data_5C0I # _model_server_result.job_id ipcrJf7tEYRpUBqtgYGAOg _model_server_result.datetime_utc '2024-11-30 22:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":101}' # _entry.id 5C0I # _exptl.entry_id 5C0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.67 _cell.angle_gamma 90 _cell.entry_id 5C0I _cell.length_a 55.7 _cell.length_b 79.74 _cell.length_c 58.08 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.091 ? disulf ? disulf4 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc1 B OD1 ASN 84 B ASN 83 1_555 M CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc2 B O HIS 85 B HIS 84 1_555 M CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc3 B O LEU 88 B LEU 87 1_555 M CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 M CA CA . B CA 101 1_555 V O HOH . B HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc5 M CA CA . B CA 101 1_555 V O HOH . B HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 M CA CA . B CA 101 1_555 V O HOH . B HOH 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5C0I _atom_sites.fract_transf_matrix[1][1] 0.017953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 303 EDO EDO . E 4 EDO A 1 302 304 EDO EDO . F 4 EDO A 1 303 307 EDO EDO . G 4 EDO A 1 304 308 EDO EDO . H 4 EDO A 1 305 310 EDO EDO . I 5 GOL A 1 306 322 GOL GOL . J 5 GOL A 1 307 323 GOL GOL . K 6 SO4 A 1 308 331 SO4 SO4 . L 6 SO4 A 1 309 332 SO4 SO4 . M 7 CA B 1 101 101 CA CA . N 4 EDO B 1 102 301 EDO EDO . O 4 EDO B 1 103 302 EDO EDO . P 4 EDO B 1 104 305 EDO EDO . Q 4 EDO B 1 105 306 EDO EDO . R 4 EDO B 1 106 309 EDO EDO . S 5 GOL B 1 107 321 GOL GOL . T 5 GOL B 1 108 324 GOL GOL . U 8 HOH A 1 401 511 HOH HOH . U 8 HOH A 2 402 497 HOH HOH . U 8 HOH A 3 403 641 HOH HOH . U 8 HOH A 4 404 654 HOH HOH . U 8 HOH A 5 405 557 HOH HOH . U 8 HOH A 6 406 550 HOH HOH . U 8 HOH A 7 407 501 HOH HOH . U 8 HOH A 8 408 657 HOH HOH . U 8 HOH A 9 409 623 HOH HOH . U 8 HOH A 10 410 599 HOH HOH . U 8 HOH A 11 411 503 HOH HOH . U 8 HOH A 12 412 416 HOH HOH . U 8 HOH A 13 413 496 HOH HOH . U 8 HOH A 14 414 560 HOH HOH . U 8 HOH A 15 415 656 HOH HOH . U 8 HOH A 16 416 664 HOH HOH . U 8 HOH A 17 417 524 HOH HOH . U 8 HOH A 18 418 635 HOH HOH . U 8 HOH A 19 419 588 HOH HOH . U 8 HOH A 20 420 600 HOH HOH . U 8 HOH A 21 421 448 HOH HOH . U 8 HOH A 22 422 453 HOH HOH . U 8 HOH A 23 423 421 HOH HOH . U 8 HOH A 24 424 425 HOH HOH . U 8 HOH A 25 425 460 HOH HOH . U 8 HOH A 26 426 646 HOH HOH . U 8 HOH A 27 427 530 HOH HOH . U 8 HOH A 28 428 552 HOH HOH . U 8 HOH A 29 429 543 HOH HOH . U 8 HOH A 30 430 587 HOH HOH . U 8 HOH A 31 431 609 HOH HOH . U 8 HOH A 32 432 505 HOH HOH . U 8 HOH A 33 433 506 HOH HOH . U 8 HOH A 34 434 551 HOH HOH . U 8 HOH A 35 435 604 HOH HOH . U 8 HOH A 36 436 415 HOH HOH . U 8 HOH A 37 437 598 HOH HOH . U 8 HOH A 38 438 426 HOH HOH . U 8 HOH A 39 439 440 HOH HOH . U 8 HOH A 40 440 534 HOH HOH . U 8 HOH A 41 441 630 HOH HOH . U 8 HOH A 42 442 624 HOH HOH . U 8 HOH A 43 443 451 HOH HOH . U 8 HOH A 44 444 418 HOH HOH . U 8 HOH A 45 445 576 HOH HOH . U 8 HOH A 46 446 434 HOH HOH . U 8 HOH A 47 447 563 HOH HOH . U 8 HOH A 48 448 405 HOH HOH . U 8 HOH A 49 449 482 HOH HOH . U 8 HOH A 50 450 632 HOH HOH . U 8 HOH A 51 451 647 HOH HOH . U 8 HOH A 52 452 516 HOH HOH . U 8 HOH A 53 453 445 HOH HOH . U 8 HOH A 54 454 487 HOH HOH . U 8 HOH A 55 455 476 HOH HOH . U 8 HOH A 56 456 573 HOH HOH . U 8 HOH A 57 457 594 HOH HOH . U 8 HOH A 58 458 619 HOH HOH . U 8 HOH A 59 459 437 HOH HOH . U 8 HOH A 60 460 592 HOH HOH . U 8 HOH A 61 461 419 HOH HOH . U 8 HOH A 62 462 621 HOH HOH . U 8 HOH A 63 463 666 HOH HOH . U 8 HOH A 64 464 479 HOH HOH . U 8 HOH A 65 465 495 HOH HOH . U 8 HOH A 66 466 565 HOH HOH . U 8 HOH A 67 467 590 HOH HOH . U 8 HOH A 68 468 614 HOH HOH . U 8 HOH A 69 469 484 HOH HOH . U 8 HOH A 70 470 413 HOH HOH . U 8 HOH A 71 471 589 HOH HOH . U 8 HOH A 72 472 529 HOH HOH . U 8 HOH A 73 473 606 HOH HOH . U 8 HOH A 74 474 438 HOH HOH . U 8 HOH A 75 475 455 HOH HOH . U 8 HOH A 76 476 649 HOH HOH . U 8 HOH A 77 477 466 HOH HOH . U 8 HOH A 78 478 417 HOH HOH . U 8 HOH A 79 479 436 HOH HOH . U 8 HOH A 80 480 655 HOH HOH . U 8 HOH A 81 481 443 HOH HOH . U 8 HOH A 82 482 456 HOH HOH . U 8 HOH A 83 483 464 HOH HOH . U 8 HOH A 84 484 490 HOH HOH . U 8 HOH A 85 485 411 HOH HOH . U 8 HOH A 86 486 450 HOH HOH . U 8 HOH A 87 487 489 HOH HOH . U 8 HOH A 88 488 435 HOH HOH . U 8 HOH A 89 489 424 HOH HOH . U 8 HOH A 90 490 622 HOH HOH . U 8 HOH A 91 491 494 HOH HOH . U 8 HOH A 92 492 470 HOH HOH . U 8 HOH A 93 493 429 HOH HOH . U 8 HOH A 94 494 442 HOH HOH . U 8 HOH A 95 495 626 HOH HOH . U 8 HOH A 96 496 640 HOH HOH . U 8 HOH A 97 497 601 HOH HOH . U 8 HOH A 98 498 465 HOH HOH . U 8 HOH A 99 499 667 HOH HOH . U 8 HOH A 100 500 523 HOH HOH . U 8 HOH A 101 501 447 HOH HOH . U 8 HOH A 102 502 562 HOH HOH . U 8 HOH A 103 503 471 HOH HOH . U 8 HOH A 104 504 652 HOH HOH . U 8 HOH A 105 505 401 HOH HOH . U 8 HOH A 106 506 645 HOH HOH . U 8 HOH A 107 507 432 HOH HOH . U 8 HOH A 108 508 454 HOH HOH . U 8 HOH A 109 509 422 HOH HOH . U 8 HOH A 110 510 409 HOH HOH . U 8 HOH A 111 511 439 HOH HOH . U 8 HOH A 112 512 518 HOH HOH . U 8 HOH A 113 513 597 HOH HOH . U 8 HOH A 114 514 467 HOH HOH . U 8 HOH A 115 515 616 HOH HOH . U 8 HOH A 116 516 613 HOH HOH . U 8 HOH A 117 517 586 HOH HOH . U 8 HOH A 118 518 663 HOH HOH . U 8 HOH A 119 519 660 HOH HOH . U 8 HOH A 120 520 548 HOH HOH . U 8 HOH A 121 521 570 HOH HOH . U 8 HOH A 122 522 410 HOH HOH . U 8 HOH A 123 523 403 HOH HOH . U 8 HOH A 124 524 483 HOH HOH . U 8 HOH A 125 525 441 HOH HOH . U 8 HOH A 126 526 566 HOH HOH . U 8 HOH A 127 527 407 HOH HOH . U 8 HOH A 128 528 472 HOH HOH . U 8 HOH A 129 529 651 HOH HOH . U 8 HOH A 130 530 644 HOH HOH . U 8 HOH A 131 531 420 HOH HOH . U 8 HOH A 132 532 444 HOH HOH . U 8 HOH A 133 533 402 HOH HOH . U 8 HOH A 134 534 617 HOH HOH . U 8 HOH A 135 535 493 HOH HOH . U 8 HOH A 136 536 486 HOH HOH . U 8 HOH A 137 537 669 HOH HOH . U 8 HOH A 138 538 608 HOH HOH . U 8 HOH A 139 539 574 HOH HOH . U 8 HOH A 140 540 406 HOH HOH . U 8 HOH A 141 541 554 HOH HOH . U 8 HOH A 142 542 602 HOH HOH . U 8 HOH A 143 543 631 HOH HOH . U 8 HOH A 144 544 627 HOH HOH . U 8 HOH A 145 545 537 HOH HOH . U 8 HOH A 146 546 593 HOH HOH . U 8 HOH A 147 547 474 HOH HOH . U 8 HOH A 148 548 580 HOH HOH . U 8 HOH A 149 549 605 HOH HOH . U 8 HOH A 150 550 463 HOH HOH . U 8 HOH A 151 551 611 HOH HOH . U 8 HOH A 152 552 498 HOH HOH . U 8 HOH A 153 553 527 HOH HOH . U 8 HOH A 154 554 653 HOH HOH . U 8 HOH A 155 555 559 HOH HOH . U 8 HOH A 156 556 567 HOH HOH . U 8 HOH A 157 557 531 HOH HOH . U 8 HOH A 158 558 509 HOH HOH . U 8 HOH A 159 559 462 HOH HOH . U 8 HOH A 160 560 478 HOH HOH . U 8 HOH A 161 561 661 HOH HOH . U 8 HOH A 162 562 508 HOH HOH . U 8 HOH A 163 563 545 HOH HOH . U 8 HOH A 164 564 629 HOH HOH . U 8 HOH A 165 565 536 HOH HOH . U 8 HOH A 166 566 522 HOH HOH . U 8 HOH A 167 567 636 HOH HOH . U 8 HOH A 168 568 603 HOH HOH . U 8 HOH A 169 569 532 HOH HOH . U 8 HOH A 170 570 499 HOH HOH . U 8 HOH A 171 571 556 HOH HOH . U 8 HOH A 172 572 638 HOH HOH . U 8 HOH A 173 573 575 HOH HOH . U 8 HOH A 174 574 633 HOH HOH . U 8 HOH A 175 575 569 HOH HOH . U 8 HOH A 176 576 581 HOH HOH . U 8 HOH A 177 577 507 HOH HOH . U 8 HOH A 178 578 583 HOH HOH . U 8 HOH A 179 579 670 HOH HOH . U 8 HOH A 180 580 533 HOH HOH . U 8 HOH A 181 581 513 HOH HOH . U 8 HOH A 182 582 584 HOH HOH . U 8 HOH A 183 583 659 HOH HOH . U 8 HOH A 184 584 571 HOH HOH . U 8 HOH A 185 585 488 HOH HOH . U 8 HOH A 186 586 572 HOH HOH . U 8 HOH A 187 587 541 HOH HOH . U 8 HOH A 188 588 643 HOH HOH . U 8 HOH A 189 589 480 HOH HOH . V 8 HOH B 1 201 535 HOH HOH . V 8 HOH B 2 202 473 HOH HOH . V 8 HOH B 3 203 427 HOH HOH . V 8 HOH B 4 204 515 HOH HOH . V 8 HOH B 5 205 517 HOH HOH . V 8 HOH B 6 206 639 HOH HOH . V 8 HOH B 7 207 553 HOH HOH . V 8 HOH B 8 208 547 HOH HOH . V 8 HOH B 9 209 492 HOH HOH . V 8 HOH B 10 210 502 HOH HOH . V 8 HOH B 11 211 468 HOH HOH . V 8 HOH B 12 212 521 HOH HOH . V 8 HOH B 13 213 544 HOH HOH . V 8 HOH B 14 214 404 HOH HOH . V 8 HOH B 15 215 512 HOH HOH . V 8 HOH B 16 216 628 HOH HOH . V 8 HOH B 17 217 595 HOH HOH . V 8 HOH B 18 218 634 HOH HOH . V 8 HOH B 19 219 549 HOH HOH . V 8 HOH B 20 220 637 HOH HOH . V 8 HOH B 21 221 510 HOH HOH . V 8 HOH B 22 222 618 HOH HOH . V 8 HOH B 23 223 650 HOH HOH . V 8 HOH B 24 224 423 HOH HOH . V 8 HOH B 25 225 430 HOH HOH . V 8 HOH B 26 226 591 HOH HOH . V 8 HOH B 27 227 607 HOH HOH . V 8 HOH B 28 228 469 HOH HOH . V 8 HOH B 29 229 668 HOH HOH . V 8 HOH B 30 230 610 HOH HOH . V 8 HOH B 31 231 625 HOH HOH . V 8 HOH B 32 232 500 HOH HOH . V 8 HOH B 33 233 520 HOH HOH . V 8 HOH B 34 234 525 HOH HOH . V 8 HOH B 35 235 431 HOH HOH . V 8 HOH B 36 236 558 HOH HOH . V 8 HOH B 37 237 658 HOH HOH . V 8 HOH B 38 238 540 HOH HOH . V 8 HOH B 39 239 449 HOH HOH . V 8 HOH B 40 240 662 HOH HOH . V 8 HOH B 41 241 620 HOH HOH . V 8 HOH B 42 242 539 HOH HOH . V 8 HOH B 43 243 414 HOH HOH . V 8 HOH B 44 244 642 HOH HOH . V 8 HOH B 45 245 408 HOH HOH . V 8 HOH B 46 246 615 HOH HOH . V 8 HOH B 47 247 491 HOH HOH . V 8 HOH B 48 248 514 HOH HOH . V 8 HOH B 49 249 457 HOH HOH . V 8 HOH B 50 250 485 HOH HOH . V 8 HOH B 51 251 446 HOH HOH . V 8 HOH B 52 252 568 HOH HOH . V 8 HOH B 53 253 665 HOH HOH . V 8 HOH B 54 254 458 HOH HOH . V 8 HOH B 55 255 596 HOH HOH . V 8 HOH B 56 256 519 HOH HOH . V 8 HOH B 57 257 412 HOH HOH . V 8 HOH B 58 258 504 HOH HOH . V 8 HOH B 59 259 461 HOH HOH . V 8 HOH B 60 260 564 HOH HOH . V 8 HOH B 61 261 612 HOH HOH . V 8 HOH B 62 262 585 HOH HOH . V 8 HOH B 63 263 538 HOH HOH . V 8 HOH B 64 264 433 HOH HOH . V 8 HOH B 65 265 578 HOH HOH . V 8 HOH B 66 266 542 HOH HOH . V 8 HOH B 67 267 555 HOH HOH . V 8 HOH B 68 268 582 HOH HOH . V 8 HOH B 69 269 475 HOH HOH . V 8 HOH B 70 270 561 HOH HOH . V 8 HOH B 71 271 579 HOH HOH . W 8 HOH C 1 101 526 HOH HOH . W 8 HOH C 2 102 648 HOH HOH . W 8 HOH C 3 103 459 HOH HOH . W 8 HOH C 4 104 528 HOH HOH . W 8 HOH C 5 105 428 HOH HOH . W 8 HOH C 6 106 481 HOH HOH . W 8 HOH C 7 107 452 HOH HOH . W 8 HOH C 8 108 546 HOH HOH . W 8 HOH C 9 109 477 HOH HOH . W 8 HOH C 10 110 577 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 7 _atom_site.Cartn_x -29.264 _atom_site.Cartn_y 17.157 _atom_site.Cartn_z 73.363 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #