data_5C14 # _model_server_result.job_id ETlcJX6jyHhw_Zpo0Tpqwg _model_server_result.datetime_utc '2024-12-21 15:11:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":303}' # _entry.id 5C14 # _exptl.entry_id 5C14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C14 _cell.length_a 104.01 _cell.length_b 104.01 _cell.length_c 281.834 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,O 1 1 B,K,L,M,N,P 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 30 1_555 A SG CYS 84 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 127 A CYS 125 1_555 A SG CYS 181 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 B SG CYS 32 B CYS 30 1_555 B SG CYS 84 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 B SG CYS 127 B CYS 125 1_555 B SG CYS 181 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A C ASP 13 A ASP 11 1_555 A N MSE 14 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 14 A MSE 12 1_555 A N LYS 15 A LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A ND2 ASN 27 A ASN 25 1_555 G C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 A ND2 ASN 59 A ASN 57 1_555 H C1 NAG . A NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 A ND2 ASN 126 A ASN 124 1_555 I C1 NAG . A NAG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? covale ? covale6 B ND2 ASN 59 B ASN 57 1_555 N C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.225 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 269 n n C1 O1 NAG sing 270 n n C1 O5 NAG sing 271 n n C1 H1 NAG sing 272 n n C2 C3 NAG sing 273 n n C2 N2 NAG sing 274 n n C2 H2 NAG sing 275 n n C3 C4 NAG sing 276 n n C3 O3 NAG sing 277 n n C3 H3 NAG sing 278 n n C4 C5 NAG sing 279 n n C4 O4 NAG sing 280 n n C4 H4 NAG sing 281 n n C5 C6 NAG sing 282 n n C5 O5 NAG sing 283 n n C5 H5 NAG sing 284 n n C6 O6 NAG sing 285 n n C6 H61 NAG sing 286 n n C6 H62 NAG sing 287 n n C7 C8 NAG sing 288 n n C7 N2 NAG sing 289 n n C7 O7 NAG doub 290 n n C8 H81 NAG sing 291 n n C8 H82 NAG sing 292 n n C8 H83 NAG sing 293 n n N2 HN2 NAG sing 294 n n O1 HO1 NAG sing 295 n n O3 HO3 NAG sing 296 n n O4 HO4 NAG sing 297 n n O6 HO6 NAG sing 298 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5C14 _atom_sites.fract_transf_matrix[1][1] 0.009614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 301 GOL GOL . D 3 GOL A 1 302 302 GOL GOL . E 3 GOL A 1 303 303 GOL GOL . F 4 CU A 1 304 304 CU CU . G 5 NAG A 1 305 305 NAG NAG . H 5 NAG A 1 306 306 NAG NAG . I 5 NAG A 1 307 307 NAG NAG . J 6 TRS A 1 308 308 TRS TRS . K 3 GOL B 1 301 301 GOL GOL . L 3 GOL B 1 302 302 GOL GOL . M 5 NAG B 1 303 303 NAG NAG . N 5 NAG B 1 304 304 NAG NAG . O 7 HOH A 1 401 401 HOH HOH . O 7 HOH A 2 402 402 HOH HOH . O 7 HOH A 3 403 403 HOH HOH . O 7 HOH A 4 404 404 HOH HOH . O 7 HOH A 5 405 405 HOH HOH . O 7 HOH A 6 406 406 HOH HOH . O 7 HOH A 7 407 407 HOH HOH . O 7 HOH A 8 408 408 HOH HOH . O 7 HOH A 9 409 409 HOH HOH . O 7 HOH A 10 410 410 HOH HOH . O 7 HOH A 11 411 411 HOH HOH . O 7 HOH A 12 412 412 HOH HOH . O 7 HOH A 13 413 413 HOH HOH . O 7 HOH A 14 414 414 HOH HOH . O 7 HOH A 15 415 415 HOH HOH . P 7 HOH B 1 401 401 HOH HOH . P 7 HOH B 2 402 402 HOH HOH . P 7 HOH B 3 403 403 HOH HOH . P 7 HOH B 4 404 404 HOH HOH . P 7 HOH B 5 405 405 HOH HOH . P 7 HOH B 6 406 406 HOH HOH . P 7 HOH B 7 407 407 HOH HOH . P 7 HOH B 8 408 408 HOH HOH . P 7 HOH B 9 409 409 HOH HOH . P 7 HOH B 10 410 410 HOH HOH . P 7 HOH B 11 411 411 HOH HOH . P 7 HOH B 12 412 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 5 -3.463 33.069 13.584 1 85.72 ? C1 NAG 303 B 1 HETATM 2 C C2 NAG . . . M 5 -4.817 32.462 13.937 1 89.84 ? C2 NAG 303 B 1 HETATM 3 C C3 NAG . . . M 5 -5.539 33.314 14.989 1 102.12 ? C3 NAG 303 B 1 HETATM 4 C C4 NAG . . . M 5 -4.639 33.559 16.201 1 99.18 ? C4 NAG 303 B 1 HETATM 5 C C5 NAG . . . M 5 -3.271 34.08 15.77 1 103.87 ? C5 NAG 303 B 1 HETATM 6 C C6 NAG . . . M 5 -2.281 34.125 16.919 1 116.88 ? C6 NAG 303 B 1 HETATM 7 C C7 NAG . . . M 5 -6.497 31.311 12.538 1 93.42 ? C7 NAG 303 B 1 HETATM 8 C C8 NAG . . . M 5 -7.226 31.313 11.237 1 87.79 ? C8 NAG 303 B 1 HETATM 9 N N2 NAG . . . M 5 -5.638 32.315 12.729 1 88.12 ? N2 NAG 303 B 1 HETATM 10 O O3 NAG . . . M 5 -6.72 32.644 15.415 1 113.41 ? O3 NAG 303 B 1 HETATM 11 O O4 NAG . . . M 5 -5.229 34.475 17.131 1 93.08 ? O4 NAG 303 B 1 HETATM 12 O O5 NAG . . . M 5 -2.699 33.218 14.773 1 93.71 ? O5 NAG 303 B 1 HETATM 13 O O6 NAG . . . M 5 -0.992 34.549 16.504 1 124.51 ? O6 NAG 303 B 1 HETATM 14 O O7 NAG . . . M 5 -6.689 30.444 13.375 1 107.08 ? O7 NAG 303 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #