data_5C2E # _model_server_result.job_id UlZ-A_sbXhbPKYwNmlNAZg _model_server_result.datetime_utc '2024-11-22 09:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":803}' # _entry.id 5C2E # _exptl.entry_id 5C2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.902 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-chloro-N-[(2,4-dimethyl-1,3-thiazol-5-yl)methyl]-5-methyl-2-[2-(pyridin-2-yl)ethoxy]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C2E _cell.length_a 50.5 _cell.length_b 81.35 _cell.length_c 158.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 519 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 A NE2 HIS 136 A HIS 553 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 A OD2 ASP 137 A ASP 554 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 A OD1 ASP 137 A ASP 554 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 A OD1 ASP 247 A ASP 664 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc7 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 D MG MG . A MG 802 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc9 D MG MG . A MG 802 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc10 D MG MG . A MG 802 1_555 I O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 D MG MG . A MG 802 1_555 I O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc12 D MG MG . A MG 802 1_555 I O HOH . A HOH 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc13 B NE2 HIS 102 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc14 B NE2 HIS 136 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B OD2 ASP 137 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc16 B OD1 ASP 137 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc17 B OD1 ASP 247 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc18 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc21 G MG MG . B MG 802 1_555 J O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc22 G MG MG . B MG 802 1_555 J O HOH . B HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc23 G MG MG . B MG 802 1_555 J O HOH . B HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'C18 H20 Cl N5 O S' _chem_comp.formula_weight 389.902 _chem_comp.id 4Y1 _chem_comp.mon_nstd_flag . _chem_comp.name 6-chloro-N-[(2,4-dimethyl-1,3-thiazol-5-yl)methyl]-5-methyl-2-[2-(pyridin-2-yl)ethoxy]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 4Y1 sing 48 n n CL C 4Y1 sing 49 n n C4 C 4Y1 doub 50 n y C4 C3 4Y1 sing 51 n y C N 4Y1 sing 52 n y N6 C3 4Y1 sing 53 n n N6 C7 4Y1 sing 54 n n C3 N2 4Y1 doub 55 n y N C1 4Y1 doub 56 n y S C8 4Y1 sing 57 n y S C9 4Y1 sing 58 n y C7 C8 4Y1 sing 59 n n N2 C1 4Y1 sing 60 n y C1 O 4Y1 sing 61 n n C8 C11 4Y1 doub 62 n y C12 C9 4Y1 sing 63 n n C9 N10 4Y1 doub 64 n y O C14 4Y1 sing 65 n n C14 C15 4Y1 sing 66 n n C11 N10 4Y1 sing 67 n y C11 C13 4Y1 sing 68 n n C15 C16 4Y1 sing 69 n n C16 N17 4Y1 doub 70 n y C16 C21 4Y1 sing 71 n y N17 C18 4Y1 sing 72 n y C21 C20 4Y1 doub 73 n y C18 C19 4Y1 doub 74 n y C20 C19 4Y1 sing 75 n y C5 H1 4Y1 sing 76 n n C5 H2 4Y1 sing 77 n n C5 H3 4Y1 sing 78 n n N6 H4 4Y1 sing 79 n n C7 H5 4Y1 sing 80 n n C7 H6 4Y1 sing 81 n n C12 H7 4Y1 sing 82 n n C12 H8 4Y1 sing 83 n n C12 H9 4Y1 sing 84 n n C13 H10 4Y1 sing 85 n n C13 H11 4Y1 sing 86 n n C13 H12 4Y1 sing 87 n n C15 H13 4Y1 sing 88 n n C15 H14 4Y1 sing 89 n n C18 H15 4Y1 sing 90 n n C20 H16 4Y1 sing 91 n n C21 H17 4Y1 sing 92 n n C14 H18 4Y1 sing 93 n n C14 H19 4Y1 sing 94 n n C19 H20 4Y1 sing 95 n n # _atom_sites.entry_id 5C2E _atom_sites.fract_transf_matrix[1][1] 0.019802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 1 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 4PX A 1 803 1 4PX MMK . F 2 ZN B 1 801 3 ZN ZN . G 3 MG B 1 802 4 MG MG . H 5 4Y1 B 1 803 1 4Y1 MRK . I 6 HOH A 1 901 12 HOH HOH . I 6 HOH A 2 902 32 HOH HOH . I 6 HOH A 3 903 83 HOH HOH . I 6 HOH A 4 904 96 HOH HOH . I 6 HOH A 5 905 36 HOH HOH . I 6 HOH A 6 906 104 HOH HOH . I 6 HOH A 7 907 114 HOH HOH . I 6 HOH A 8 908 84 HOH HOH . I 6 HOH A 9 909 19 HOH HOH . I 6 HOH A 10 910 112 HOH HOH . I 6 HOH A 11 911 3 HOH HOH . I 6 HOH A 12 912 47 HOH HOH . I 6 HOH A 13 913 49 HOH HOH . I 6 HOH A 14 914 41 HOH HOH . I 6 HOH A 15 915 24 HOH HOH . I 6 HOH A 16 916 71 HOH HOH . I 6 HOH A 17 917 75 HOH HOH . I 6 HOH A 18 918 15 HOH HOH . I 6 HOH A 19 919 14 HOH HOH . I 6 HOH A 20 920 87 HOH HOH . I 6 HOH A 21 921 92 HOH HOH . I 6 HOH A 22 922 27 HOH HOH . I 6 HOH A 23 923 39 HOH HOH . I 6 HOH A 24 924 30 HOH HOH . I 6 HOH A 25 925 106 HOH HOH . I 6 HOH A 26 926 23 HOH HOH . I 6 HOH A 27 927 22 HOH HOH . I 6 HOH A 28 928 45 HOH HOH . I 6 HOH A 29 929 70 HOH HOH . I 6 HOH A 30 930 64 HOH HOH . I 6 HOH A 31 931 18 HOH HOH . I 6 HOH A 32 932 94 HOH HOH . I 6 HOH A 33 933 53 HOH HOH . I 6 HOH A 34 934 57 HOH HOH . I 6 HOH A 35 935 20 HOH HOH . I 6 HOH A 36 936 116 HOH HOH . I 6 HOH A 37 937 11 HOH HOH . I 6 HOH A 38 938 7 HOH HOH . I 6 HOH A 39 939 89 HOH HOH . I 6 HOH A 40 940 37 HOH HOH . I 6 HOH A 41 941 1 HOH HOH . I 6 HOH A 42 942 88 HOH HOH . I 6 HOH A 43 943 108 HOH HOH . I 6 HOH A 44 944 13 HOH HOH . I 6 HOH A 45 945 17 HOH HOH . I 6 HOH A 46 946 72 HOH HOH . I 6 HOH A 47 947 65 HOH HOH . I 6 HOH A 48 948 46 HOH HOH . I 6 HOH A 49 949 42 HOH HOH . I 6 HOH A 50 950 91 HOH HOH . I 6 HOH A 51 951 103 HOH HOH . I 6 HOH A 52 952 31 HOH HOH . I 6 HOH A 53 953 9 HOH HOH . I 6 HOH A 54 954 4 HOH HOH . I 6 HOH A 55 955 105 HOH HOH . I 6 HOH A 56 956 102 HOH HOH . I 6 HOH A 57 957 78 HOH HOH . I 6 HOH A 58 958 56 HOH HOH . I 6 HOH A 59 959 26 HOH HOH . I 6 HOH A 60 960 62 HOH HOH . I 6 HOH A 61 961 117 HOH HOH . I 6 HOH A 62 962 55 HOH HOH . I 6 HOH A 63 963 40 HOH HOH . J 6 HOH B 1 901 113 HOH HOH . J 6 HOH B 2 902 99 HOH HOH . J 6 HOH B 3 903 93 HOH HOH . J 6 HOH B 4 904 69 HOH HOH . J 6 HOH B 5 905 86 HOH HOH . J 6 HOH B 6 906 85 HOH HOH . J 6 HOH B 7 907 25 HOH HOH . J 6 HOH B 8 908 6 HOH HOH . J 6 HOH B 9 909 59 HOH HOH . J 6 HOH B 10 910 54 HOH HOH . J 6 HOH B 11 911 115 HOH HOH . J 6 HOH B 12 912 8 HOH HOH . J 6 HOH B 13 913 34 HOH HOH . J 6 HOH B 14 914 80 HOH HOH . J 6 HOH B 15 915 74 HOH HOH . J 6 HOH B 16 916 76 HOH HOH . J 6 HOH B 17 917 21 HOH HOH . J 6 HOH B 18 918 90 HOH HOH . J 6 HOH B 19 919 16 HOH HOH . J 6 HOH B 20 920 67 HOH HOH . J 6 HOH B 21 921 33 HOH HOH . J 6 HOH B 22 922 109 HOH HOH . J 6 HOH B 23 923 95 HOH HOH . J 6 HOH B 24 924 38 HOH HOH . J 6 HOH B 25 925 2 HOH HOH . J 6 HOH B 26 926 100 HOH HOH . J 6 HOH B 27 927 111 HOH HOH . J 6 HOH B 28 928 97 HOH HOH . J 6 HOH B 29 929 82 HOH HOH . J 6 HOH B 30 930 77 HOH HOH . J 6 HOH B 31 931 60 HOH HOH . J 6 HOH B 32 932 5 HOH HOH . J 6 HOH B 33 933 48 HOH HOH . J 6 HOH B 34 934 29 HOH HOH . J 6 HOH B 35 935 79 HOH HOH . J 6 HOH B 36 936 73 HOH HOH . J 6 HOH B 37 937 61 HOH HOH . J 6 HOH B 38 938 81 HOH HOH . J 6 HOH B 39 939 98 HOH HOH . J 6 HOH B 40 940 44 HOH HOH . J 6 HOH B 41 941 101 HOH HOH . J 6 HOH B 42 942 51 HOH HOH . J 6 HOH B 43 943 43 HOH HOH . J 6 HOH B 44 944 10 HOH HOH . J 6 HOH B 45 945 107 HOH HOH . J 6 HOH B 46 946 35 HOH HOH . J 6 HOH B 47 947 52 HOH HOH . J 6 HOH B 48 948 28 HOH HOH . J 6 HOH B 49 949 58 HOH HOH . J 6 HOH B 50 950 50 HOH HOH . J 6 HOH B 51 951 63 HOH HOH . J 6 HOH B 52 952 110 HOH HOH . J 6 HOH B 53 953 66 HOH HOH . J 6 HOH B 54 954 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 4Y1 . . . H 5 -9.061 -2.436 18.33 1 37.42 ? C3 4Y1 803 B 1 HETATM 2 C C5 4Y1 . . . H 5 -9.131 -2.796 15.836 1 39.83 ? C5 4Y1 803 B 1 HETATM 3 N N6 4Y1 . . . H 5 -10.234 -1.661 18.196 1 34.75 ? N6 4Y1 803 B 1 HETATM 4 C C7 4Y1 . . . H 5 -10.627 -0.947 19.402 1 33.31 ? C7 4Y1 803 B 1 HETATM 5 C C9 4Y1 . . . H 5 -8.228 2.03 20.115 1 34.02 ? C9 4Y1 803 B 1 HETATM 6 C C11 4Y1 . . . H 5 -10.057 1.087 20.903 1 33.09 ? C11 4Y1 803 B 1 HETATM 7 C C12 4Y1 . . . H 5 -7.095 2.962 19.972 1 33.69 ? C12 4Y1 803 B 1 HETATM 8 C C13 4Y1 . . . H 5 -11.153 1.022 21.881 1 34.23 ? C13 4Y1 803 B 1 HETATM 9 C C15 4Y1 . . . H 5 -5.287 -4.456 22.324 1 43.89 ? C15 4Y1 803 B 1 HETATM 10 N N17 4Y1 . . . H 5 -5.96 -6.427 23.532 1 47.85 ? N17 4Y1 803 B 1 HETATM 11 C C18 4Y1 . . . H 5 -6.832 -7.06 24.33 1 47.91 ? C18 4Y1 803 B 1 HETATM 12 C C20 4Y1 . . . H 5 -8.267 -5.189 24.495 1 47.03 ? C20 4Y1 803 B 1 HETATM 13 C C21 4Y1 . . . H 5 -7.39 -4.508 23.677 1 46.26 ? C21 4Y1 803 B 1 HETATM 14 C C 4Y1 . . . H 5 -7.358 -3.722 17.35 1 43.54 ? C 4Y1 803 B 1 HETATM 15 N N 4Y1 . . . H 5 -6.749 -3.929 18.521 1 41.24 ? N 4Y1 803 B 1 HETATM 16 O O 4Y1 . . . H 5 -6.838 -3.476 20.838 1 41.17 ? O 4Y1 803 B 1 HETATM 17 S S 4Y1 . . . H 5 -8.43 0.745 18.998 1 33.42 ? S 4Y1 803 B 1 HETATM 18 CL CL 4Y1 . . . H 5 -6.552 -4.464 16.02 1 49.7 ? CL 4Y1 803 B 1 HETATM 19 C C1 4Y1 . . . H 5 -7.362 -3.356 19.563 1 39.15 ? C1 4Y1 803 B 1 HETATM 20 N N2 4Y1 . . . H 5 -8.479 -2.623 19.526 1 37.22 ? N2 4Y1 803 B 1 HETATM 21 C C4 4Y1 . . . H 5 -8.514 -2.987 17.185 1 40.06 ? C4 4Y1 803 B 1 HETATM 22 C C8 4Y1 . . . H 5 -9.842 0.238 19.835 1 32.79 ? C8 4Y1 803 B 1 HETATM 23 N N10 4Y1 . . . H 5 -9.145 2.098 21.053 1 33.65 ? N10 4Y1 803 B 1 HETATM 24 C C14 4Y1 . . . H 5 -5.779 -4.426 20.893 1 41.92 ? C14 4Y1 803 B 1 HETATM 25 C C16 4Y1 . . . H 5 -6.259 -5.159 23.217 1 46.05 ? C16 4Y1 803 B 1 HETATM 26 C C19 4Y1 . . . H 5 -7.985 -6.496 24.833 1 47.31 ? C19 4Y1 803 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #