data_5C0A
#
_model_server_result.job_id            OGFoKTsBR_zTE1FtnOgv-Q 
_model_server_result.datetime_utc      '2024-11-24 09:34:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c0a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":304}' 
#
_entry.id    5C0A 
#
_exptl.entry_id    5C0A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.67 
_cell.angle_beta          98.58 
_cell.angle_gamma         95.8 
_cell.entry_id            5C0A 
_cell.length_a            43.88 
_cell.length_b            100.02 
_cell.length_c            123.28 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C0A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,KA,LA,MA,NA,OA 1 1 
F,G,H,I,J,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,PA,QA,RA,SA,TA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 O N N 
? 6 P N N 
? 6 R N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 DA N N 
? 6 EA N N 
? 6 FA N N 
? 6 HA N N 
? 6 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 21 D CYS 23 1_555 D SG CYS 87 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
disulf ? disulf5 D SG CYS 132 D CYS 134 1_555 D SG CYS 182 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf6 D SG CYS 157 D CYS 159 1_555 E SG CYS 173 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 92 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf8 E SG CYS 147 E CYS 147 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf9 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
disulf ? disulf10 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf11 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 I SG CYS 21 I CYS 23 1_555 I SG CYS 87 I CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
disulf ? disulf13 I SG CYS 132 I CYS 134 1_555 I SG CYS 182 I CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf14 I SG CYS 157 I CYS 159 1_555 J SG CYS 173 J CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf15 J SG CYS 23 J CYS 23 1_555 J SG CYS 92 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf16 J SG CYS 147 J CYS 147 1_555 J SG CYS 212 J CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5C0A 
_atom_sites.fract_transf_matrix[1][1]    0.022789 
_atom_sites.fract_transf_matrix[1][2]    0.002315 
_atom_sites.fract_transf_matrix[1][3]    0.003781 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010049 
_atom_sites.fract_transf_matrix[2][3]    0.001353 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 EDO A 1 301 311 EDO EDO . 
L 6 EDO A 1 302 314 EDO EDO . 
M 7 SO4 A 1 303 334 SO4 SO4 . 
N 8 GOL B 1 101 305 GOL GOL . 
O 6 EDO D 1 201 312 EDO EDO . 
P 6 EDO D 1 202 316 EDO EDO . 
Q 7 SO4 D 1 203 331 SO4 SO4 . 
R 6 EDO E 1 301 315 EDO EDO . 
S 7 SO4 E 1 302 332 SO4 SO4 . 
T 7 SO4 E 1 303 337 SO4 SO4 . 
U 7 SO4 E 1 304 338 SO4 SO4 . 
V 8 GOL F 1 301 301 GOL GOL . 
W 8 GOL F 1 302 303 GOL GOL . 
X 6 EDO F 1 303 313 EDO EDO . 
Y 6 EDO F 1 304 318 EDO EDO . 
Z 6 EDO F 1 305 323 EDO EDO . 
AA 7 SO4 F 1 306 333 SO4 SO4 . 
BA 8 GOL G 1 101 302 GOL GOL . 
CA 7 SO4 G 1 102 335 SO4 SO4 . 
DA 6 EDO H 1 101 319 EDO EDO . 
EA 6 EDO H 1 102 321 EDO EDO . 
FA 6 EDO I 1 201 320 EDO EDO . 
GA 8 GOL J 1 301 304 GOL GOL . 
HA 6 EDO J 1 302 317 EDO EDO . 
IA 6 EDO J 1 303 322 EDO EDO . 
JA 7 SO4 J 1 304 336 SO4 SO4 . 
KA 9 HOH A 1 401 552 HOH HOH . 
KA 9 HOH A 2 402 493 HOH HOH . 
KA 9 HOH A 3 403 431 HOH HOH . 
KA 9 HOH A 4 404 534 HOH HOH . 
KA 9 HOH A 5 405 474 HOH HOH . 
KA 9 HOH A 6 406 488 HOH HOH . 
KA 9 HOH A 7 407 420 HOH HOH . 
KA 9 HOH A 8 408 512 HOH HOH . 
KA 9 HOH A 9 409 441 HOH HOH . 
KA 9 HOH A 10 410 483 HOH HOH . 
KA 9 HOH A 11 411 508 HOH HOH . 
KA 9 HOH A 12 412 540 HOH HOH . 
KA 9 HOH A 13 413 507 HOH HOH . 
KA 9 HOH A 14 414 532 HOH HOH . 
KA 9 HOH A 15 415 500 HOH HOH . 
KA 9 HOH A 16 416 475 HOH HOH . 
KA 9 HOH A 17 417 480 HOH HOH . 
KA 9 HOH A 18 418 559 HOH HOH . 
LA 9 HOH B 1 201 453 HOH HOH . 
LA 9 HOH B 2 202 437 HOH HOH . 
LA 9 HOH B 3 203 419 HOH HOH . 
LA 9 HOH B 4 204 404 HOH HOH . 
LA 9 HOH B 5 205 518 HOH HOH . 
LA 9 HOH B 6 206 455 HOH HOH . 
MA 9 HOH C 1 101 467 HOH HOH . 
MA 9 HOH C 2 102 506 HOH HOH . 
MA 9 HOH C 3 103 487 HOH HOH . 
MA 9 HOH C 4 104 553 HOH HOH . 
NA 9 HOH D 1 301 523 HOH HOH . 
NA 9 HOH D 2 302 457 HOH HOH . 
NA 9 HOH D 3 303 555 HOH HOH . 
NA 9 HOH D 4 304 436 HOH HOH . 
NA 9 HOH D 5 305 443 HOH HOH . 
NA 9 HOH D 6 306 550 HOH HOH . 
NA 9 HOH D 7 307 426 HOH HOH . 
NA 9 HOH D 8 308 448 HOH HOH . 
OA 9 HOH E 1 401 515 HOH HOH . 
OA 9 HOH E 2 402 412 HOH HOH . 
OA 9 HOH E 3 403 499 HOH HOH . 
OA 9 HOH E 4 404 430 HOH HOH . 
OA 9 HOH E 5 405 432 HOH HOH . 
OA 9 HOH E 6 406 476 HOH HOH . 
OA 9 HOH E 7 407 469 HOH HOH . 
OA 9 HOH E 8 408 428 HOH HOH . 
OA 9 HOH E 9 409 465 HOH HOH . 
OA 9 HOH E 10 410 468 HOH HOH . 
OA 9 HOH E 11 411 546 HOH HOH . 
OA 9 HOH E 12 412 442 HOH HOH . 
OA 9 HOH E 13 413 497 HOH HOH . 
OA 9 HOH E 14 414 505 HOH HOH . 
OA 9 HOH E 15 415 408 HOH HOH . 
OA 9 HOH E 16 416 522 HOH HOH . 
OA 9 HOH E 17 417 418 HOH HOH . 
OA 9 HOH E 18 418 401 HOH HOH . 
OA 9 HOH E 19 419 423 HOH HOH . 
OA 9 HOH E 20 420 481 HOH HOH . 
OA 9 HOH E 21 421 504 HOH HOH . 
OA 9 HOH E 22 422 494 HOH HOH . 
OA 9 HOH E 23 423 567 HOH HOH . 
OA 9 HOH E 24 424 407 HOH HOH . 
OA 9 HOH E 25 425 452 HOH HOH . 
OA 9 HOH E 26 426 519 HOH HOH . 
OA 9 HOH E 27 427 535 HOH HOH . 
OA 9 HOH E 28 428 543 HOH HOH . 
OA 9 HOH E 29 429 551 HOH HOH . 
OA 9 HOH E 30 430 416 HOH HOH . 
OA 9 HOH E 31 431 531 HOH HOH . 
OA 9 HOH E 32 432 513 HOH HOH . 
PA 9 HOH F 1 401 527 HOH HOH . 
PA 9 HOH F 2 402 561 HOH HOH . 
PA 9 HOH F 3 403 477 HOH HOH . 
PA 9 HOH F 4 404 498 HOH HOH . 
PA 9 HOH F 5 405 482 HOH HOH . 
PA 9 HOH F 6 406 485 HOH HOH . 
PA 9 HOH F 7 407 417 HOH HOH . 
PA 9 HOH F 8 408 435 HOH HOH . 
PA 9 HOH F 9 409 472 HOH HOH . 
PA 9 HOH F 10 410 570 HOH HOH . 
PA 9 HOH F 11 411 490 HOH HOH . 
PA 9 HOH F 12 412 409 HOH HOH . 
PA 9 HOH F 13 413 433 HOH HOH . 
PA 9 HOH F 14 414 434 HOH HOH . 
PA 9 HOH F 15 415 403 HOH HOH . 
PA 9 HOH F 16 416 526 HOH HOH . 
PA 9 HOH F 17 417 445 HOH HOH . 
PA 9 HOH F 18 418 529 HOH HOH . 
PA 9 HOH F 19 419 438 HOH HOH . 
PA 9 HOH F 20 420 492 HOH HOH . 
PA 9 HOH F 21 421 462 HOH HOH . 
PA 9 HOH F 22 422 478 HOH HOH . 
PA 9 HOH F 23 423 509 HOH HOH . 
PA 9 HOH F 24 424 548 HOH HOH . 
PA 9 HOH F 25 425 560 HOH HOH . 
PA 9 HOH F 26 426 501 HOH HOH . 
PA 9 HOH F 27 427 425 HOH HOH . 
PA 9 HOH F 28 428 439 HOH HOH . 
PA 9 HOH F 29 429 547 HOH HOH . 
PA 9 HOH F 30 430 484 HOH HOH . 
PA 9 HOH F 31 431 414 HOH HOH . 
PA 9 HOH F 32 432 459 HOH HOH . 
PA 9 HOH F 33 433 539 HOH HOH . 
PA 9 HOH F 34 434 520 HOH HOH . 
PA 9 HOH F 35 435 471 HOH HOH . 
PA 9 HOH F 36 436 566 HOH HOH . 
PA 9 HOH F 37 437 511 HOH HOH . 
PA 9 HOH F 38 438 564 HOH HOH . 
PA 9 HOH F 39 439 516 HOH HOH . 
PA 9 HOH F 40 440 461 HOH HOH . 
PA 9 HOH F 41 441 496 HOH HOH . 
PA 9 HOH F 42 442 525 HOH HOH . 
PA 9 HOH F 43 443 450 HOH HOH . 
PA 9 HOH F 44 444 447 HOH HOH . 
PA 9 HOH F 45 445 538 HOH HOH . 
PA 9 HOH F 46 446 558 HOH HOH . 
PA 9 HOH F 47 447 456 HOH HOH . 
PA 9 HOH F 48 448 491 HOH HOH . 
QA 9 HOH G 1 201 486 HOH HOH . 
QA 9 HOH G 2 202 429 HOH HOH . 
QA 9 HOH G 3 203 565 HOH HOH . 
QA 9 HOH G 4 204 544 HOH HOH . 
QA 9 HOH G 5 205 545 HOH HOH . 
QA 9 HOH G 6 206 562 HOH HOH . 
QA 9 HOH G 7 207 524 HOH HOH . 
QA 9 HOH G 8 208 542 HOH HOH . 
QA 9 HOH G 9 209 427 HOH HOH . 
QA 9 HOH G 10 210 440 HOH HOH . 
QA 9 HOH G 11 211 533 HOH HOH . 
QA 9 HOH G 12 212 458 HOH HOH . 
RA 9 HOH H 1 201 557 HOH HOH . 
RA 9 HOH H 2 202 406 HOH HOH . 
RA 9 HOH H 3 203 410 HOH HOH . 
RA 9 HOH H 4 204 473 HOH HOH . 
RA 9 HOH H 5 205 502 HOH HOH . 
RA 9 HOH H 6 206 454 HOH HOH . 
RA 9 HOH H 7 207 489 HOH HOH . 
RA 9 HOH H 8 208 402 HOH HOH . 
SA 9 HOH I 1 301 415 HOH HOH . 
SA 9 HOH I 2 302 495 HOH HOH . 
SA 9 HOH I 3 303 568 HOH HOH . 
SA 9 HOH I 4 304 464 HOH HOH . 
SA 9 HOH I 5 305 549 HOH HOH . 
SA 9 HOH I 6 306 466 HOH HOH . 
SA 9 HOH I 7 307 569 HOH HOH . 
SA 9 HOH I 8 308 422 HOH HOH . 
SA 9 HOH I 9 309 444 HOH HOH . 
SA 9 HOH I 10 310 556 HOH HOH . 
SA 9 HOH I 11 311 541 HOH HOH . 
SA 9 HOH I 12 312 537 HOH HOH . 
SA 9 HOH I 13 313 514 HOH HOH . 
SA 9 HOH I 14 314 528 HOH HOH . 
SA 9 HOH I 15 315 536 HOH HOH . 
SA 9 HOH I 16 316 554 HOH HOH . 
TA 9 HOH J 1 401 503 HOH HOH . 
TA 9 HOH J 2 402 510 HOH HOH . 
TA 9 HOH J 3 403 451 HOH HOH . 
TA 9 HOH J 4 404 421 HOH HOH . 
TA 9 HOH J 5 405 563 HOH HOH . 
TA 9 HOH J 6 406 521 HOH HOH . 
TA 9 HOH J 7 407 405 HOH HOH . 
TA 9 HOH J 8 408 460 HOH HOH . 
TA 9 HOH J 9 409 413 HOH HOH . 
TA 9 HOH J 10 410 424 HOH HOH . 
TA 9 HOH J 11 411 463 HOH HOH . 
TA 9 HOH J 12 412 411 HOH HOH . 
TA 9 HOH J 13 413 530 HOH HOH . 
TA 9 HOH J 14 414 517 HOH HOH . 
TA 9 HOH J 15 415 470 HOH HOH . 
TA 9 HOH J 16 416 446 HOH HOH . 
TA 9 HOH J 17 417 449 HOH HOH . 
TA 9 HOH J 18 418 479 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . Y 6 -11.838 23.087 46.051 1 61.25 ? C1 EDO 304 F 1 
HETATM 2 O O1 EDO . . . Y 6 -12.506 23.718 47.146 1 57.61 ? O1 EDO 304 F 1 
HETATM 3 C C2 EDO . . . Y 6 -11.122 21.852 46.625 1 58.16 ? C2 EDO 304 F 1 
HETATM 4 O O2 EDO . . . Y 6 -11.048 20.804 45.654 1 57.61 ? O2 EDO 304 F 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#