data_5C14 # _model_server_result.job_id Q_2RhYNSo1_d0IgJKra1pg _model_server_result.datetime_utc '2024-12-21 14:55:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":308}' # _entry.id 5C14 # _exptl.entry_id 5C14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C14 _cell.length_a 104.01 _cell.length_b 104.01 _cell.length_c 281.834 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,O 1 1 B,K,L,M,N,P 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 30 1_555 A SG CYS 84 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 127 A CYS 125 1_555 A SG CYS 181 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 B SG CYS 32 B CYS 30 1_555 B SG CYS 84 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 B SG CYS 127 B CYS 125 1_555 B SG CYS 181 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A C ASP 13 A ASP 11 1_555 A N MSE 14 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 14 A MSE 12 1_555 A N LYS 15 A LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A ND2 ASN 27 A ASN 25 1_555 G C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 A ND2 ASN 59 A ASN 57 1_555 H C1 NAG . A NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 A ND2 ASN 126 A ASN 124 1_555 I C1 NAG . A NAG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? covale ? covale6 B ND2 ASN 59 B ASN 57 1_555 N C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.225 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 396 n n C C2 TRS sing 397 n n C C3 TRS sing 398 n n C N TRS sing 399 n n C1 O1 TRS sing 400 n n C1 H11 TRS sing 401 n n C1 H12 TRS sing 402 n n C2 O2 TRS sing 403 n n C2 H21 TRS sing 404 n n C2 H22 TRS sing 405 n n C3 O3 TRS sing 406 n n C3 H31 TRS sing 407 n n C3 H32 TRS sing 408 n n N HN1 TRS sing 409 n n N HN2 TRS sing 410 n n N HN3 TRS sing 411 n n O1 HO1 TRS sing 412 n n O2 HO2 TRS sing 413 n n O3 HO3 TRS sing 414 n n # _atom_sites.entry_id 5C14 _atom_sites.fract_transf_matrix[1][1] 0.009614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 301 GOL GOL . D 3 GOL A 1 302 302 GOL GOL . E 3 GOL A 1 303 303 GOL GOL . F 4 CU A 1 304 304 CU CU . G 5 NAG A 1 305 305 NAG NAG . H 5 NAG A 1 306 306 NAG NAG . I 5 NAG A 1 307 307 NAG NAG . J 6 TRS A 1 308 308 TRS TRS . K 3 GOL B 1 301 301 GOL GOL . L 3 GOL B 1 302 302 GOL GOL . M 5 NAG B 1 303 303 NAG NAG . N 5 NAG B 1 304 304 NAG NAG . O 7 HOH A 1 401 401 HOH HOH . O 7 HOH A 2 402 402 HOH HOH . O 7 HOH A 3 403 403 HOH HOH . O 7 HOH A 4 404 404 HOH HOH . O 7 HOH A 5 405 405 HOH HOH . O 7 HOH A 6 406 406 HOH HOH . O 7 HOH A 7 407 407 HOH HOH . O 7 HOH A 8 408 408 HOH HOH . O 7 HOH A 9 409 409 HOH HOH . O 7 HOH A 10 410 410 HOH HOH . O 7 HOH A 11 411 411 HOH HOH . O 7 HOH A 12 412 412 HOH HOH . O 7 HOH A 13 413 413 HOH HOH . O 7 HOH A 14 414 414 HOH HOH . O 7 HOH A 15 415 415 HOH HOH . P 7 HOH B 1 401 401 HOH HOH . P 7 HOH B 2 402 402 HOH HOH . P 7 HOH B 3 403 403 HOH HOH . P 7 HOH B 4 404 404 HOH HOH . P 7 HOH B 5 405 405 HOH HOH . P 7 HOH B 6 406 406 HOH HOH . P 7 HOH B 7 407 407 HOH HOH . P 7 HOH B 8 408 408 HOH HOH . P 7 HOH B 9 409 409 HOH HOH . P 7 HOH B 10 410 410 HOH HOH . P 7 HOH B 11 411 411 HOH HOH . P 7 HOH B 12 412 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . J 6 13.149 46.374 -3.142 1 94.68 ? C TRS 308 A 1 HETATM 2 C C1 TRS . . . J 6 12.132 46.851 -4.186 1 89.12 ? C1 TRS 308 A 1 HETATM 3 C C2 TRS . . . J 6 12.506 45.853 -1.85 1 102.8 ? C2 TRS 308 A 1 HETATM 4 C C3 TRS . . . J 6 14.145 47.473 -2.862 1 93.92 ? C3 TRS 308 A 1 HETATM 5 N N TRS . . . J 6 13.931 45.291 -3.733 1 89.12 ? N TRS 308 A 1 HETATM 6 O O1 TRS . . . J 6 11.714 48.186 -3.981 1 84.25 ? O1 TRS 308 A 1 HETATM 7 O O2 TRS . . . J 6 11.688 46.815 -1.203 1 107.16 ? O2 TRS 308 A 1 HETATM 8 O O3 TRS . . . J 6 14.494 48.028 -4.101 1 90.81 ? O3 TRS 308 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #