data_5C1M # _model_server_result.job_id UskeauMY2ClCvnEUR25o4Q _model_server_result.datetime_utc '2024-11-05 00:28:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5C1M # _exptl.entry_id 5C1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C1M _cell.length_a 44.43 _cell.length_b 144 _cell.length_c 209.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall 'I 2b 2c' _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 140 1_555 A SG CYS 166 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 22 B CYS 24 1_555 B SG CYS 94 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C LEU 5 A LEU 56 1_555 A N YCM 6 A YCM 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C YCM 6 A YCM 57 1_555 A N PRO 7 A PRO 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 314 n n C10 C9 OLC doub 315 n n C10 C11 OLC sing 316 n n C9 C8 OLC sing 317 n n C17 C16 OLC sing 318 z n C11 C12 OLC sing 319 n n C8 C7 OLC sing 320 n n C24 C22 OLC sing 321 n n C24 O25 OLC sing 322 n n C16 C15 OLC sing 323 n n C12 C13 OLC sing 324 n n C7 C6 OLC sing 325 n n C15 C14 OLC sing 326 n n C13 C14 OLC sing 327 n n C6 C5 OLC sing 328 n n C5 C4 OLC sing 329 n n C4 C3 OLC sing 330 n n C3 C2 OLC sing 331 n n C2 C1 OLC sing 332 n n C21 C22 OLC sing 333 n n C21 O20 OLC sing 334 n n C1 O19 OLC doub 335 n n C1 O20 OLC sing 336 n n C22 O23 OLC sing 337 n n C18 H18 OLC sing 338 n n C18 H18A OLC sing 339 n n C18 H18B OLC sing 340 n n C10 H10 OLC sing 341 n n C9 H9 OLC sing 342 n n C17 H17 OLC sing 343 n n C17 H17A OLC sing 344 n n C11 H11 OLC sing 345 n n C11 H11A OLC sing 346 n n C8 H8 OLC sing 347 n n C8 H8A OLC sing 348 n n C24 H24 OLC sing 349 n n C24 H24A OLC sing 350 n n C16 H16 OLC sing 351 n n C16 H16A OLC sing 352 n n C12 H12 OLC sing 353 n n C12 H12A OLC sing 354 n n C7 H7 OLC sing 355 n n C7 H7A OLC sing 356 n n C15 H15 OLC sing 357 n n C15 H15A OLC sing 358 n n C13 H13 OLC sing 359 n n C13 H13A OLC sing 360 n n C6 H6 OLC sing 361 n n C6 H6A OLC sing 362 n n C14 H14 OLC sing 363 n n C14 H14A OLC sing 364 n n C5 H5 OLC sing 365 n n C5 H5A OLC sing 366 n n C4 H4 OLC sing 367 n n C4 H4A OLC sing 368 n n C3 H3 OLC sing 369 n n C3 H3A OLC sing 370 n n C2 H2 OLC sing 371 n n C2 H2A OLC sing 372 n n C21 H21 OLC sing 373 n n C21 H21A OLC sing 374 n n C22 H22 OLC sing 375 n n O25 HO25 OLC sing 376 n n O23 HO23 OLC sing 377 n n # _atom_sites.entry_id 5C1M _atom_sites.fract_transf_matrix[1][1] 0.022507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OLC A 1 401 402 OLC OLC . D 3 OLC A 1 402 403 OLC OLC . E 4 CLR A 1 403 404 CLR CLR . F 5 PO4 A 1 404 405 PO4 PO4 . G 6 P6G A 1 405 406 P6G P6G . H 6 P6G A 1 406 407 P6G P6G . I 7 VF1 A 1 407 601 VF1 4VO . J 8 HOH A 1 501 501 HOH HOH . J 8 HOH A 2 502 502 HOH HOH . J 8 HOH A 3 503 508 HOH HOH . J 8 HOH A 4 504 509 HOH HOH . J 8 HOH A 5 505 514 HOH HOH . J 8 HOH A 6 506 506 HOH HOH . J 8 HOH A 7 507 516 HOH HOH . J 8 HOH A 8 508 505 HOH HOH . J 8 HOH A 9 509 512 HOH HOH . J 8 HOH A 10 510 504 HOH HOH . J 8 HOH A 11 511 513 HOH HOH . J 8 HOH A 12 512 515 HOH HOH . J 8 HOH A 13 513 510 HOH HOH . J 8 HOH A 14 514 511 HOH HOH . J 8 HOH A 15 515 503 HOH HOH . J 8 HOH A 16 516 520 HOH HOH . J 8 HOH A 17 517 517 HOH HOH . J 8 HOH A 18 518 507 HOH HOH . J 8 HOH A 19 519 521 HOH HOH . J 8 HOH A 20 520 529 HOH HOH . J 8 HOH A 21 521 524 HOH HOH . J 8 HOH A 22 522 518 HOH HOH . J 8 HOH A 23 523 535 HOH HOH . J 8 HOH A 24 524 519 HOH HOH . J 8 HOH A 25 525 526 HOH HOH . J 8 HOH A 26 526 523 HOH HOH . J 8 HOH A 27 527 522 HOH HOH . J 8 HOH A 28 528 525 HOH HOH . J 8 HOH A 29 529 539 HOH HOH . J 8 HOH A 30 530 532 HOH HOH . J 8 HOH A 31 531 527 HOH HOH . J 8 HOH A 32 532 534 HOH HOH . J 8 HOH A 33 533 533 HOH HOH . J 8 HOH A 34 534 536 HOH HOH . J 8 HOH A 35 535 545 HOH HOH . J 8 HOH A 36 536 547 HOH HOH . J 8 HOH A 37 537 530 HOH HOH . J 8 HOH A 38 538 528 HOH HOH . J 8 HOH A 39 539 549 HOH HOH . J 8 HOH A 40 540 531 HOH HOH . J 8 HOH A 41 541 546 HOH HOH . J 8 HOH A 42 542 540 HOH HOH . J 8 HOH A 43 543 555 HOH HOH . J 8 HOH A 44 544 542 HOH HOH . J 8 HOH A 45 545 552 HOH HOH . J 8 HOH A 46 546 538 HOH HOH . J 8 HOH A 47 547 543 HOH HOH . J 8 HOH A 48 548 548 HOH HOH . J 8 HOH A 49 549 553 HOH HOH . J 8 HOH A 50 550 541 HOH HOH . J 8 HOH A 51 551 550 HOH HOH . J 8 HOH A 52 552 551 HOH HOH . J 8 HOH A 53 553 554 HOH HOH . J 8 HOH A 54 554 537 HOH HOH . J 8 HOH A 55 555 558 HOH HOH . J 8 HOH A 56 556 556 HOH HOH . J 8 HOH A 57 557 557 HOH HOH . J 8 HOH A 58 558 559 HOH HOH . J 8 HOH A 59 559 561 HOH HOH . J 8 HOH A 60 560 560 HOH HOH . J 8 HOH A 61 561 562 HOH HOH . J 8 HOH A 62 562 563 HOH HOH . J 8 HOH A 63 563 565 HOH HOH . J 8 HOH A 64 564 564 HOH HOH . J 8 HOH A 65 565 566 HOH HOH . J 8 HOH A 66 566 567 HOH HOH . J 8 HOH A 67 567 568 HOH HOH . K 8 HOH B 1 201 201 HOH HOH . K 8 HOH B 2 202 207 HOH HOH . K 8 HOH B 3 203 203 HOH HOH . K 8 HOH B 4 204 202 HOH HOH . K 8 HOH B 5 205 208 HOH HOH . K 8 HOH B 6 206 204 HOH HOH . K 8 HOH B 7 207 205 HOH HOH . K 8 HOH B 8 208 209 HOH HOH . K 8 HOH B 9 209 214 HOH HOH . K 8 HOH B 10 210 212 HOH HOH . K 8 HOH B 11 211 206 HOH HOH . K 8 HOH B 12 212 211 HOH HOH . K 8 HOH B 13 213 213 HOH HOH . K 8 HOH B 14 214 210 HOH HOH . K 8 HOH B 15 215 216 HOH HOH . K 8 HOH B 16 216 215 HOH HOH . K 8 HOH B 17 217 219 HOH HOH . K 8 HOH B 18 218 217 HOH HOH . K 8 HOH B 19 219 218 HOH HOH . K 8 HOH B 20 220 544 HOH HOH . K 8 HOH B 21 221 222 HOH HOH . K 8 HOH B 22 222 220 HOH HOH . K 8 HOH B 23 223 221 HOH HOH . K 8 HOH B 24 224 223 HOH HOH . K 8 HOH B 25 225 224 HOH HOH . K 8 HOH B 26 226 226 HOH HOH . K 8 HOH B 27 227 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . C 3 -13.491 6.683 -51.899 1 70.2 ? C9 OLC 401 A 1 HETATM 2 C C8 OLC . . . C 3 -14.221 7.55 -52.928 1 74.14 ? C8 OLC 401 A 1 HETATM 3 C C24 OLC . . . C 3 -15.883 8.387 -66.279 1 92.07 ? C24 OLC 401 A 1 HETATM 4 C C7 OLC . . . C 3 -14.401 6.755 -54.222 1 81.59 ? C7 OLC 401 A 1 HETATM 5 C C6 OLC . . . C 3 -14.932 7.673 -55.324 1 82.68 ? C6 OLC 401 A 1 HETATM 6 C C5 OLC . . . C 3 -14.749 6.993 -56.683 1 78.14 ? C5 OLC 401 A 1 HETATM 7 C C4 OLC . . . C 3 -15.506 7.778 -57.755 1 81.17 ? C4 OLC 401 A 1 HETATM 8 C C3 OLC . . . C 3 -15.159 7.219 -59.137 1 83.76 ? C3 OLC 401 A 1 HETATM 9 C C2 OLC . . . C 3 -15.994 7.933 -60.203 1 88.7 ? C2 OLC 401 A 1 HETATM 10 C C21 OLC . . . C 3 -15.865 7.938 -63.817 1 90.97 ? C21 OLC 401 A 1 HETATM 11 C C1 OLC . . . C 3 -15.427 7.622 -61.59 1 90.88 ? C1 OLC 401 A 1 HETATM 12 C C22 OLC . . . C 3 -15.413 8.9 -64.918 1 90.92 ? C22 OLC 401 A 1 HETATM 13 O O19 OLC . . . C 3 -14.769 6.603 -61.792 1 95.15 ? O19 OLC 401 A 1 HETATM 14 O O25 OLC . . . C 3 -15.326 9.205 -67.312 1 92.84 ? O25 OLC 401 A 1 HETATM 15 O O23 OLC . . . C 3 -15.971 10.196 -64.685 1 92.88 ? O23 OLC 401 A 1 HETATM 16 O O20 OLC . . . C 3 -15.687 8.56 -62.54 1 89.24 ? O20 OLC 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #