data_5C0O # _model_server_result.job_id rPAv44WbvrseTjKX4Oo93g _model_server_result.datetime_utc '2025-03-06 09:13:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5C0O # _exptl.entry_id 5C0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C0O _cell.length_a 76.54 _cell.length_b 79.86 _cell.length_c 184 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 264 n n N HN1 SAM sing 265 n n N HN2 SAM sing 266 n n CA C SAM sing 267 n n CA CB SAM sing 268 n n CA HA SAM sing 269 n n C O SAM doub 270 n n C OXT SAM sing 271 n n CB CG SAM sing 272 n n CB HB1 SAM sing 273 n n CB HB2 SAM sing 274 n n CG SD SAM sing 275 n n CG HG1 SAM sing 276 n n CG HG2 SAM sing 277 n n SD CE SAM sing 278 n n SD C5' SAM sing 279 n n CE HE1 SAM sing 280 n n CE HE2 SAM sing 281 n n CE HE3 SAM sing 282 n n C5' C4' SAM sing 283 n n C5' "H5'1" SAM sing 284 n n C5' "H5'2" SAM sing 285 n n C4' O4' SAM sing 286 n n C4' C3' SAM sing 287 n n C4' H4' SAM sing 288 n n O4' C1' SAM sing 289 n n C3' O3' SAM sing 290 n n C3' C2' SAM sing 291 n n C3' H3' SAM sing 292 n n O3' HO3' SAM sing 293 n n C2' O2' SAM sing 294 n n C2' C1' SAM sing 295 n n C2' H2' SAM sing 296 n n O2' HO2' SAM sing 297 n n C1' N9 SAM sing 298 n n C1' H1' SAM sing 299 n n N9 C8 SAM sing 300 n y N9 C4 SAM sing 301 n y C8 N7 SAM doub 302 n y C8 H8 SAM sing 303 n n N7 C5 SAM sing 304 n y C5 C6 SAM sing 305 n y C5 C4 SAM doub 306 n y C6 N6 SAM sing 307 n n C6 N1 SAM doub 308 n y N6 HN61 SAM sing 309 n n N6 HN62 SAM sing 310 n n N1 C2 SAM sing 311 n y C2 N3 SAM doub 312 n y C2 H2 SAM sing 313 n n N3 C4 SAM sing 314 n y # _atom_sites.entry_id 5C0O _atom_sites.fract_transf_matrix[1][1] 0.013065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAM E 1 301 1 SAM SAM . F 2 SAM F 1 301 4 SAM SAM . G 3 SO4 F 1 302 1 SO4 SO4 . H 2 SAM G 1 301 2 SAM SAM . I 2 SAM H 1 301 3 SAM SAM . J 4 HOH E 1 401 3 HOH HOH . J 4 HOH E 2 402 11 HOH HOH . J 4 HOH E 3 403 37 HOH HOH . J 4 HOH E 4 404 57 HOH HOH . J 4 HOH E 5 405 27 HOH HOH . J 4 HOH E 6 406 92 HOH HOH . J 4 HOH E 7 407 112 HOH HOH . J 4 HOH E 8 408 46 HOH HOH . J 4 HOH E 9 409 94 HOH HOH . J 4 HOH E 10 410 2 HOH HOH . J 4 HOH E 11 411 129 HOH HOH . J 4 HOH E 12 412 38 HOH HOH . J 4 HOH E 13 413 114 HOH HOH . J 4 HOH E 14 414 97 HOH HOH . J 4 HOH E 15 415 1 HOH HOH . J 4 HOH E 16 416 12 HOH HOH . J 4 HOH E 17 417 133 HOH HOH . J 4 HOH E 18 418 10 HOH HOH . J 4 HOH E 19 419 135 HOH HOH . J 4 HOH E 20 420 47 HOH HOH . J 4 HOH E 21 421 51 HOH HOH . J 4 HOH E 22 422 30 HOH HOH . J 4 HOH E 23 423 65 HOH HOH . J 4 HOH E 24 424 99 HOH HOH . J 4 HOH E 25 425 91 HOH HOH . J 4 HOH E 26 426 4 HOH HOH . J 4 HOH E 27 427 6 HOH HOH . J 4 HOH E 28 428 107 HOH HOH . J 4 HOH E 29 429 90 HOH HOH . J 4 HOH E 30 430 21 HOH HOH . J 4 HOH E 31 431 14 HOH HOH . J 4 HOH E 32 432 71 HOH HOH . J 4 HOH E 33 433 89 HOH HOH . J 4 HOH E 34 434 123 HOH HOH . J 4 HOH E 35 435 48 HOH HOH . J 4 HOH E 36 436 19 HOH HOH . J 4 HOH E 37 437 40 HOH HOH . J 4 HOH E 38 438 137 HOH HOH . J 4 HOH E 39 439 24 HOH HOH . J 4 HOH E 40 440 42 HOH HOH . J 4 HOH E 41 441 31 HOH HOH . J 4 HOH E 42 442 119 HOH HOH . J 4 HOH E 43 443 41 HOH HOH . J 4 HOH E 44 444 132 HOH HOH . K 4 HOH F 1 401 59 HOH HOH . K 4 HOH F 2 402 87 HOH HOH . K 4 HOH F 3 403 109 HOH HOH . K 4 HOH F 4 404 121 HOH HOH . K 4 HOH F 5 405 100 HOH HOH . K 4 HOH F 6 406 118 HOH HOH . K 4 HOH F 7 407 7 HOH HOH . K 4 HOH F 8 408 15 HOH HOH . K 4 HOH F 9 409 95 HOH HOH . K 4 HOH F 10 410 36 HOH HOH . K 4 HOH F 11 411 98 HOH HOH . K 4 HOH F 12 412 96 HOH HOH . K 4 HOH F 13 413 122 HOH HOH . K 4 HOH F 14 414 25 HOH HOH . K 4 HOH F 15 415 106 HOH HOH . K 4 HOH F 16 416 101 HOH HOH . K 4 HOH F 17 417 82 HOH HOH . K 4 HOH F 18 418 120 HOH HOH . K 4 HOH F 19 419 93 HOH HOH . K 4 HOH F 20 420 103 HOH HOH . K 4 HOH F 21 421 53 HOH HOH . K 4 HOH F 22 422 116 HOH HOH . K 4 HOH F 23 423 61 HOH HOH . K 4 HOH F 24 424 56 HOH HOH . K 4 HOH F 25 425 49 HOH HOH . K 4 HOH F 26 426 124 HOH HOH . K 4 HOH F 27 427 74 HOH HOH . L 4 HOH G 1 401 60 HOH HOH . L 4 HOH G 2 402 81 HOH HOH . L 4 HOH G 3 403 52 HOH HOH . L 4 HOH G 4 404 78 HOH HOH . L 4 HOH G 5 405 62 HOH HOH . L 4 HOH G 6 406 136 HOH HOH . L 4 HOH G 7 407 138 HOH HOH . L 4 HOH G 8 408 72 HOH HOH . L 4 HOH G 9 409 67 HOH HOH . L 4 HOH G 10 410 8 HOH HOH . L 4 HOH G 11 411 29 HOH HOH . L 4 HOH G 12 412 44 HOH HOH . L 4 HOH G 13 413 22 HOH HOH . L 4 HOH G 14 414 128 HOH HOH . L 4 HOH G 15 415 79 HOH HOH . L 4 HOH G 16 416 17 HOH HOH . L 4 HOH G 17 417 39 HOH HOH . L 4 HOH G 18 418 131 HOH HOH . L 4 HOH G 19 419 80 HOH HOH . L 4 HOH G 20 420 140 HOH HOH . L 4 HOH G 21 421 63 HOH HOH . L 4 HOH G 22 422 126 HOH HOH . L 4 HOH G 23 423 76 HOH HOH . L 4 HOH G 24 424 16 HOH HOH . L 4 HOH G 25 425 83 HOH HOH . L 4 HOH G 26 426 130 HOH HOH . L 4 HOH G 27 427 88 HOH HOH . L 4 HOH G 28 428 108 HOH HOH . L 4 HOH G 29 429 13 HOH HOH . L 4 HOH G 30 430 5 HOH HOH . L 4 HOH G 31 431 70 HOH HOH . L 4 HOH G 32 432 139 HOH HOH . L 4 HOH G 33 433 26 HOH HOH . L 4 HOH G 34 434 85 HOH HOH . L 4 HOH G 35 435 134 HOH HOH . L 4 HOH G 36 436 58 HOH HOH . M 4 HOH H 1 401 73 HOH HOH . M 4 HOH H 2 402 64 HOH HOH . M 4 HOH H 3 403 50 HOH HOH . M 4 HOH H 4 404 18 HOH HOH . M 4 HOH H 5 405 43 HOH HOH . M 4 HOH H 6 406 75 HOH HOH . M 4 HOH H 7 407 20 HOH HOH . M 4 HOH H 8 408 35 HOH HOH . M 4 HOH H 9 409 77 HOH HOH . M 4 HOH H 10 410 68 HOH HOH . M 4 HOH H 11 411 33 HOH HOH . M 4 HOH H 12 412 23 HOH HOH . M 4 HOH H 13 413 9 HOH HOH . M 4 HOH H 14 414 105 HOH HOH . M 4 HOH H 15 415 84 HOH HOH . M 4 HOH H 16 416 104 HOH HOH . M 4 HOH H 17 417 66 HOH HOH . M 4 HOH H 18 418 28 HOH HOH . M 4 HOH H 19 419 113 HOH HOH . M 4 HOH H 20 420 111 HOH HOH . M 4 HOH H 21 421 69 HOH HOH . M 4 HOH H 22 422 115 HOH HOH . M 4 HOH H 23 423 125 HOH HOH . M 4 HOH H 24 424 54 HOH HOH . M 4 HOH H 25 425 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . F 2 -4.851 0.62 4.459 1 76.51 ? N SAM 301 F 1 HETATM 2 C CA SAM . . . F 2 -3.518 0.613 5.047 1 81.47 ? CA SAM 301 F 1 HETATM 3 C C SAM . . . F 2 -3.325 -0.583 5.974 1 77.67 ? C SAM 301 F 1 HETATM 4 O O SAM . . . F 2 -2.932 -1.676 5.548 1 64.4 ? O SAM 301 F 1 HETATM 5 O OXT SAM . . . F 2 -3.577 -0.471 7.182 1 88.13 ? OXT SAM 301 F 1 HETATM 6 C CB SAM . . . F 2 -3.277 1.919 5.798 1 96.03 ? CB SAM 301 F 1 HETATM 7 C CG SAM . . . F 2 -2.786 3.054 4.908 1 87.8 ? CG SAM 301 F 1 HETATM 8 S SD SAM . . . F 2 -1.193 2.601 4.186 1 94.75 ? SD SAM 301 F 1 HETATM 9 C CE SAM . . . F 2 -0.095 3.1 5.532 1 66.74 ? CE SAM 301 F 1 HETATM 10 C C5' SAM . . . F 2 -0.905 3.882 2.938 1 89.95 ? C5' SAM 301 F 1 HETATM 11 C C4' SAM . . . F 2 0.576 4.033 2.599 1 93.52 ? C4' SAM 301 F 1 HETATM 12 O O4' SAM . . . F 2 0.739 4.279 1.214 1 85.01 ? O4' SAM 301 F 1 HETATM 13 C C3' SAM . . . F 2 1.226 5.184 3.353 1 91.54 ? C3' SAM 301 F 1 HETATM 14 O O3' SAM . . . F 2 2.009 4.7 4.419 1 98.61 ? O3' SAM 301 F 1 HETATM 15 C C2' SAM . . . F 2 2.095 5.886 2.332 1 88.04 ? C2' SAM 301 F 1 HETATM 16 O O2' SAM . . . F 2 3.443 5.493 2.511 1 89.83 ? O2' SAM 301 F 1 HETATM 17 C C1' SAM . . . F 2 1.604 5.373 0.989 1 86.76 ? C1' SAM 301 F 1 HETATM 18 N N9 SAM . . . F 2 0.822 6.377 0.251 1 100.24 ? N9 SAM 301 F 1 HETATM 19 C C8 SAM . . . F 2 -0.544 6.407 0.19 1 101.99 ? C8 SAM 301 F 1 HETATM 20 N N7 SAM . . . F 2 -0.926 7.453 -0.578 1 108.35 ? N7 SAM 301 F 1 HETATM 21 C C5 SAM . . . F 2 0.189 8.091 -1.007 1 107.09 ? C5 SAM 301 F 1 HETATM 22 C C6 SAM . . . F 2 0.371 9.21 -1.808 1 107.63 ? C6 SAM 301 F 1 HETATM 23 N N6 SAM . . . F 2 -0.682 9.855 -2.302 1 97.07 ? N6 SAM 301 F 1 HETATM 24 N N1 SAM . . . F 2 1.649 9.649 -2.088 1 103.98 ? N1 SAM 301 F 1 HETATM 25 C C2 SAM . . . F 2 2.737 8.974 -1.568 1 95.54 ? C2 SAM 301 F 1 HETATM 26 N N3 SAM . . . F 2 2.55 7.86 -0.773 1 91.49 ? N3 SAM 301 F 1 HETATM 27 C C4 SAM . . . F 2 1.296 7.423 -0.499 1 102.44 ? C4 SAM 301 F 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #