data_5C2E # _model_server_result.job_id nZkg6iDEygvBkE84UJPuQw _model_server_result.datetime_utc '2024-11-22 09:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 5C2E # _exptl.entry_id 5C2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.371 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(1-hydroxy-2-methylpropan-2-yl)-5-phenyl-3,5-dihydro-1H-imidazo[4,5-c][1,8]naphthyridine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C2E _cell.length_a 50.5 _cell.length_b 81.35 _cell.length_c 158.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 519 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 A NE2 HIS 136 A HIS 553 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 A OD2 ASP 137 A ASP 554 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 A OD1 ASP 137 A ASP 554 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 A OD1 ASP 247 A ASP 664 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 D MG MG . A MG 802 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc9 D MG MG . A MG 802 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc10 D MG MG . A MG 802 1_555 I O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 D MG MG . A MG 802 1_555 I O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc12 D MG MG . A MG 802 1_555 I O HOH . A HOH 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc13 B NE2 HIS 102 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc14 B NE2 HIS 136 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B OD2 ASP 137 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc16 B OD1 ASP 137 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc17 B OD1 ASP 247 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc18 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc21 G MG MG . B MG 802 1_555 J O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc22 G MG MG . B MG 802 1_555 J O HOH . B HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc23 G MG MG . B MG 802 1_555 J O HOH . B HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'C19 H18 N4 O3' _chem_comp.formula_weight 350.371 _chem_comp.id 4PX _chem_comp.mon_nstd_flag . _chem_comp.name 3-(1-hydroxy-2-methylpropan-2-yl)-5-phenyl-3,5-dihydro-1H-imidazo[4,5-c][1,8]naphthyridine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 4PX doub 1 n y C C4 4PX sing 2 n y C1 N 4PX sing 3 n y C4 C3 4PX doub 4 n y N C2 4PX doub 5 n y C3 C2 4PX sing 6 n y C3 C8 4PX sing 7 n n C2 N5 4PX sing 8 n n N17 C8 4PX sing 9 n n N17 C16 4PX sing 10 n n C8 C7 4PX doub 11 n n N5 C9 4PX sing 12 n n N5 C6 4PX sing 13 n n C10 C9 4PX doub 14 n y C10 C11 4PX sing 15 n y C9 C14 4PX sing 16 n y C16 O18 4PX doub 17 n n C16 N15 4PX sing 18 n n C11 C12 4PX doub 19 n y C7 C6 4PX sing 20 n n C7 N15 4PX sing 21 n n C14 C13 4PX doub 22 n y C6 O 4PX doub 23 n n C12 C13 4PX sing 24 n y N15 C19 4PX sing 25 n n C19 C20 4PX sing 26 n n C19 C23 4PX sing 27 n n C19 C22 4PX sing 28 n n O21 C20 4PX sing 29 n n C H1 4PX sing 30 n n C1 H2 4PX sing 31 n n C4 H3 4PX sing 32 n n C10 H5 4PX sing 33 n n C11 H6 4PX sing 34 n n C12 H7 4PX sing 35 n n C13 H8 4PX sing 36 n n C14 H9 4PX sing 37 n n C20 H10 4PX sing 38 n n C20 H11 4PX sing 39 n n O21 H12 4PX sing 40 n n C22 H13 4PX sing 41 n n C22 H14 4PX sing 42 n n C22 H15 4PX sing 43 n n C23 H16 4PX sing 44 n n C23 H17 4PX sing 45 n n C23 H18 4PX sing 46 n n N17 H4 4PX sing 47 n n # _atom_sites.entry_id 5C2E _atom_sites.fract_transf_matrix[1][1] 0.019802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 1 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 4PX A 1 803 1 4PX MMK . F 2 ZN B 1 801 3 ZN ZN . G 3 MG B 1 802 4 MG MG . H 5 4Y1 B 1 803 1 4Y1 MRK . I 6 HOH A 1 901 12 HOH HOH . I 6 HOH A 2 902 32 HOH HOH . I 6 HOH A 3 903 83 HOH HOH . I 6 HOH A 4 904 96 HOH HOH . I 6 HOH A 5 905 36 HOH HOH . I 6 HOH A 6 906 104 HOH HOH . I 6 HOH A 7 907 114 HOH HOH . I 6 HOH A 8 908 84 HOH HOH . I 6 HOH A 9 909 19 HOH HOH . I 6 HOH A 10 910 112 HOH HOH . I 6 HOH A 11 911 3 HOH HOH . I 6 HOH A 12 912 47 HOH HOH . I 6 HOH A 13 913 49 HOH HOH . I 6 HOH A 14 914 41 HOH HOH . I 6 HOH A 15 915 24 HOH HOH . I 6 HOH A 16 916 71 HOH HOH . I 6 HOH A 17 917 75 HOH HOH . I 6 HOH A 18 918 15 HOH HOH . I 6 HOH A 19 919 14 HOH HOH . I 6 HOH A 20 920 87 HOH HOH . I 6 HOH A 21 921 92 HOH HOH . I 6 HOH A 22 922 27 HOH HOH . I 6 HOH A 23 923 39 HOH HOH . I 6 HOH A 24 924 30 HOH HOH . I 6 HOH A 25 925 106 HOH HOH . I 6 HOH A 26 926 23 HOH HOH . I 6 HOH A 27 927 22 HOH HOH . I 6 HOH A 28 928 45 HOH HOH . I 6 HOH A 29 929 70 HOH HOH . I 6 HOH A 30 930 64 HOH HOH . I 6 HOH A 31 931 18 HOH HOH . I 6 HOH A 32 932 94 HOH HOH . I 6 HOH A 33 933 53 HOH HOH . I 6 HOH A 34 934 57 HOH HOH . I 6 HOH A 35 935 20 HOH HOH . I 6 HOH A 36 936 116 HOH HOH . I 6 HOH A 37 937 11 HOH HOH . I 6 HOH A 38 938 7 HOH HOH . I 6 HOH A 39 939 89 HOH HOH . I 6 HOH A 40 940 37 HOH HOH . I 6 HOH A 41 941 1 HOH HOH . I 6 HOH A 42 942 88 HOH HOH . I 6 HOH A 43 943 108 HOH HOH . I 6 HOH A 44 944 13 HOH HOH . I 6 HOH A 45 945 17 HOH HOH . I 6 HOH A 46 946 72 HOH HOH . I 6 HOH A 47 947 65 HOH HOH . I 6 HOH A 48 948 46 HOH HOH . I 6 HOH A 49 949 42 HOH HOH . I 6 HOH A 50 950 91 HOH HOH . I 6 HOH A 51 951 103 HOH HOH . I 6 HOH A 52 952 31 HOH HOH . I 6 HOH A 53 953 9 HOH HOH . I 6 HOH A 54 954 4 HOH HOH . I 6 HOH A 55 955 105 HOH HOH . I 6 HOH A 56 956 102 HOH HOH . I 6 HOH A 57 957 78 HOH HOH . I 6 HOH A 58 958 56 HOH HOH . I 6 HOH A 59 959 26 HOH HOH . I 6 HOH A 60 960 62 HOH HOH . I 6 HOH A 61 961 117 HOH HOH . I 6 HOH A 62 962 55 HOH HOH . I 6 HOH A 63 963 40 HOH HOH . J 6 HOH B 1 901 113 HOH HOH . J 6 HOH B 2 902 99 HOH HOH . J 6 HOH B 3 903 93 HOH HOH . J 6 HOH B 4 904 69 HOH HOH . J 6 HOH B 5 905 86 HOH HOH . J 6 HOH B 6 906 85 HOH HOH . J 6 HOH B 7 907 25 HOH HOH . J 6 HOH B 8 908 6 HOH HOH . J 6 HOH B 9 909 59 HOH HOH . J 6 HOH B 10 910 54 HOH HOH . J 6 HOH B 11 911 115 HOH HOH . J 6 HOH B 12 912 8 HOH HOH . J 6 HOH B 13 913 34 HOH HOH . J 6 HOH B 14 914 80 HOH HOH . J 6 HOH B 15 915 74 HOH HOH . J 6 HOH B 16 916 76 HOH HOH . J 6 HOH B 17 917 21 HOH HOH . J 6 HOH B 18 918 90 HOH HOH . J 6 HOH B 19 919 16 HOH HOH . J 6 HOH B 20 920 67 HOH HOH . J 6 HOH B 21 921 33 HOH HOH . J 6 HOH B 22 922 109 HOH HOH . J 6 HOH B 23 923 95 HOH HOH . J 6 HOH B 24 924 38 HOH HOH . J 6 HOH B 25 925 2 HOH HOH . J 6 HOH B 26 926 100 HOH HOH . J 6 HOH B 27 927 111 HOH HOH . J 6 HOH B 28 928 97 HOH HOH . J 6 HOH B 29 929 82 HOH HOH . J 6 HOH B 30 930 77 HOH HOH . J 6 HOH B 31 931 60 HOH HOH . J 6 HOH B 32 932 5 HOH HOH . J 6 HOH B 33 933 48 HOH HOH . J 6 HOH B 34 934 29 HOH HOH . J 6 HOH B 35 935 79 HOH HOH . J 6 HOH B 36 936 73 HOH HOH . J 6 HOH B 37 937 61 HOH HOH . J 6 HOH B 38 938 81 HOH HOH . J 6 HOH B 39 939 98 HOH HOH . J 6 HOH B 40 940 44 HOH HOH . J 6 HOH B 41 941 101 HOH HOH . J 6 HOH B 42 942 51 HOH HOH . J 6 HOH B 43 943 43 HOH HOH . J 6 HOH B 44 944 10 HOH HOH . J 6 HOH B 45 945 107 HOH HOH . J 6 HOH B 46 946 35 HOH HOH . J 6 HOH B 47 947 52 HOH HOH . J 6 HOH B 48 948 28 HOH HOH . J 6 HOH B 49 949 58 HOH HOH . J 6 HOH B 50 950 50 HOH HOH . J 6 HOH B 51 951 63 HOH HOH . J 6 HOH B 52 952 110 HOH HOH . J 6 HOH B 53 953 66 HOH HOH . J 6 HOH B 54 954 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 4PX . . . E 4 5.674 9.765 42.044 1 47.77 ? N 4PX 803 A 1 HETATM 2 C C 4PX . . . E 4 4.912 11.284 40.34 1 48.23 ? C 4PX 803 A 1 HETATM 3 O O 4PX . . . E 4 5.366 11.023 46.555 1 47.75 ? O 4PX 803 A 1 HETATM 4 C C1 4PX . . . E 4 5.461 10.092 40.764 1 48.11 ? C1 4PX 803 A 1 HETATM 5 C C2 4PX . . . E 4 5.326 10.677 42.966 1 47.7 ? C2 4PX 803 A 1 HETATM 6 C C3 4PX . . . E 4 4.77 11.893 42.623 1 47.77 ? C3 4PX 803 A 1 HETATM 7 C C4 4PX . . . E 4 4.553 12.205 41.297 1 47.43 ? C4 4PX 803 A 1 HETATM 8 N N5 4PX . . . E 4 5.521 10.418 44.35 1 46.59 ? N5 4PX 803 A 1 HETATM 9 C C6 4PX . . . E 4 5.181 11.287 45.379 1 47.4 ? C6 4PX 803 A 1 HETATM 10 C C7 4PX . . . E 4 4.581 12.58 44.964 1 48.29 ? C7 4PX 803 A 1 HETATM 11 C C8 4PX . . . E 4 4.415 12.816 43.672 1 47.85 ? C8 4PX 803 A 1 HETATM 12 C C9 4PX . . . E 4 6.261 9.273 44.686 1 45.03 ? C9 4PX 803 A 1 HETATM 13 C C10 4PX . . . E 4 7.635 9.264 44.533 1 44.79 ? C10 4PX 803 A 1 HETATM 14 C C11 4PX . . . E 4 8.34 8.131 44.883 1 44.65 ? C11 4PX 803 A 1 HETATM 15 C C12 4PX . . . E 4 7.679 7.025 45.385 1 43.78 ? C12 4PX 803 A 1 HETATM 16 C C13 4PX . . . E 4 6.31 7.036 45.539 1 43.44 ? C13 4PX 803 A 1 HETATM 17 C C14 4PX . . . E 4 5.6 8.167 45.188 1 44.68 ? C14 4PX 803 A 1 HETATM 18 N N15 4PX . . . E 4 4.131 13.674 45.683 1 49.11 ? N15 4PX 803 A 1 HETATM 19 C C16 4PX . . . E 4 3.671 14.595 44.733 1 49.07 ? C16 4PX 803 A 1 HETATM 20 N N17 4PX . . . E 4 3.862 14.031 43.498 1 47.83 ? N17 4PX 803 A 1 HETATM 21 O O18 4PX . . . E 4 3.189 15.707 44.892 1 50.71 ? O18 4PX 803 A 1 HETATM 22 C C19 4PX . . . E 4 4.106 13.868 47.147 1 50.02 ? C19 4PX 803 A 1 HETATM 23 C C20 4PX . . . E 4 3.44 15.158 47.58 1 52.31 ? C20 4PX 803 A 1 HETATM 24 O O21 4PX . . . E 4 4.253 16.298 47.322 1 54.64 ? O21 4PX 803 A 1 HETATM 25 C C22 4PX . . . E 4 3.272 12.81 47.835 1 48.62 ? C22 4PX 803 A 1 HETATM 26 C C23 4PX . . . E 4 5.485 13.87 47.774 1 50.12 ? C23 4PX 803 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #