data_5C0J
#
_model_server_result.job_id            F5nf4caCg66vAAzTxPt_Dw 
_model_server_result.datetime_utc      '2024-11-25 01:58:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":102}' 
#
_entry.id    5C0J 
#
_exptl.entry_id    5C0J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.81 
_cell.angle_gamma         90 
_cell.entry_id            5C0J 
_cell.length_a            56.29 
_cell.length_b            80.13 
_cell.length_c            56.95 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf3 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 B O HIS 85 B HIS 84 1_555 K CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc2 B O LEU 88 B LEU 87 1_555 K CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc3 K CA CA . B CA 101 1_555 T O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc4 K CA CA . B CA 101 1_555 T O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc5 K CA CA . B CA 101 1_555 T O HOH . B HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5C0J 
_atom_sites.fract_transf_matrix[1][1]    0.017765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008592 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01248 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 301 303 EDO EDO . 
E 4 EDO A 1 302 304 EDO EDO . 
F 4 EDO A 1 303 305 EDO EDO . 
G 4 EDO A 1 304 306 EDO EDO . 
H 4 EDO A 1 305 307 EDO EDO . 
I 5 SO4 A 1 306 331 SO4 SO4 . 
J 5 SO4 A 1 307 332 SO4 SO4 . 
K 6 CA B 1 101 101 CA CA . 
L 4 EDO B 1 102 302 EDO EDO . 
M 4 EDO B 1 103 308 EDO EDO . 
N 4 EDO B 1 104 310 EDO EDO . 
O 7 GOL B 1 105 321 GOL GOL . 
P 4 EDO C 1 301 301 EDO EDO . 
Q 4 EDO C 1 302 309 EDO EDO . 
R 4 EDO C 1 303 311 EDO EDO . 
S 8 HOH A 1 401 434 HOH HOH . 
S 8 HOH A 2 402 495 HOH HOH . 
S 8 HOH A 3 403 412 HOH HOH . 
S 8 HOH A 4 404 460 HOH HOH . 
S 8 HOH A 5 405 515 HOH HOH . 
S 8 HOH A 6 406 450 HOH HOH . 
S 8 HOH A 7 407 499 HOH HOH . 
S 8 HOH A 8 408 451 HOH HOH . 
S 8 HOH A 9 409 431 HOH HOH . 
S 8 HOH A 10 410 439 HOH HOH . 
S 8 HOH A 11 411 445 HOH HOH . 
S 8 HOH A 12 412 409 HOH HOH . 
S 8 HOH A 13 413 414 HOH HOH . 
S 8 HOH A 14 414 453 HOH HOH . 
S 8 HOH A 15 415 440 HOH HOH . 
S 8 HOH A 16 416 407 HOH HOH . 
S 8 HOH A 17 417 411 HOH HOH . 
S 8 HOH A 18 418 504 HOH HOH . 
S 8 HOH A 19 419 461 HOH HOH . 
S 8 HOH A 20 420 448 HOH HOH . 
S 8 HOH A 21 421 458 HOH HOH . 
S 8 HOH A 22 422 418 HOH HOH . 
S 8 HOH A 23 423 426 HOH HOH . 
S 8 HOH A 24 424 436 HOH HOH . 
S 8 HOH A 25 425 423 HOH HOH . 
S 8 HOH A 26 426 507 HOH HOH . 
S 8 HOH A 27 427 443 HOH HOH . 
S 8 HOH A 28 428 449 HOH HOH . 
S 8 HOH A 29 429 478 HOH HOH . 
S 8 HOH A 30 430 462 HOH HOH . 
S 8 HOH A 31 431 432 HOH HOH . 
S 8 HOH A 32 432 512 HOH HOH . 
S 8 HOH A 33 433 485 HOH HOH . 
S 8 HOH A 34 434 429 HOH HOH . 
S 8 HOH A 35 435 500 HOH HOH . 
S 8 HOH A 36 436 491 HOH HOH . 
S 8 HOH A 37 437 415 HOH HOH . 
S 8 HOH A 38 438 484 HOH HOH . 
S 8 HOH A 39 439 437 HOH HOH . 
S 8 HOH A 40 440 447 HOH HOH . 
S 8 HOH A 41 441 506 HOH HOH . 
S 8 HOH A 42 442 518 HOH HOH . 
S 8 HOH A 43 443 401 HOH HOH . 
S 8 HOH A 44 444 457 HOH HOH . 
S 8 HOH A 45 445 419 HOH HOH . 
S 8 HOH A 46 446 422 HOH HOH . 
S 8 HOH A 47 447 494 HOH HOH . 
S 8 HOH A 48 448 459 HOH HOH . 
S 8 HOH A 49 449 502 HOH HOH . 
S 8 HOH A 50 450 430 HOH HOH . 
S 8 HOH A 51 451 438 HOH HOH . 
S 8 HOH A 52 452 408 HOH HOH . 
S 8 HOH A 53 453 452 HOH HOH . 
S 8 HOH A 54 454 441 HOH HOH . 
S 8 HOH A 55 455 486 HOH HOH . 
S 8 HOH A 56 456 410 HOH HOH . 
S 8 HOH A 57 457 496 HOH HOH . 
S 8 HOH A 58 458 413 HOH HOH . 
S 8 HOH A 59 459 492 HOH HOH . 
S 8 HOH A 60 460 421 HOH HOH . 
S 8 HOH A 61 461 402 HOH HOH . 
S 8 HOH A 62 462 424 HOH HOH . 
S 8 HOH A 63 463 467 HOH HOH . 
S 8 HOH A 64 464 476 HOH HOH . 
S 8 HOH A 65 465 516 HOH HOH . 
S 8 HOH A 66 466 406 HOH HOH . 
S 8 HOH A 67 467 501 HOH HOH . 
S 8 HOH A 68 468 455 HOH HOH . 
S 8 HOH A 69 469 520 HOH HOH . 
S 8 HOH A 70 470 474 HOH HOH . 
S 8 HOH A 71 471 428 HOH HOH . 
S 8 HOH A 72 472 446 HOH HOH . 
S 8 HOH A 73 473 488 HOH HOH . 
S 8 HOH A 74 474 403 HOH HOH . 
S 8 HOH A 75 475 511 HOH HOH . 
S 8 HOH A 76 476 498 HOH HOH . 
S 8 HOH A 77 477 490 HOH HOH . 
S 8 HOH A 78 478 475 HOH HOH . 
S 8 HOH A 79 479 405 HOH HOH . 
S 8 HOH A 80 480 514 HOH HOH . 
S 8 HOH A 81 481 469 HOH HOH . 
S 8 HOH A 82 482 472 HOH HOH . 
S 8 HOH A 83 483 468 HOH HOH . 
S 8 HOH A 84 484 465 HOH HOH . 
S 8 HOH A 85 485 513 HOH HOH . 
S 8 HOH A 86 486 466 HOH HOH . 
S 8 HOH A 87 487 477 HOH HOH . 
S 8 HOH A 88 488 454 HOH HOH . 
S 8 HOH A 89 489 420 HOH HOH . 
S 8 HOH A 90 490 483 HOH HOH . 
S 8 HOH A 91 491 404 HOH HOH . 
T 8 HOH B 1 201 463 HOH HOH . 
T 8 HOH B 2 202 521 HOH HOH . 
T 8 HOH B 3 203 479 HOH HOH . 
T 8 HOH B 4 204 435 HOH HOH . 
T 8 HOH B 5 205 425 HOH HOH . 
T 8 HOH B 6 206 427 HOH HOH . 
T 8 HOH B 7 207 417 HOH HOH . 
T 8 HOH B 8 208 464 HOH HOH . 
T 8 HOH B 9 209 505 HOH HOH . 
T 8 HOH B 10 210 471 HOH HOH . 
T 8 HOH B 11 211 481 HOH HOH . 
T 8 HOH B 12 212 523 HOH HOH . 
T 8 HOH B 13 213 482 HOH HOH . 
T 8 HOH B 14 214 522 HOH HOH . 
T 8 HOH B 15 215 442 HOH HOH . 
T 8 HOH B 16 216 497 HOH HOH . 
T 8 HOH B 17 217 470 HOH HOH . 
T 8 HOH B 18 218 416 HOH HOH . 
T 8 HOH B 19 219 433 HOH HOH . 
T 8 HOH B 20 220 510 HOH HOH . 
T 8 HOH B 21 221 456 HOH HOH . 
T 8 HOH B 22 222 519 HOH HOH . 
T 8 HOH B 23 223 517 HOH HOH . 
T 8 HOH B 24 224 480 HOH HOH . 
T 8 HOH B 25 225 503 HOH HOH . 
T 8 HOH B 26 226 473 HOH HOH . 
T 8 HOH B 27 227 487 HOH HOH . 
T 8 HOH B 28 228 509 HOH HOH . 
T 8 HOH B 29 229 493 HOH HOH . 
T 8 HOH B 30 230 508 HOH HOH . 
U 8 HOH C 1 401 444 HOH HOH . 
U 8 HOH C 2 402 524 HOH HOH . 
U 8 HOH C 3 403 489 HOH HOH . 
U 8 HOH C 4 404 525 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 4 109.931 12.396 63.684 1 32.22 ? C1 EDO 102 B 1 
HETATM 2 O O1 EDO . . . L 4 109.402 13.609 64.168 1 36.36 ? O1 EDO 102 B 1 
HETATM 3 C C2 EDO . . . L 4 108.735 11.595 63.208 1 30.78 ? C2 EDO 102 B 1 
HETATM 4 O O2 EDO . . . L 4 109.148 10.251 63.094 1 26.63 ? O2 EDO 102 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           431 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#