data_5C0K
#
_model_server_result.job_id            vtSxe1DPEjCiATJ42YFWXg 
_model_server_result.datetime_utc      '2024-10-19 00:54:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c0k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5C0K 
#
_exptl.entry_id    5C0K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              188.247 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-{[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino}-1-oxopropan-2-aminium 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C0K 
_cell.length_a            71.43 
_cell.length_b            71.43 
_cell.length_c            104.99 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C0K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 56 A CYS 300 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A SG CYS 59 A CYS 303 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc3 A NE2 HIS 76 A HIS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc4 A SG CYS 83 A CYS 327 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
#
_chem_comp.formula           'C8 H18 N3 O2 1' 
_chem_comp.formula_weight    188.247 
_chem_comp.id                4WK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-{[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino}-1-oxopropan-2-aminium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N13 C11 4WK sing 1 n n 
C11 O12 4WK doub 2 n n 
C11 C4 4WK sing 3 n n 
C4 C2 4WK sing 4 n n 
C4 N5 4WK sing 5 n n 
C2 C3 4WK sing 6 n n 
C2 C1 4WK sing 7 n n 
N5 C6 4WK sing 8 n n 
O7 C6 4WK doub 9 n n 
C6 C8 4WK sing 10 n n 
C9 C8 4WK sing 11 n n 
C8 N10 4WK sing 12 n n 
C1 H14 4WK sing 13 n n 
C1 H16 4WK sing 14 n n 
C1 H15 4WK sing 15 n n 
C2 H17 4WK sing 16 n n 
C3 H20 4WK sing 17 n n 
C3 H19 4WK sing 18 n n 
C3 H18 4WK sing 19 n n 
C8 H23 4WK sing 20 n n 
C4 H21 4WK sing 21 n n 
N5 H22 4WK sing 22 n n 
C9 H26 4WK sing 23 n n 
C9 H24 4WK sing 24 n n 
C9 H25 4WK sing 25 n n 
N10 H27 4WK sing 26 n n 
N10 H28 4WK sing 27 n n 
N10 H29 4WK sing 28 n n 
N13 H31 4WK sing 29 n n 
N13 H30 4WK sing 30 n n 
#
_atom_sites.entry_id                     5C0K 
_atom_sites.fract_transf_matrix[1][1]    0.014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 1 ZN ZN . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 2 EDO EDO . 
E 4 4WK A 1 404 1 4WK L01 . 
F 5 HOH A 1 501 100 HOH HOH . 
F 5 HOH A 2 502 24 HOH HOH . 
F 5 HOH A 3 503 123 HOH HOH . 
F 5 HOH A 4 504 125 HOH HOH . 
F 5 HOH A 5 505 9 HOH HOH . 
F 5 HOH A 6 506 38 HOH HOH . 
F 5 HOH A 7 507 108 HOH HOH . 
F 5 HOH A 8 508 22 HOH HOH . 
F 5 HOH A 9 509 2 HOH HOH . 
F 5 HOH A 10 510 6 HOH HOH . 
F 5 HOH A 11 511 105 HOH HOH . 
F 5 HOH A 12 512 14 HOH HOH . 
F 5 HOH A 13 513 3 HOH HOH . 
F 5 HOH A 14 514 104 HOH HOH . 
F 5 HOH A 15 515 26 HOH HOH . 
F 5 HOH A 16 516 57 HOH HOH . 
F 5 HOH A 17 517 18 HOH HOH . 
F 5 HOH A 18 518 11 HOH HOH . 
F 5 HOH A 19 519 12 HOH HOH . 
F 5 HOH A 20 520 78 HOH HOH . 
F 5 HOH A 21 521 67 HOH HOH . 
F 5 HOH A 22 522 56 HOH HOH . 
F 5 HOH A 23 523 51 HOH HOH . 
F 5 HOH A 24 524 1 HOH HOH . 
F 5 HOH A 25 525 23 HOH HOH . 
F 5 HOH A 26 526 66 HOH HOH . 
F 5 HOH A 27 527 47 HOH HOH . 
F 5 HOH A 28 528 35 HOH HOH . 
F 5 HOH A 29 529 17 HOH HOH . 
F 5 HOH A 30 530 31 HOH HOH . 
F 5 HOH A 31 531 34 HOH HOH . 
F 5 HOH A 32 532 106 HOH HOH . 
F 5 HOH A 33 533 110 HOH HOH . 
F 5 HOH A 34 534 4 HOH HOH . 
F 5 HOH A 35 535 48 HOH HOH . 
F 5 HOH A 36 536 113 HOH HOH . 
F 5 HOH A 37 537 41 HOH HOH . 
F 5 HOH A 38 538 13 HOH HOH . 
F 5 HOH A 39 539 5 HOH HOH . 
F 5 HOH A 40 540 65 HOH HOH . 
F 5 HOH A 41 541 86 HOH HOH . 
F 5 HOH A 42 542 10 HOH HOH . 
F 5 HOH A 43 543 33 HOH HOH . 
F 5 HOH A 44 544 37 HOH HOH . 
F 5 HOH A 45 545 42 HOH HOH . 
F 5 HOH A 46 546 1 HOH HOH . 
F 5 HOH A 47 547 30 HOH HOH . 
F 5 HOH A 48 548 3 HOH HOH . 
F 5 HOH A 49 549 4 HOH HOH . 
F 5 HOH A 50 550 75 HOH HOH . 
F 5 HOH A 51 551 28 HOH HOH . 
F 5 HOH A 52 552 116 HOH HOH . 
F 5 HOH A 53 553 96 HOH HOH . 
F 5 HOH A 54 554 58 HOH HOH . 
F 5 HOH A 55 555 119 HOH HOH . 
F 5 HOH A 56 556 80 HOH HOH . 
F 5 HOH A 57 557 45 HOH HOH . 
F 5 HOH A 58 558 74 HOH HOH . 
F 5 HOH A 59 559 19 HOH HOH . 
F 5 HOH A 60 560 50 HOH HOH . 
F 5 HOH A 61 561 112 HOH HOH . 
F 5 HOH A 62 562 61 HOH HOH . 
F 5 HOH A 63 563 15 HOH HOH . 
F 5 HOH A 64 564 99 HOH HOH . 
F 5 HOH A 65 565 115 HOH HOH . 
F 5 HOH A 66 566 55 HOH HOH . 
F 5 HOH A 67 567 2 HOH HOH . 
F 5 HOH A 68 568 62 HOH HOH . 
F 5 HOH A 69 569 81 HOH HOH . 
F 5 HOH A 70 570 120 HOH HOH . 
F 5 HOH A 71 571 21 HOH HOH . 
F 5 HOH A 72 572 36 HOH HOH . 
F 5 HOH A 73 573 87 HOH HOH . 
F 5 HOH A 74 574 40 HOH HOH . 
F 5 HOH A 75 575 77 HOH HOH . 
F 5 HOH A 76 576 70 HOH HOH . 
F 5 HOH A 77 577 43 HOH HOH . 
F 5 HOH A 78 578 91 HOH HOH . 
F 5 HOH A 79 579 32 HOH HOH . 
F 5 HOH A 80 580 49 HOH HOH . 
F 5 HOH A 81 581 7 HOH HOH . 
F 5 HOH A 82 582 117 HOH HOH . 
F 5 HOH A 83 583 39 HOH HOH . 
F 5 HOH A 84 584 16 HOH HOH . 
F 5 HOH A 85 585 122 HOH HOH . 
F 5 HOH A 86 586 8 HOH HOH . 
F 5 HOH A 87 587 118 HOH HOH . 
F 5 HOH A 88 588 114 HOH HOH . 
F 5 HOH A 89 589 82 HOH HOH . 
F 5 HOH A 90 590 121 HOH HOH . 
F 5 HOH A 91 591 52 HOH HOH . 
F 5 HOH A 92 592 44 HOH HOH . 
F 5 HOH A 93 593 109 HOH HOH . 
F 5 HOH A 94 594 93 HOH HOH . 
F 5 HOH A 95 595 73 HOH HOH . 
F 5 HOH A 96 596 60 HOH HOH . 
F 5 HOH A 97 597 103 HOH HOH . 
F 5 HOH A 98 598 83 HOH HOH . 
F 5 HOH A 99 599 124 HOH HOH . 
F 5 HOH A 100 600 90 HOH HOH . 
F 5 HOH A 101 601 68 HOH HOH . 
F 5 HOH A 102 602 85 HOH HOH . 
F 5 HOH A 103 603 71 HOH HOH . 
F 5 HOH A 104 604 111 HOH HOH . 
F 5 HOH A 105 605 101 HOH HOH . 
F 5 HOH A 106 606 84 HOH HOH . 
F 5 HOH A 107 607 126 HOH HOH . 
F 5 HOH A 108 608 107 HOH HOH . 
F 5 HOH A 109 609 79 HOH HOH . 
F 5 HOH A 110 610 92 HOH HOH . 
F 5 HOH A 111 611 94 HOH HOH . 
F 5 HOH A 112 612 97 HOH HOH . 
F 5 HOH A 113 613 27 HOH HOH . 
F 5 HOH A 114 614 20 HOH HOH . 
F 5 HOH A 115 615 25 HOH HOH . 
F 5 HOH A 116 616 29 HOH HOH . 
F 5 HOH A 117 617 46 HOH HOH . 
F 5 HOH A 118 618 53 HOH HOH . 
F 5 HOH A 119 619 89 HOH HOH . 
F 5 HOH A 120 620 88 HOH HOH . 
F 5 HOH A 121 621 76 HOH HOH . 
F 5 HOH A 122 622 72 HOH HOH . 
F 5 HOH A 123 623 64 HOH HOH . 
F 5 HOH A 124 624 59 HOH HOH . 
F 5 HOH A 125 625 63 HOH HOH . 
F 5 HOH A 126 626 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4WK . . . E 4 -16.245 -16.097 -3.138 1 73.99 ? C1 4WK 404 A 1 
HETATM 2 C C2 4WK . . . E 4 -15.486 -16.846 -4.228 1 71.76 ? C2 4WK 404 A 1 
HETATM 3 C C3 4WK . . . E 4 -13.976 -16.639 -4.071 1 67.69 ? C3 4WK 404 A 1 
HETATM 4 C C6 4WK . . . E 4 -16.34 -19.3 -2.054 1 67.22 ? C6 4WK 404 A 1 
HETATM 5 C C8 4WK . . . E 4 -15.734 -20.045 -0.868 1 62.82 ? C8 4WK 404 A 1 
HETATM 6 C C11 4WK . . . E 4 -15.275 -19.055 -5.451 1 66.13 ? C11 4WK 404 A 1 
HETATM 7 C C4 4WK . . . E 4 -15.886 -18.336 -4.258 1 66.88 ? C4 4WK 404 A 1 
HETATM 8 N N5 4WK . . . E 4 -15.487 -19.021 -3.04 1 63.15 ? N5 4WK 404 A 1 
HETATM 9 O O7 4WK . . . E 4 -17.533 -18.99 -2.074 1 72.04 ? O7 4WK 404 A 1 
HETATM 10 C C9 4WK . . . E 4 -15.476 -21.51 -1.187 1 60.36 ? C9 4WK 404 A 1 
HETATM 11 N N10 4WK . . . E 4 -16.668 -19.936 0.285 1 63.95 1 N10 4WK 404 A 1 
HETATM 12 O O12 4WK . . . E 4 -14.168 -19.594 -5.346 1 59.89 ? O12 4WK 404 A 1 
HETATM 13 N N13 4WK . . . E 4 -15.991 -19.055 -6.565 1 71.27 ? N13 4WK 404 A 1 
HETATM 14 H H14 4WK . . . E 4 -16.296 -15.149 -3.369 1 74.4 ? H14 4WK 404 A 1 
HETATM 15 H H16 4WK . . . E 4 -17.149 -16.462 -3.059 1 74.12 ? H16 4WK 404 A 1 
HETATM 16 H H15 4WK . . . E 4 -15.776 -16.199 -2.285 1 74.06 ? H15 4WK 404 A 1 
HETATM 17 H H17 4WK . . . E 4 -15.752 -16.454 -5.097 1 71.69 ? H17 4WK 404 A 1 
HETATM 18 H H20 4WK . . . E 4 -13.528 -16.863 -4.91 1 66.92 ? H20 4WK 404 A 1 
HETATM 19 H H19 4WK . . . E 4 -13.798 -15.706 -3.848 1 67.97 ? H19 4WK 404 A 1 
HETATM 20 H H18 4WK . . . E 4 -13.641 -17.214 -3.359 1 67.33 ? H18 4WK 404 A 1 
HETATM 21 H H23 4WK . . . E 4 -14.889 -19.61 -0.618 1 62.41 ? H23 4WK 404 A 1 
HETATM 22 H H21 4WK . . . E 4 -16.867 -18.393 -4.34 1 66.72 ? H21 4WK 404 A 1 
HETATM 23 H H22 4WK . . . E 4 -14.678 -19.325 -2.986 1 63.27 ? H22 4WK 404 A 1 
HETATM 24 H H26 4WK . . . E 4 -15.223 -21.6 -2.127 1 60.88 ? H26 4WK 404 A 1 
HETATM 25 H H24 4WK . . . E 4 -16.286 -22.027 -1.017 1 59.48 ? H24 4WK 404 A 1 
HETATM 26 H H25 4WK . . . E 4 -14.753 -21.843 -0.622 1 60.06 ? H25 4WK 404 A 1 
HETATM 27 H H27 4WK . . . E 4 -17.484 -20.278 0.063 1 64.41 ? H27 4WK 404 A 1 
HETATM 28 H H28 4WK . . . E 4 -16.769 -19.047 0.531 1 64.5 ? H28 4WK 404 A 1 
HETATM 29 H H29 4WK . . . E 4 -16.342 -20.389 0.965 1 63.86 ? H29 4WK 404 A 1 
HETATM 30 H H31 4WK . . . E 4 -15.697 -19.523 -7.291 1 71.9 ? H31 4WK 404 A 1 
HETATM 31 H H30 4WK . . . E 4 -16.784 -18.621 -6.599 1 70.77 ? H30 4WK 404 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#