data_5C13
#
_model_server_result.job_id            GN79rHrKs2ckOzc4eiUdUw 
_model_server_result.datetime_utc      '2024-11-04 20:37:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1001}' 
#
_entry.id    5C13 
#
_exptl.entry_id    5C13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C13 
_cell.length_a            30.212 
_cell.length_b            50.105 
_cell.length_c            85.949 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J,M,N,Q,R,U,V 1 1 
C,D,G,H,K,L,O,P,S,T,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C THR 3 P THR 3 1_555 B N 4WQ 4 P 4WQ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B C 4WQ 4 P 4WQ 4 1_555 B N GLN 5 P GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 D C THR 3 D THR 3 1_555 D N 4WQ 4 D 4WQ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 D C 4WQ 4 D 4WQ 4 1_555 D N GLN 5 D GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale5 F C THR 3 F THR 3 1_555 F N 4WQ 4 F 4WQ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale6 F C 4WQ 4 F 4WQ 4 1_555 F N GLN 5 F GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 H C THR 3 H THR 3 1_555 H N 4WQ 4 H 4WQ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 H C 4WQ 4 H 4WQ 4 1_555 H N GLN 5 H GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 A SG CYS 17 A CYS 870 1_555 J ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 A SG CYS 20 A CYS 873 1_555 J ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc3 A SG CYS 32 A CYS 885 1_555 I ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc4 A SG CYS 35 A CYS 888 1_555 I ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc5 A ND1 HIS 40 A HIS 893 1_555 J ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc6 A SG CYS 43 A CYS 896 1_555 J ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 A SG CYS 58 A CYS 911 1_555 I ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc8 A SG CYS 61 A CYS 914 1_555 I ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc9 C SG CYS 17 C CYS 870 1_555 L ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc10 C SG CYS 20 C CYS 873 1_555 L ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc11 C SG CYS 32 C CYS 885 1_555 K ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc12 C SG CYS 35 C CYS 888 1_555 K ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc13 C ND1 HIS 40 C HIS 893 1_555 L ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc14 C SG CYS 43 C CYS 896 1_555 L ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc15 C SG CYS 58 C CYS 911 1_555 K ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc16 C SG CYS 61 C CYS 914 1_555 K ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc17 E SG CYS 17 E CYS 870 1_555 N ZN ZN . E ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc18 E SG CYS 20 E CYS 873 1_555 N ZN ZN . E ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc19 E SG CYS 32 E CYS 885 1_555 M ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc20 E SG CYS 35 E CYS 888 1_555 M ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc21 E ND1 HIS 40 E HIS 893 1_555 N ZN ZN . E ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc22 E SG CYS 43 E CYS 896 1_555 N ZN ZN . E ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc23 E SG CYS 58 E CYS 911 1_555 M ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc24 E SG CYS 61 E CYS 914 1_555 M ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc25 G SG CYS 17 G CYS 870 1_555 P ZN ZN . G ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc26 G SG CYS 20 G CYS 873 1_555 P ZN ZN . G ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc27 G SG CYS 32 G CYS 885 1_555 O ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc28 G SG CYS 35 G CYS 888 1_555 O ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc29 G ND1 HIS 40 G HIS 893 1_555 P ZN ZN . G ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc30 G SG CYS 43 G CYS 896 1_555 P ZN ZN . G ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc31 G SG CYS 58 G CYS 911 1_555 O ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc32 G SG CYS 61 G CYS 914 1_555 O ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C13 
_atom_sites.fract_transf_matrix[1][1]    0.033099 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019958 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ZN A 1 1001 940 ZN ZN . 
J 3 ZN A 1 1002 941 ZN ZN . 
K 3 ZN C 1 1001 942 ZN ZN . 
L 3 ZN C 1 1002 943 ZN ZN . 
M 3 ZN E 1 1001 944 ZN ZN . 
N 3 ZN E 1 1002 945 ZN ZN . 
O 3 ZN G 1 1001 946 ZN ZN . 
P 3 ZN G 1 1002 947 ZN ZN . 
Q 4 HOH A 1 1101 23 HOH HOH . 
Q 4 HOH A 2 1102 20 HOH HOH . 
Q 4 HOH A 3 1103 37 HOH HOH . 
Q 4 HOH A 4 1104 3 HOH HOH . 
Q 4 HOH A 5 1105 35 HOH HOH . 
Q 4 HOH A 6 1106 64 HOH HOH . 
Q 4 HOH A 7 1107 41 HOH HOH . 
Q 4 HOH A 8 1108 77 HOH HOH . 
Q 4 HOH A 9 1109 9 HOH HOH . 
Q 4 HOH A 10 1110 4 HOH HOH . 
Q 4 HOH A 11 1111 75 HOH HOH . 
Q 4 HOH A 12 1112 30 HOH HOH . 
Q 4 HOH A 13 1113 54 HOH HOH . 
Q 4 HOH A 14 1114 18 HOH HOH . 
Q 4 HOH A 15 1115 11 HOH HOH . 
Q 4 HOH A 16 1116 24 HOH HOH . 
Q 4 HOH A 17 1117 31 HOH HOH . 
Q 4 HOH A 18 1118 57 HOH HOH . 
R 4 HOH P 1 101 13 HOH HOH . 
R 4 HOH P 2 102 78 HOH HOH . 
R 4 HOH P 3 103 22 HOH HOH . 
S 4 HOH C 1 1101 8 HOH HOH . 
S 4 HOH C 2 1102 32 HOH HOH . 
S 4 HOH C 3 1103 73 HOH HOH . 
S 4 HOH C 4 1104 17 HOH HOH . 
S 4 HOH C 5 1105 19 HOH HOH . 
S 4 HOH C 6 1106 1 HOH HOH . 
S 4 HOH C 7 1107 69 HOH HOH . 
S 4 HOH C 8 1108 47 HOH HOH . 
S 4 HOH C 9 1109 10 HOH HOH . 
S 4 HOH C 10 1110 66 HOH HOH . 
S 4 HOH C 11 1111 50 HOH HOH . 
S 4 HOH C 12 1112 40 HOH HOH . 
S 4 HOH C 13 1113 55 HOH HOH . 
S 4 HOH C 14 1114 7 HOH HOH . 
S 4 HOH C 15 1115 21 HOH HOH . 
S 4 HOH C 16 1116 52 HOH HOH . 
S 4 HOH C 17 1117 48 HOH HOH . 
S 4 HOH C 18 1118 68 HOH HOH . 
S 4 HOH C 19 1119 39 HOH HOH . 
S 4 HOH C 20 1120 38 HOH HOH . 
S 4 HOH C 21 1121 51 HOH HOH . 
T 4 HOH D 1 101 16 HOH HOH . 
T 4 HOH D 2 102 58 HOH HOH . 
T 4 HOH D 3 103 34 HOH HOH . 
U 4 HOH E 1 1101 15 HOH HOH . 
U 4 HOH E 2 1102 67 HOH HOH . 
U 4 HOH E 3 1103 61 HOH HOH . 
U 4 HOH E 4 1104 42 HOH HOH . 
U 4 HOH E 5 1105 5 HOH HOH . 
U 4 HOH E 6 1106 6 HOH HOH . 
U 4 HOH E 7 1107 29 HOH HOH . 
U 4 HOH E 8 1108 12 HOH HOH . 
U 4 HOH E 9 1109 71 HOH HOH . 
U 4 HOH E 10 1110 27 HOH HOH . 
U 4 HOH E 11 1111 63 HOH HOH . 
U 4 HOH E 12 1112 62 HOH HOH . 
U 4 HOH E 13 1113 59 HOH HOH . 
U 4 HOH E 14 1114 36 HOH HOH . 
V 4 HOH F 1 101 28 HOH HOH . 
W 4 HOH G 1 1101 25 HOH HOH . 
W 4 HOH G 2 1102 76 HOH HOH . 
W 4 HOH G 3 1103 26 HOH HOH . 
W 4 HOH G 4 1104 46 HOH HOH . 
W 4 HOH G 5 1105 56 HOH HOH . 
W 4 HOH G 6 1106 53 HOH HOH . 
W 4 HOH G 7 1107 49 HOH HOH . 
W 4 HOH G 8 1108 2 HOH HOH . 
W 4 HOH G 9 1109 14 HOH HOH . 
W 4 HOH G 10 1110 44 HOH HOH . 
W 4 HOH G 11 1111 60 HOH HOH . 
W 4 HOH G 12 1112 65 HOH HOH . 
W 4 HOH G 13 1113 70 HOH HOH . 
W 4 HOH G 14 1114 72 HOH HOH . 
W 4 HOH G 15 1115 45 HOH HOH . 
W 4 HOH G 16 1116 43 HOH HOH . 
X 4 HOH H 1 101 74 HOH HOH . 
X 4 HOH H 2 102 33 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -12.508 
_atom_site.Cartn_y               -6.376 
_atom_site.Cartn_z               63.048 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.99 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#