 7 HOH F 8 408 417 HOH HOH . X 7 HOH F 9 409 436 HOH HOH . X 7 HOH F 10 410 466 HOH HOH . X 7 HOH F 11 411 457 HOH HOH . X 7 HOH F 12 412 428 HOH HOH . X 7 HOH F 13 413 413 HOH HOH . X 7 HOH F 14 414 471 HOH HOH . X 7 HOH F 15 415 450 HOH HOH . X 7 HOH F 16 416 402 HOH HOH . Y 7 HOH G 1 101 445 HOH HOH . Y 7 HOH G 2 102 468 HOH HOH . Y 7 HOH G 3 103 456 HOH HOH . Y 7 HOH G 4 104 423 HOH HOH . Y 7 HOH G 5 105 434 HOH HOH . Y 7 HOH G 6 106 438 HOH HOH . Z 7 HOH H 1 101 416 HOH HOH . AA 7 HOH I 1 401 422 HOH HOH . AA 7 HOH I 2 402 453 HOH HOH . AA 7 HOH I 3 403 442 HOH HOH . AA 7 HOH I 4 404 419 HOH HOH . BA 7 HOH J 1 401 433 HOH HOH . BA 7 HOH J 2 402 472 HOH HOH . BA 7 HOH J 3 403 420 HOH HOH . BA 7 HOH J 4 404 469 HOH HOH . BA 7 HOH J 5 405 403 HOH HOH . BA 7 HOH J 6 406 446 HOH HOH . BA 7 HOH J 7 407 483 HOH HOH . BA 7 HOH J 8 408 414 HOH HOH . BA 7 HOH J 9 409 411 HOH HOH . BA 7 HOH J 10 410 462 HOH HOH . BA 7 HOH J 11 411 444 HOH HOH . BA 7 HOH J 12 412 458 HOH HOH . BA 7 HOH J 13 413 440 HOH HOH . BA 7 HOH J 14 414 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . P 6 9.305 -2.385 -45.926 1 79.68 ? S SO4 302 F 1 HETATM 2 O O1 SO4 . . . P 6 9.416 -3.532 -46.87 1 76.63 ? O1 SO4 302 F 1 HETATM 3 O O2 SO4 . . . P 6 8.186 -1.499 -46.331 1 77.01 ? O2 SO4 302 F 1 HETATM 4 O O3 SO4 . . . P 6 9.128 -2.848 -44.503 1 74.62 ? O3 SO4 302 F 1 HETATM 5 O O4 SO4 . . . P 6 10.521 -1.576 -46.091 1 84.02 ? O4 SO4 302 F 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #