data_5C20 # _model_server_result.job_id TNoUricseoaaHKMT_UEM7Q _model_server_result.datetime_utc '2025-01-02 17:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5C20 # _exptl.entry_id 5C20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methylpropyl N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C20 _cell.length_a 64.119 _cell.length_b 64.564 _cell.length_c 75.334 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C27 _struct_conn.ptnr2_label_comp_id GHZ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GHZ _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.761 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id GHZ _chem_comp.mon_nstd_flag . _chem_comp.name '2-methylpropyl N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C1 GHZ sing 83 n n C1 C2 GHZ sing 84 n n C1 C10 GHZ sing 85 n n C10 O11 GHZ sing 86 n n O11 C12 GHZ sing 87 n n C20 C19 GHZ doub 88 n y C20 C21 GHZ sing 89 n y C19 C18 GHZ sing 90 n y C12 N13 GHZ sing 91 n n C12 O14 GHZ doub 92 n n C21 C22 GHZ doub 93 n y N13 C15 GHZ sing 94 n n C18 C17 GHZ doub 95 n y C22 C17 GHZ sing 96 n y C17 C16 GHZ sing 97 n n C16 C15 GHZ sing 98 n n C15 C23 GHZ sing 99 n n C23 O25 GHZ doub 100 n n C23 N24 GHZ sing 101 n n N24 C26 GHZ sing 102 n n C31 C30 GHZ sing 103 n n C31 C32 GHZ sing 104 n n C30 C34 GHZ sing 105 n n C30 C29 GHZ sing 106 n n C32 N33 GHZ sing 107 n n C34 N33 GHZ sing 108 n n C34 O1 GHZ doub 109 n n C26 C29 GHZ sing 110 n n C26 C27 GHZ sing 111 n n C27 O28 GHZ sing 112 n n C15 H1 GHZ sing 113 n n C16 H2 GHZ sing 114 n n C16 H3 GHZ sing 115 n n C22 H4 GHZ sing 116 n n C21 H5 GHZ sing 117 n n C20 H6 GHZ sing 118 n n C19 H7 GHZ sing 119 n n C18 H8 GHZ sing 120 n n N13 H9 GHZ sing 121 n n C10 H10 GHZ sing 122 n n C10 H11 GHZ sing 123 n n C1 H12 GHZ sing 124 n n N24 H13 GHZ sing 125 n n C26 H14 GHZ sing 126 n n C27 H15 GHZ sing 127 n n C27 H16 GHZ sing 128 n n O28 H17 GHZ sing 129 n n C29 H18 GHZ sing 130 n n C29 H19 GHZ sing 131 n n C30 H20 GHZ sing 132 n n C31 H21 GHZ sing 133 n n C31 H22 GHZ sing 134 n n C32 H23 GHZ sing 135 n n C2 H24 GHZ sing 136 n n C2 H25 GHZ sing 137 n n C2 H26 GHZ sing 138 n n C3 H27 GHZ sing 139 n n C3 H28 GHZ sing 140 n n C3 H29 GHZ sing 141 n n C32 H30 GHZ sing 142 n n N33 H31 GHZ sing 143 n n # _atom_sites.entry_id 5C20 _atom_sites.fract_transf_matrix[1][1] 0.015596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GHZ A 1 201 201 GHZ GHZ . C 3 HOH A 1 301 310 HOH HOH . C 3 HOH A 2 302 305 HOH HOH . C 3 HOH A 3 303 309 HOH HOH . C 3 HOH A 4 304 306 HOH HOH . C 3 HOH A 5 305 307 HOH HOH . C 3 HOH A 6 306 311 HOH HOH . C 3 HOH A 7 307 304 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 301 HOH HOH . C 3 HOH A 10 310 303 HOH HOH . C 3 HOH A 11 311 312 HOH HOH . C 3 HOH A 12 312 313 HOH HOH . C 3 HOH A 13 313 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 GHZ . . . B 2 -6.981 5.641 2.091 1 48.43 ? O25 GHZ 201 A 1 HETATM 2 C C23 GHZ . . . B 2 -7.326 6.808 1.994 1 54.57 ? C23 GHZ 201 A 1 HETATM 3 C C15 GHZ . . . B 2 -8.002 7.125 0.712 1 61.71 ? C15 GHZ 201 A 1 HETATM 4 C C16 GHZ . . . B 2 -9.251 6.233 0.708 1 61.67 ? C16 GHZ 201 A 1 HETATM 5 C C17 GHZ . . . B 2 -10.421 6.878 0.013 1 67.29 ? C17 GHZ 201 A 1 HETATM 6 C C22 GHZ . . . B 2 -10.463 8.259 -0.193 1 67.41 ? C22 GHZ 201 A 1 HETATM 7 C C21 GHZ . . . B 2 -11.561 8.834 -0.843 1 67.47 ? C21 GHZ 201 A 1 HETATM 8 C C20 GHZ . . . B 2 -12.619 8.042 -1.289 1 69.51 ? C20 GHZ 201 A 1 HETATM 9 C C19 GHZ . . . B 2 -12.579 6.662 -1.077 1 72.3 ? C19 GHZ 201 A 1 HETATM 10 C C18 GHZ . . . B 2 -11.483 6.078 -0.426 1 69.68 ? C18 GHZ 201 A 1 HETATM 11 N N13 GHZ . . . B 2 -7.272 6.735 -0.495 1 70.51 ? N13 GHZ 201 A 1 HETATM 12 C C12 GHZ . . . B 2 -6.013 7.074 -0.851 1 78.08 ? C12 GHZ 201 A 1 HETATM 13 O O11 GHZ . . . B 2 -5.524 6.536 -2.14 1 90.78 ? O11 GHZ 201 A 1 HETATM 14 C C10 GHZ . . . B 2 -4.255 6.842 -2.757 1 91.9 ? C10 GHZ 201 A 1 HETATM 15 C C1 GHZ . . . B 2 -4.454 7.758 -3.984 1 91.29 ? C1 GHZ 201 A 1 HETATM 16 O O14 GHZ . . . B 2 -5.267 7.794 -0.175 1 69.66 ? O14 GHZ 201 A 1 HETATM 17 N N24 GHZ . . . B 2 -7.174 7.735 2.874 1 50.99 ? N24 GHZ 201 A 1 HETATM 18 C C26 GHZ . . . B 2 -6.541 7.49 4.185 1 48.95 ? C26 GHZ 201 A 1 HETATM 19 C C27 GHZ . . . B 2 -7.705 7.649 5.187 1 42.04 ? C27 GHZ 201 A 1 HETATM 20 O O28 GHZ . . . B 2 -7.333 7.033 6.414 1 46.46 ? O28 GHZ 201 A 1 HETATM 21 C C29 GHZ . . . B 2 -5.289 8.381 4.377 1 50.01 ? C29 GHZ 201 A 1 HETATM 22 C C30 GHZ . . . B 2 -4.311 8.327 3.177 1 51.95 ? C30 GHZ 201 A 1 HETATM 23 C C31 GHZ . . . B 2 -3.415 7.075 3.174 1 51.88 ? C31 GHZ 201 A 1 HETATM 24 C C32 GHZ . . . B 2 -1.969 7.535 3.226 1 50.14 ? C32 GHZ 201 A 1 HETATM 25 N N33 GHZ . . . B 2 -2.132 8.968 3.28 1 49.71 ? N33 GHZ 201 A 1 HETATM 26 C C34 GHZ . . . B 2 -3.3 9.427 3.279 1 52.21 ? C34 GHZ 201 A 1 HETATM 27 O O1 GHZ . . . B 2 -3.578 10.729 3.353 1 56.27 ? O1 GHZ 201 A 1 HETATM 28 C C2 GHZ . . . B 2 -3.92 9.162 -3.711 1 84.59 ? C2 GHZ 201 A 1 HETATM 29 C C3 GHZ . . . B 2 -3.846 7.215 -5.282 1 88.35 ? C3 GHZ 201 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #