data_5C1V # _model_server_result.job_id 48cqoAG4w8SjinXcAzzkFA _model_server_result.datetime_utc '2025-03-06 09:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 5C1V # _exptl.entry_id 5C1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5C1V _cell.length_a 185.008 _cell.length_b 185.008 _cell.length_c 106.744 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 89 A ASP 90 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A NE2 HIS 91 A HIS 92 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc3 A OD2 ASP 117 A ASP 118 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 A OD2 ASP 117 A ASP 118 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc5 A OD1 ASN 149 A ASN 150 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 A NE2 HIS 198 A HIS 199 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 A ND1 HIS 280 A HIS 281 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc8 C FE FE . A FE 501 1_555 E O4 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc9 C FE FE . A FE 501 1_555 E P PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc10 D ZN ZN . A ZN 502 1_555 E O4 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc11 B OD2 ASP 89 B ASP 90 1_555 F FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc12 B NE2 HIS 91 B HIS 92 1_555 F FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc13 B OD1 ASN 149 B ASN 150 1_555 G ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc14 B NE2 HIS 198 B HIS 199 1_555 G ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc15 F FE FE . B FE 501 1_555 H O1 PO4 . B PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc16 G ZN ZN . B ZN 502 1_555 H O4 PO4 . B PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 258 n n P O2 PO4 sing 259 n n P O3 PO4 sing 260 n n P O4 PO4 sing 261 n n # _atom_sites.entry_id 5C1V _atom_sites.fract_transf_matrix[1][1] 0.005405 _atom_sites.fract_transf_matrix[1][2] 0.003121 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 501 501 FE FE . D 3 ZN A 1 502 502 ZN ZN . E 4 PO4 A 1 503 503 PO4 PO4 . F 2 FE B 1 501 501 FE FE . G 3 ZN B 1 502 502 ZN ZN . H 4 PO4 B 1 503 503 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 4 -23.905 -61.919 -2.015 1 88.36 ? P PO4 503 A 1 HETATM 2 O O1 PO4 . . . E 4 -24.893 -61.772 -3.148 1 77.27 ? O1 PO4 503 A 1 HETATM 3 O O2 PO4 . . . E 4 -22.944 -60.876 -2.477 1 87.86 ? O2 PO4 503 A 1 HETATM 4 O O3 PO4 . . . E 4 -23.345 -63.334 -1.988 1 92.48 ? O3 PO4 503 A 1 HETATM 5 O O4 PO4 . . . E 4 -24.39 -61.656 -0.612 1 78.98 ? O4 PO4 503 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #