data_5C25 # _model_server_result.job_id a_3GHUgCGcK9-3u27EAV8Q _model_server_result.datetime_utc '2024-11-04 22:56:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5C25 # _exptl.entry_id 5C25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.428 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-({4-[(4-cyanophenyl)amino]-1,3,5-triazin-2-yl}amino)-5,7- dimethyl-2-naphthonitrile' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.66 _cell.angle_gamma 90 _cell.entry_id 5C25 _cell.length_a 162.554 _cell.length_b 72.969 _cell.length_c 109.479 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc2 A OE1 GLN 549 A GLN 547 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C23 H17 N7' _chem_comp.formula_weight 391.428 _chem_comp.id 639 _chem_comp.mon_nstd_flag . _chem_comp.name '6-({4-[(4-cyanophenyl)amino]-1,3,5-triazin-2-yl}amino)-5,7- dimethyl-2-naphthonitrile' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAT CBG 639 doub 1 n y NAT CBE 639 sing 2 n y CAI CAG 639 doub 3 n y CAI CBD 639 sing 4 n y NAV CBE 639 sing 5 n n NAV CBD 639 sing 6 n n CBG NAU 639 sing 7 n y CAG CBA 639 sing 8 n y CBE NAS 639 doub 9 n y CBD CAH 639 doub 10 n y NAU CBF 639 doub 11 n y CBA CAE 639 sing 12 n n CBA CAF 639 doub 13 n y NAS CBF 639 sing 14 n y CAH CAF 639 sing 15 n y CAE NAD 639 trip 16 n n CBF NAW 639 sing 17 n n NAW CBH 639 sing 18 n n CAB CBB 639 sing 19 n n CBH CBB 639 doub 20 n y CBH CBC 639 sing 21 n y CBB CAJ 639 sing 22 n y CAC CBC 639 sing 23 n n CBC CAK 639 doub 24 n y CAJ CAZ 639 doub 25 n y CAK CAZ 639 sing 26 n y CAK CCA 639 sing 27 n y CAZ CAA 639 sing 28 n y CCA CCB 639 doub 29 n y CAA CCC 639 doub 30 n y CCB CCC 639 sing 31 n y CCC CCD 639 sing 32 n n CCD NAB 639 trip 33 n n NAW H1 639 sing 34 n n CAG H2 639 sing 35 n n CAJ H3 639 sing 36 n n NAV H4 639 sing 37 n n CBG H5 639 sing 38 n n CCA H6 639 sing 39 n n CCB H7 639 sing 40 n n CAA H8 639 sing 41 n n CAB H9 639 sing 42 n n CAB H10 639 sing 43 n n CAB H11 639 sing 44 n n CAC H12 639 sing 45 n n CAC H13 639 sing 46 n n CAC H14 639 sing 47 n n CAI H15 639 sing 48 n n CAH H16 639 sing 49 n n CAF H17 639 sing 50 n n # _atom_sites.entry_id 5C25 _atom_sites.fract_transf_matrix[1][1] 0.006152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 639 A 1 601 1 639 639 . D 4 SO4 A 1 602 1 SO4 SO4 . E 4 SO4 A 1 603 2 SO4 SO4 . F 5 MG A 1 604 1 MG MG . G 6 HOH A 1 701 10 HOH HOH . G 6 HOH A 2 702 5 HOH HOH . G 6 HOH A 3 703 8 HOH HOH . G 6 HOH A 4 704 9 HOH HOH . G 6 HOH A 5 705 26 HOH HOH . G 6 HOH A 6 706 20 HOH HOH . G 6 HOH A 7 707 6 HOH HOH . G 6 HOH A 8 708 18 HOH HOH . G 6 HOH A 9 709 34 HOH HOH . G 6 HOH A 10 710 15 HOH HOH . G 6 HOH A 11 711 37 HOH HOH . G 6 HOH A 12 712 38 HOH HOH . G 6 HOH A 13 713 16 HOH HOH . G 6 HOH A 14 714 17 HOH HOH . G 6 HOH A 15 715 27 HOH HOH . H 6 HOH B 1 501 19 HOH HOH . H 6 HOH B 2 502 32 HOH HOH . H 6 HOH B 3 503 35 HOH HOH . H 6 HOH B 4 504 3 HOH HOH . H 6 HOH B 5 505 4 HOH HOH . H 6 HOH B 6 506 31 HOH HOH . H 6 HOH B 7 507 23 HOH HOH . H 6 HOH B 8 508 11 HOH HOH . H 6 HOH B 9 509 29 HOH HOH . H 6 HOH B 10 510 22 HOH HOH . H 6 HOH B 11 511 36 HOH HOH . H 6 HOH B 12 512 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBD 639 . . . C 3 193.064 -30.554 141.722 1 33.52 ? CBD 639 601 A 1 HETATM 2 C CBC 639 . . . C 3 193.158 -28.605 145.952 1 33.69 ? CBC 639 601 A 1 HETATM 3 N NAW 639 . . . C 3 194.134 -26.645 144.636 1 38.7 ? NAW 639 601 A 1 HETATM 4 C CAG 639 . . . C 3 192.189 -32.845 141.553 1 29.51 ? CAG 639 601 A 1 HETATM 5 C CAK 639 . . . C 3 192.043 -29.082 146.676 1 31.43 ? CAK 639 601 A 1 HETATM 6 N NAT 639 . . . C 3 195.23 -27.588 140.895 1 32.2 ? NAT 639 601 A 1 HETATM 7 C CBE 639 . . . C 3 194.367 -28.288 141.695 1 31.92 ? CBE 639 601 A 1 HETATM 8 C CAZ 639 . . . C 3 190.892 -28.271 146.842 1 39.11 ? CAZ 639 601 A 1 HETATM 9 N NAS 639 . . . C 3 194.072 -27.893 142.919 1 32.47 ? NAS 639 601 A 1 HETATM 10 C CBF 639 . . . C 3 194.604 -26.781 143.46 1 36.06 ? CBF 639 601 A 1 HETATM 11 C CAJ 639 . . . C 3 190.86 -26.982 146.281 1 36.65 ? CAJ 639 601 A 1 HETATM 12 N NAV 639 . . . C 3 193.787 -29.452 141.19 1 27.96 ? NAV 639 601 A 1 HETATM 13 N NAU 639 . . . C 3 195.496 -25.984 142.734 1 41.7 ? NAU 639 601 A 1 HETATM 14 C CBB 639 . . . C 3 191.969 -26.495 145.557 1 34.23 ? CBB 639 601 A 1 HETATM 15 N NAD 639 . . . C 3 190.342 -34.872 143.698 1 40.88 ? NAD 639 601 A 1 HETATM 16 C CBG 639 . . . C 3 195.788 -26.434 141.432 1 39.16 ? CBG 639 601 A 1 HETATM 17 C CBH 639 . . . C 3 193.119 -27.302 145.39 1 35.78 ? CBH 639 601 A 1 HETATM 18 N NAB 639 . . . C 3 187.736 -30.951 149.448 1 48.21 ? NAB 639 601 A 1 HETATM 19 C CCA 639 . . . C 3 192.051 -30.373 147.245 1 30.3 ? CCA 639 601 A 1 HETATM 20 C CCB 639 . . . C 3 190.943 -30.846 147.966 1 38.84 ? CCB 639 601 A 1 HETATM 21 C CCC 639 . . . C 3 189.8 -30.051 148.138 1 39.9 ? CCC 639 601 A 1 HETATM 22 C CAA 639 . . . C 3 189.775 -28.759 147.572 1 38.52 ? CAA 639 601 A 1 HETATM 23 C CCD 639 . . . C 3 188.662 -30.562 148.882 1 41.86 ? CCD 639 601 A 1 HETATM 24 C CAB 639 . . . C 3 191.91 -25.1 144.963 1 39.4 ? CAB 639 601 A 1 HETATM 25 C CAC 639 . . . C 3 194.388 -29.5 145.789 1 27.2 ? CAC 639 601 A 1 HETATM 26 C CAI 639 . . . C 3 192.904 -31.778 141.012 1 32.15 ? CAI 639 601 A 1 HETATM 27 C CBA 639 . . . C 3 191.592 -32.779 142.806 1 28.16 ? CBA 639 601 A 1 HETATM 28 C CAH 639 . . . C 3 192.44 -30.499 143.016 1 38.22 ? CAH 639 601 A 1 HETATM 29 C CAF 639 . . . C 3 191.707 -31.583 143.578 1 35.92 ? CAF 639 601 A 1 HETATM 30 C CAE 639 . . . C 3 190.87 -33.914 143.307 1 40.92 ? CAE 639 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 30 #