data_5C26 # _model_server_result.job_id MvtqH2gkan3ABaenWyn8Ug _model_server_result.datetime_utc '2024-12-22 01:14:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 5C26 # _exptl.entry_id 5C26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.407 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{8-[(3,4-dimethoxyphenyl)amino]imidazo[1,2-a]pyrazin-6-yl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C26 _cell.length_a 39.99 _cell.length_b 85.72 _cell.length_c 89.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 182 A ASN 524 1_555 A N PTR 183 A PTR 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PTR 183 A PTR 525 1_555 A N PTR 184 A PTR 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PTR 184 A PTR 526 1_555 A N LYS 185 A LYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 B C VAL 2 B VAL 347 1_555 B N PTR 3 B PTR 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 B C PTR 3 B PTR 348 1_555 B N GLU 4 B GLU 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C21 H19 N5 O3' _chem_comp.formula_weight 389.407 _chem_comp.id 50H _chem_comp.mon_nstd_flag . _chem_comp.name 3-{8-[(3,4-dimethoxyphenyl)amino]imidazo[1,2-a]pyrazin-6-yl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 O24 50H sing 1 n n N7 C12 50H sing 2 n y N7 C3 50H doub 3 n y C12 C14 50H doub 4 n y C22 C20 50H doub 5 n y C22 C17 50H sing 6 n y C20 C18 50H sing 7 n y N8 C17 50H sing 8 n n N8 C1 50H sing 9 n n C17 C15 50H doub 10 n y C18 O24 50H sing 11 n n C18 C16 50H doub 12 n y C3 C1 50H sing 13 n y C3 N4 50H sing 14 n y C14 N4 50H sing 15 n y C1 N2 50H doub 16 n y C15 C16 50H sing 17 n y N4 C6 50H sing 18 n y C16 O23 50H sing 19 n n N2 C5 50H sing 20 n y O23 C28 50H sing 21 n n C6 C5 50H doub 22 n y C5 C10 50H sing 23 n n C10 C13 50H doub 24 n y C10 C25 50H sing 25 n y C13 C11 50H sing 26 n y C25 C27 50H doub 27 n y C11 C26 50H doub 28 n y C11 C9 50H sing 29 n n C27 C26 50H sing 30 n y N21 C9 50H sing 31 n n C9 O19 50H doub 32 n n C6 H1 50H sing 33 n n C13 H2 50H sing 34 n n C20 H3 50H sing 35 n n C26 H4 50H sing 36 n n C27 H5 50H sing 37 n n C25 H6 50H sing 38 n n C22 H7 50H sing 39 n n C15 H8 50H sing 40 n n C12 H9 50H sing 41 n n C14 H10 50H sing 42 n n C29 H11 50H sing 43 n n C29 H12 50H sing 44 n n C29 H13 50H sing 45 n n C28 H14 50H sing 46 n n C28 H15 50H sing 47 n n C28 H16 50H sing 48 n n N21 H17 50H sing 49 n n N21 H18 50H sing 50 n n N8 H19 50H sing 51 n n # _atom_sites.entry_id 5C26 _atom_sites.fract_transf_matrix[1][1] 0.025006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 50H A 1 701 999 50H PFE . D 4 HOH A 1 801 165 HOH HOH . D 4 HOH A 2 802 198 HOH HOH . D 4 HOH A 3 803 128 HOH HOH . D 4 HOH A 4 804 191 HOH HOH . D 4 HOH A 5 805 193 HOH HOH . D 4 HOH A 6 806 69 HOH HOH . D 4 HOH A 7 807 197 HOH HOH . D 4 HOH A 8 808 28 HOH HOH . D 4 HOH A 9 809 118 HOH HOH . D 4 HOH A 10 810 122 HOH HOH . D 4 HOH A 11 811 195 HOH HOH . D 4 HOH A 12 812 52 HOH HOH . D 4 HOH A 13 813 37 HOH HOH . D 4 HOH A 14 814 4 HOH HOH . D 4 HOH A 15 815 126 HOH HOH . D 4 HOH A 16 816 18 HOH HOH . D 4 HOH A 17 817 10 HOH HOH . D 4 HOH A 18 818 124 HOH HOH . D 4 HOH A 19 819 181 HOH HOH . D 4 HOH A 20 820 77 HOH HOH . D 4 HOH A 21 821 169 HOH HOH . D 4 HOH A 22 822 16 HOH HOH . D 4 HOH A 23 823 164 HOH HOH . D 4 HOH A 24 824 199 HOH HOH . D 4 HOH A 25 825 67 HOH HOH . D 4 HOH A 26 826 12 HOH HOH . D 4 HOH A 27 827 56 HOH HOH . D 4 HOH A 28 828 27 HOH HOH . D 4 HOH A 29 829 152 HOH HOH . D 4 HOH A 30 830 65 HOH HOH . D 4 HOH A 31 831 97 HOH HOH . D 4 HOH A 32 832 68 HOH HOH . D 4 HOH A 33 833 119 HOH HOH . D 4 HOH A 34 834 121 HOH HOH . D 4 HOH A 35 835 101 HOH HOH . D 4 HOH A 36 836 72 HOH HOH . D 4 HOH A 37 837 123 HOH HOH . D 4 HOH A 38 838 23 HOH HOH . D 4 HOH A 39 839 114 HOH HOH . D 4 HOH A 40 840 89 HOH HOH . D 4 HOH A 41 841 150 HOH HOH . D 4 HOH A 42 842 6 HOH HOH . D 4 HOH A 43 843 120 HOH HOH . D 4 HOH A 44 844 43 HOH HOH . D 4 HOH A 45 845 24 HOH HOH . D 4 HOH A 46 846 141 HOH HOH . D 4 HOH A 47 847 113 HOH HOH . D 4 HOH A 48 848 20 HOH HOH . D 4 HOH A 49 849 175 HOH HOH . D 4 HOH A 50 850 11 HOH HOH . D 4 HOH A 51 851 58 HOH HOH . D 4 HOH A 52 852 13 HOH HOH . D 4 HOH A 53 853 73 HOH HOH . D 4 HOH A 54 854 44 HOH HOH . D 4 HOH A 55 855 149 HOH HOH . D 4 HOH A 56 856 2 HOH HOH . D 4 HOH A 57 857 147 HOH HOH . D 4 HOH A 58 858 93 HOH HOH . D 4 HOH A 59 859 142 HOH HOH . D 4 HOH A 60 860 7 HOH HOH . D 4 HOH A 61 861 22 HOH HOH . D 4 HOH A 62 862 57 HOH HOH . D 4 HOH A 63 863 196 HOH HOH . D 4 HOH A 64 864 29 HOH HOH . D 4 HOH A 65 865 1 HOH HOH . D 4 HOH A 66 866 74 HOH HOH . D 4 HOH A 67 867 105 HOH HOH . D 4 HOH A 68 868 26 HOH HOH . D 4 HOH A 69 869 49 HOH HOH . D 4 HOH A 70 870 60 HOH HOH . D 4 HOH A 71 871 39 HOH HOH . D 4 HOH A 72 872 90 HOH HOH . D 4 HOH A 73 873 62 HOH HOH . D 4 HOH A 74 874 48 HOH HOH . D 4 HOH A 75 875 31 HOH HOH . D 4 HOH A 76 876 3 HOH HOH . D 4 HOH A 77 877 35 HOH HOH . D 4 HOH A 78 878 153 HOH HOH . D 4 HOH A 79 879 47 HOH HOH . D 4 HOH A 80 880 54 HOH HOH . D 4 HOH A 81 881 136 HOH HOH . D 4 HOH A 82 882 171 HOH HOH . D 4 HOH A 83 883 108 HOH HOH . D 4 HOH A 84 884 95 HOH HOH . D 4 HOH A 85 885 182 HOH HOH . D 4 HOH A 86 886 8 HOH HOH . D 4 HOH A 87 887 177 HOH HOH . D 4 HOH A 88 888 51 HOH HOH . D 4 HOH A 89 889 100 HOH HOH . D 4 HOH A 90 890 59 HOH HOH . D 4 HOH A 91 891 192 HOH HOH . D 4 HOH A 92 892 154 HOH HOH . D 4 HOH A 93 893 50 HOH HOH . D 4 HOH A 94 894 61 HOH HOH . D 4 HOH A 95 895 36 HOH HOH . D 4 HOH A 96 896 117 HOH HOH . D 4 HOH A 97 897 45 HOH HOH . D 4 HOH A 98 898 82 HOH HOH . D 4 HOH A 99 899 21 HOH HOH . D 4 HOH A 100 900 46 HOH HOH . D 4 HOH A 101 901 32 HOH HOH . D 4 HOH A 102 902 33 HOH HOH . D 4 HOH A 103 903 19 HOH HOH . D 4 HOH A 104 904 143 HOH HOH . D 4 HOH A 105 905 30 HOH HOH . D 4 HOH A 106 906 176 HOH HOH . D 4 HOH A 107 907 38 HOH HOH . D 4 HOH A 108 908 9 HOH HOH . D 4 HOH A 109 909 34 HOH HOH . D 4 HOH A 110 910 110 HOH HOH . D 4 HOH A 111 911 25 HOH HOH . D 4 HOH A 112 912 116 HOH HOH . D 4 HOH A 113 913 83 HOH HOH . D 4 HOH A 114 914 17 HOH HOH . D 4 HOH A 115 915 159 HOH HOH . D 4 HOH A 116 916 180 HOH HOH . D 4 HOH A 117 917 63 HOH HOH . D 4 HOH A 118 918 64 HOH HOH . D 4 HOH A 119 919 166 HOH HOH . D 4 HOH A 120 920 155 HOH HOH . D 4 HOH A 121 921 81 HOH HOH . D 4 HOH A 122 922 70 HOH HOH . D 4 HOH A 123 923 102 HOH HOH . D 4 HOH A 124 924 161 HOH HOH . D 4 HOH A 125 925 134 HOH HOH . D 4 HOH A 126 926 88 HOH HOH . D 4 HOH A 127 927 15 HOH HOH . D 4 HOH A 128 928 55 HOH HOH . D 4 HOH A 129 929 53 HOH HOH . D 4 HOH A 130 930 151 HOH HOH . D 4 HOH A 131 931 66 HOH HOH . D 4 HOH A 132 932 179 HOH HOH . D 4 HOH A 133 933 158 HOH HOH . D 4 HOH A 134 934 107 HOH HOH . D 4 HOH A 135 935 163 HOH HOH . D 4 HOH A 136 936 109 HOH HOH . D 4 HOH A 137 937 42 HOH HOH . D 4 HOH A 138 938 127 HOH HOH . D 4 HOH A 139 939 146 HOH HOH . D 4 HOH A 140 940 112 HOH HOH . D 4 HOH A 141 941 96 HOH HOH . D 4 HOH A 142 942 201 HOH HOH . D 4 HOH A 143 943 106 HOH HOH . D 4 HOH A 144 944 14 HOH HOH . D 4 HOH A 145 945 85 HOH HOH . D 4 HOH A 146 946 125 HOH HOH . D 4 HOH A 147 947 167 HOH HOH . D 4 HOH A 148 948 129 HOH HOH . D 4 HOH A 149 949 71 HOH HOH . D 4 HOH A 150 950 135 HOH HOH . D 4 HOH A 151 951 148 HOH HOH . D 4 HOH A 152 952 115 HOH HOH . D 4 HOH A 153 953 131 HOH HOH . D 4 HOH A 154 954 87 HOH HOH . D 4 HOH A 155 955 157 HOH HOH . D 4 HOH A 156 956 75 HOH HOH . D 4 HOH A 157 957 139 HOH HOH . D 4 HOH A 158 958 186 HOH HOH . D 4 HOH A 159 959 183 HOH HOH . D 4 HOH A 160 960 76 HOH HOH . D 4 HOH A 161 961 99 HOH HOH . D 4 HOH A 162 962 130 HOH HOH . D 4 HOH A 163 963 79 HOH HOH . D 4 HOH A 164 964 168 HOH HOH . D 4 HOH A 165 965 86 HOH HOH . D 4 HOH A 166 966 138 HOH HOH . D 4 HOH A 167 967 92 HOH HOH . D 4 HOH A 168 968 133 HOH HOH . D 4 HOH A 169 969 140 HOH HOH . D 4 HOH A 170 970 80 HOH HOH . D 4 HOH A 171 971 173 HOH HOH . D 4 HOH A 172 972 144 HOH HOH . D 4 HOH A 173 973 104 HOH HOH . D 4 HOH A 174 974 172 HOH HOH . D 4 HOH A 175 975 184 HOH HOH . E 4 HOH B 1 401 5 HOH HOH . E 4 HOH B 2 402 200 HOH HOH . E 4 HOH B 3 403 170 HOH HOH . E 4 HOH B 4 404 98 HOH HOH . E 4 HOH B 5 405 84 HOH HOH . E 4 HOH B 6 406 194 HOH HOH . E 4 HOH B 7 407 178 HOH HOH . E 4 HOH B 8 408 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 50H . . . C 3 -1.876 0.266 -13.748 1 27.57 ? N2 50H 701 A 1 HETATM 2 C C6 50H . . . C 3 -4.007 1.343 -13.492 1 24.75 ? C6 50H 701 A 1 HETATM 3 C C9 50H . . . C 3 -2.926 5.104 -10.038 1 49.6 ? C9 50H 701 A 1 HETATM 4 C C13 50H . . . C 3 -2.838 3.144 -11.577 1 37.95 ? C13 50H 701 A 1 HETATM 5 C C20 50H . . . C 3 1.83 -2.883 -15.995 1 30.19 ? C20 50H 701 A 1 HETATM 6 C C18 50H . . . C 3 2.65 -2.088 -15.211 1 33.65 ? C18 50H 701 A 1 HETATM 7 C C16 50H . . . C 3 2.108 -1.052 -14.468 1 33.52 ? C16 50H 701 A 1 HETATM 8 C C26 50H . . . C 3 -1.006 3.597 -10.067 1 38.4 ? C26 50H 701 A 1 HETATM 9 C C27 50H . . . C 3 -0.345 2.49 -10.55 1 38.13 ? C27 50H 701 A 1 HETATM 10 C C25 50H . . . C 3 -0.935 1.72 -11.536 1 35.98 ? C25 50H 701 A 1 HETATM 11 C C22 50H . . . C 3 0.472 -2.622 -16.043 1 30.51 ? C22 50H 701 A 1 HETATM 12 C C15 50H . . . C 3 0.744 -0.804 -14.526 1 33.15 ? C15 50H 701 A 1 HETATM 13 C C12 50H . . . C 3 -5.523 -0.443 -16.105 1 22.53 ? C12 50H 701 A 1 HETATM 14 C C14 50H . . . C 3 -5.685 0.497 -15.112 1 23.04 ? C14 50H 701 A 1 HETATM 15 C C10 50H . . . C 3 -2.172 2.029 -12.065 1 33.15 ? C10 50H 701 A 1 HETATM 16 C C11 50H . . . C 3 -2.25 3.909 -10.577 1 42.87 ? C11 50H 701 A 1 HETATM 17 C C17 50H . . . C 3 -0.091 -1.588 -15.31 1 31.08 ? C17 50H 701 A 1 HETATM 18 C C3 50H . . . C 3 -3.633 -0.311 -15.145 1 23.45 ? C3 50H 701 A 1 HETATM 19 C C5 50H . . . C 3 -2.727 1.175 -13.131 1 28.74 ? C5 50H 701 A 1 HETATM 20 C C1 50H . . . C 3 -2.275 -0.471 -14.751 1 25.93 ? C1 50H 701 A 1 HETATM 21 C C29 50H . . . C 3 4.603 -2.832 -16.293 1 37.35 ? C29 50H 701 A 1 HETATM 22 C C28 50H . . . C 3 2.305 0.584 -12.809 1 33.91 ? C28 50H 701 A 1 HETATM 23 N N7 50H . . . C 3 -4.24 -0.942 -16.125 1 24.79 ? N7 50H 701 A 1 HETATM 24 N N4 50H . . . C 3 -4.464 0.561 -14.511 1 25.06 ? N4 50H 701 A 1 HETATM 25 N N21 50H . . . C 3 -4.297 5.098 -10.137 1 52.95 ? N21 50H 701 A 1 HETATM 26 N N8 50H . . . C 3 -1.488 -1.399 -15.424 1 27.79 ? N8 50H 701 A 1 HETATM 27 O O19 50H . . . C 3 -2.263 6.007 -9.545 1 52.62 ? O19 50H 701 A 1 HETATM 28 O O24 50H . . . C 3 4.031 -2.304 -15.095 1 38.44 ? O24 50H 701 A 1 HETATM 29 O O23 50H . . . C 3 2.997 -0.289 -13.7 1 34.69 ? O23 50H 701 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #