data_5C1Y # _model_server_result.job_id Dt-KWh-EzbgQByaNFKM1JQ _model_server_result.datetime_utc '2025-01-02 15:53:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5C1Y # _exptl.entry_id 5C1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'propan-2-yl N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C1Y _cell.length_a 64.367 _cell.length_b 65.062 _cell.length_c 75.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C27 _struct_conn.ptnr2_label_comp_id GHY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GHY _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.744 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H29 N3 O5' _chem_comp.formula_weight 391.461 _chem_comp.id GHY _chem_comp.mon_nstd_flag . _chem_comp.name 'propan-2-yl N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 O28 GHY sing 83 n n C27 C26 GHY sing 84 n n C29 C26 GHY sing 85 n n C29 C30 GHY sing 86 n n C26 N24 GHY sing 87 n n O1 C34 GHY doub 88 n n C34 C30 GHY sing 89 n n C34 N33 GHY sing 90 n n C30 C31 GHY sing 91 n n C31 C32 GHY sing 92 n n N24 C23 GHY sing 93 n n N33 C32 GHY sing 94 n n O25 C23 GHY doub 95 n n C23 C15 GHY sing 96 n n C15 C16 GHY sing 97 n n C15 N13 GHY sing 98 n n C16 C17 GHY sing 99 n n C17 C22 GHY doub 100 n y C17 C18 GHY sing 101 n y N13 C12 GHY sing 102 n n O14 C12 GHY doub 103 n n C22 C21 GHY sing 104 n y C18 C19 GHY doub 105 n y C12 O11 GHY sing 106 n n C21 C20 GHY doub 107 n y C19 C20 GHY sing 108 n y O11 C10 GHY sing 109 n n C1 C10 GHY sing 110 n n C10 C5 GHY sing 111 n n C15 H1 GHY sing 112 n n C16 H2 GHY sing 113 n n C16 H3 GHY sing 114 n n C22 H4 GHY sing 115 n n C21 H5 GHY sing 116 n n C20 H6 GHY sing 117 n n C19 H7 GHY sing 118 n n C18 H8 GHY sing 119 n n N13 H9 GHY sing 120 n n C10 H10 GHY sing 121 n n C1 H11 GHY sing 122 n n C1 H12 GHY sing 123 n n C1 H13 GHY sing 124 n n C5 H14 GHY sing 125 n n C5 H15 GHY sing 126 n n C5 H16 GHY sing 127 n n N24 H17 GHY sing 128 n n C26 H18 GHY sing 129 n n C27 H19 GHY sing 130 n n C27 H20 GHY sing 131 n n O28 H21 GHY sing 132 n n C29 H22 GHY sing 133 n n C29 H23 GHY sing 134 n n C30 H24 GHY sing 135 n n C31 H25 GHY sing 136 n n C31 H26 GHY sing 137 n n C32 H27 GHY sing 138 n n C32 H28 GHY sing 139 n n N33 H29 GHY sing 140 n n # _atom_sites.entry_id 5C1Y _atom_sites.fract_transf_matrix[1][1] 0.015536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GHY A 1 201 201 GHY GHY . C 3 HOH A 1 301 355 HOH HOH . C 3 HOH A 2 302 333 HOH HOH . C 3 HOH A 3 303 332 HOH HOH . C 3 HOH A 4 304 309 HOH HOH . C 3 HOH A 5 305 352 HOH HOH . C 3 HOH A 6 306 357 HOH HOH . C 3 HOH A 7 307 306 HOH HOH . C 3 HOH A 8 308 346 HOH HOH . C 3 HOH A 9 309 323 HOH HOH . C 3 HOH A 10 310 313 HOH HOH . C 3 HOH A 11 311 324 HOH HOH . C 3 HOH A 12 312 334 HOH HOH . C 3 HOH A 13 313 356 HOH HOH . C 3 HOH A 14 314 335 HOH HOH . C 3 HOH A 15 315 314 HOH HOH . C 3 HOH A 16 316 351 HOH HOH . C 3 HOH A 17 317 328 HOH HOH . C 3 HOH A 18 318 321 HOH HOH . C 3 HOH A 19 319 336 HOH HOH . C 3 HOH A 20 320 319 HOH HOH . C 3 HOH A 21 321 353 HOH HOH . C 3 HOH A 22 322 345 HOH HOH . C 3 HOH A 23 323 317 HOH HOH . C 3 HOH A 24 324 347 HOH HOH . C 3 HOH A 25 325 337 HOH HOH . C 3 HOH A 26 326 320 HOH HOH . C 3 HOH A 27 327 304 HOH HOH . C 3 HOH A 28 328 343 HOH HOH . C 3 HOH A 29 329 325 HOH HOH . C 3 HOH A 30 330 303 HOH HOH . C 3 HOH A 31 331 302 HOH HOH . C 3 HOH A 32 332 315 HOH HOH . C 3 HOH A 33 333 344 HOH HOH . C 3 HOH A 34 334 331 HOH HOH . C 3 HOH A 35 335 348 HOH HOH . C 3 HOH A 36 336 307 HOH HOH . C 3 HOH A 37 337 349 HOH HOH . C 3 HOH A 38 338 354 HOH HOH . C 3 HOH A 39 339 308 HOH HOH . C 3 HOH A 40 340 322 HOH HOH . C 3 HOH A 41 341 330 HOH HOH . C 3 HOH A 42 342 329 HOH HOH . C 3 HOH A 43 343 350 HOH HOH . C 3 HOH A 44 344 311 HOH HOH . C 3 HOH A 45 345 318 HOH HOH . C 3 HOH A 46 346 305 HOH HOH . C 3 HOH A 47 347 326 HOH HOH . C 3 HOH A 48 348 327 HOH HOH . C 3 HOH A 49 349 312 HOH HOH . C 3 HOH A 50 350 338 HOH HOH . C 3 HOH A 51 351 310 HOH HOH . C 3 HOH A 52 352 342 HOH HOH . C 3 HOH A 53 353 340 HOH HOH . C 3 HOH A 54 354 301 HOH HOH . C 3 HOH A 55 355 316 HOH HOH . C 3 HOH A 56 356 341 HOH HOH . C 3 HOH A 57 357 339 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 GHY . . . B 2 6.686 5.965 -2.851 1 55.06 ? O25 GHY 201 A 1 HETATM 2 C C23 GHY . . . B 2 7.086 7.061 -2.531 1 59.64 ? C23 GHY 201 A 1 HETATM 3 C C15 GHY . . . B 2 7.669 7.309 -1.183 1 69.91 ? C15 GHY 201 A 1 HETATM 4 C C16 GHY . . . B 2 8.823 6.303 -1.026 1 75.99 ? C16 GHY 201 A 1 HETATM 5 C C17 GHY . . . B 2 10.09 6.781 -0.314 1 78.94 ? C17 GHY 201 A 1 HETATM 6 C C22 GHY . . . B 2 11.094 5.831 -0.105 1 81.21 ? C22 GHY 201 A 1 HETATM 7 C C21 GHY . . . B 2 12.279 6.175 0.558 1 83.73 ? C21 GHY 201 A 1 HETATM 8 C C20 GHY . . . B 2 12.473 7.483 1.021 1 85.46 ? C20 GHY 201 A 1 HETATM 9 C C19 GHY . . . B 2 11.485 8.444 0.82 1 87.13 ? C19 GHY 201 A 1 HETATM 10 C C18 GHY . . . B 2 10.311 8.096 0.153 1 86.75 ? C18 GHY 201 A 1 HETATM 11 N N13 GHY . . . B 2 6.516 7.201 -0.242 1 77.2 ? N13 GHY 201 A 1 HETATM 12 C C12 GHY . . . B 2 5.859 6.119 0.2 1 85.03 ? C12 GHY 201 A 1 HETATM 13 O O11 GHY . . . B 2 4.724 6.356 1.108 1 88.07 ? O11 GHY 201 A 1 HETATM 14 C C10 GHY . . . B 2 4.681 5.599 2.328 1 86.31 ? C10 GHY 201 A 1 HETATM 15 C C1 GHY . . . B 2 4.354 4.131 2.035 1 80.36 ? C1 GHY 201 A 1 HETATM 16 C C5 GHY . . . B 2 3.652 6.235 3.271 1 83.68 ? C5 GHY 201 A 1 HETATM 17 O O14 GHY . . . B 2 6.146 4.973 -0.122 1 87.01 ? O14 GHY 201 A 1 HETATM 18 N N24 GHY . . . B 2 6.945 8.019 -3.331 1 49.32 ? N24 GHY 201 A 1 HETATM 19 C C26 GHY . . . B 2 6.318 7.716 -4.618 1 37.07 ? C26 GHY 201 A 1 HETATM 20 C C27 GHY . . . B 2 7.36 8.06 -5.731 1 24.43 ? C27 GHY 201 A 1 HETATM 21 O O28 GHY . . . B 2 8.486 7.527 -5.317 1 11.84 ? O28 GHY 201 A 1 HETATM 22 C C29 GHY . . . B 2 5.018 8.574 -4.626 1 41.01 ? C29 GHY 201 A 1 HETATM 23 C C30 GHY . . . B 2 4.009 8.55 -3.448 1 43.86 ? C30 GHY 201 A 1 HETATM 24 C C31 GHY . . . B 2 3.066 7.346 -3.366 1 47.08 ? C31 GHY 201 A 1 HETATM 25 C C32 GHY . . . B 2 1.672 7.85 -2.932 1 49.68 ? C32 GHY 201 A 1 HETATM 26 N N33 GHY . . . B 2 1.88 9.284 -2.987 1 52.21 ? N33 GHY 201 A 1 HETATM 27 C C34 GHY . . . B 2 2.96 9.639 -3.555 1 48.53 ? C34 GHY 201 A 1 HETATM 28 O O1 GHY . . . B 2 3.047 10.791 -4.236 1 42.88 ? O1 GHY 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #