data_5C2T
#
_model_server_result.job_id            3Fynx8U0XgO6wdiL6rYDXg 
_model_server_result.datetime_utc      '2024-11-06 01:37:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c2t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":303}' 
#
_entry.id    5C2T 
#
_exptl.entry_id    5C2T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              295.795 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE3-S4 CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C2T 
_cell.length_a            122.813 
_cell.length_b            123.632 
_cell.length_c            219.812 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C2T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 M N N 
? 9 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 B SG CYS 182 B CYS 182 1_555 L FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc6 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc7 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc8 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc9 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc10 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc11 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc12 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc13 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc14 F SG CYS 89 F CYS 89 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc15 F SG CYS 94 F CYS 94 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc16 F SG CYS 97 F CYS 97 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc17 F SG CYS 109 F CYS 109 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc18 F SG CYS 182 F CYS 182 1_555 T FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc19 F SG CYS 185 F CYS 185 1_555 T FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc20 F SG CYS 188 F CYS 188 1_555 T FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc21 F SG CYS 192 F CYS 192 1_555 U FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc22 F SG CYS 239 F CYS 239 1_555 U FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc23 F SG CYS 245 F CYS 245 1_555 U FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc24 F SG CYS 249 F CYS 249 1_555 T FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc25 G NE2 HIS 131 G HIS 131 1_555 V FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc26 V FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
#
_chem_comp.formula           'Fe3 S4' 
_chem_comp.formula_weight    295.795 
_chem_comp.id                F3S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE3-S4 CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 F3S sing 246 n n 
FE1 S2 F3S sing 247 n n 
FE1 S3 F3S sing 248 n n 
FE3 S1 F3S sing 249 n n 
FE3 S3 F3S sing 250 n n 
FE3 S4 F3S sing 251 n n 
FE4 S2 F3S sing 252 n n 
FE4 S3 F3S sing 253 n n 
FE4 S4 F3S sing 254 n n 
#
_atom_sites.entry_id                     5C2T 
_atom_sites.fract_transf_matrix[1][1]    0.008142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004549 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 MLI A 1 701 701 MLI MLI . 
J 6 FAD A 1 702 702 FAD FAD . 
K 7 FES B 1 301 301 FES FES . 
L 8 SF4 B 1 302 302 SF4 SF4 . 
M 9 F3S B 1 303 303 F3S F3S . 
N 10 HEM C 1 201 201 HEM HEM . 
O 11 4YP C 1 202 301 4YP DRG . 
P 12 EPH D 1 201 201 EPH EPH . 
Q 5 MLI E 1 701 701 MLI MLI . 
R 6 FAD E 1 702 702 FAD FAD . 
S 7 FES F 1 301 301 FES FES . 
T 8 SF4 F 1 302 302 SF4 SF4 . 
U 9 F3S F 1 303 303 F3S F3S . 
V 10 HEM G 1 201 201 HEM HEM . 
W 11 4YP G 1 202 301 4YP DRG . 
X 12 EPH H 1 201 201 EPH EPH . 
Y 13 HOH A 1 801 10 HOH HOH . 
Y 13 HOH A 2 802 140 HOH HOH . 
Y 13 HOH A 3 803 91 HOH HOH . 
Y 13 HOH A 4 804 2 HOH HOH . 
Y 13 HOH A 5 805 9 HOH HOH . 
Y 13 HOH A 6 806 88 HOH HOH . 
Y 13 HOH A 7 807 94 HOH HOH . 
Y 13 HOH A 8 808 50 HOH HOH . 
Y 13 HOH A 9 809 55 HOH HOH . 
Y 13 HOH A 10 810 32 HOH HOH . 
Y 13 HOH A 11 811 136 HOH HOH . 
Y 13 HOH A 12 812 4 HOH HOH . 
Y 13 HOH A 13 813 39 HOH HOH . 
Y 13 HOH A 14 814 3 HOH HOH . 
Y 13 HOH A 15 815 6 HOH HOH . 
Y 13 HOH A 16 816 26 HOH HOH . 
Y 13 HOH A 17 817 25 HOH HOH . 
Y 13 HOH A 18 818 18 HOH HOH . 
Y 13 HOH A 19 819 27 HOH HOH . 
Y 13 HOH A 20 820 58 HOH HOH . 
Y 13 HOH A 21 821 5 HOH HOH . 
Y 13 HOH A 22 822 24 HOH HOH . 
Y 13 HOH A 23 823 118 HOH HOH . 
Y 13 HOH A 24 824 143 HOH HOH . 
Y 13 HOH A 25 825 141 HOH HOH . 
Y 13 HOH A 26 826 17 HOH HOH . 
Y 13 HOH A 27 827 110 HOH HOH . 
Y 13 HOH A 28 828 11 HOH HOH . 
Y 13 HOH A 29 829 21 HOH HOH . 
Y 13 HOH A 30 830 120 HOH HOH . 
Y 13 HOH A 31 831 48 HOH HOH . 
Y 13 HOH A 32 832 12 HOH HOH . 
Y 13 HOH A 33 833 63 HOH HOH . 
Y 13 HOH A 34 834 100 HOH HOH . 
Y 13 HOH A 35 835 31 HOH HOH . 
Y 13 HOH A 36 836 111 HOH HOH . 
Y 13 HOH A 37 837 23 HOH HOH . 
Y 13 HOH A 38 838 132 HOH HOH . 
Y 13 HOH A 39 839 105 HOH HOH . 
Y 13 HOH A 40 840 51 HOH HOH . 
Y 13 HOH A 41 841 129 HOH HOH . 
Y 13 HOH A 42 842 95 HOH HOH . 
Y 13 HOH A 43 843 127 HOH HOH . 
Y 13 HOH A 44 844 134 HOH HOH . 
Y 13 HOH A 45 845 61 HOH HOH . 
Y 13 HOH A 46 846 123 HOH HOH . 
Y 13 HOH A 47 847 114 HOH HOH . 
Y 13 HOH A 48 848 22 HOH HOH . 
Y 13 HOH A 49 849 60 HOH HOH . 
Y 13 HOH A 50 850 62 HOH HOH . 
Y 13 HOH A 51 851 56 HOH HOH . 
Y 13 HOH A 52 852 112 HOH HOH . 
Y 13 HOH A 53 853 133 HOH HOH . 
Y 13 HOH A 54 854 135 HOH HOH . 
Z 13 HOH B 1 401 97 HOH HOH . 
Z 13 HOH B 2 402 85 HOH HOH . 
Z 13 HOH B 3 403 13 HOH HOH . 
Z 13 HOH B 4 404 47 HOH HOH . 
Z 13 HOH B 5 405 42 HOH HOH . 
Z 13 HOH B 6 406 125 HOH HOH . 
Z 13 HOH B 7 407 101 HOH HOH . 
Z 13 HOH B 8 408 99 HOH HOH . 
Z 13 HOH B 9 409 128 HOH HOH . 
Z 13 HOH B 10 410 98 HOH HOH . 
Z 13 HOH B 11 411 82 HOH HOH . 
Z 13 HOH B 12 412 104 HOH HOH . 
Z 13 HOH B 13 413 81 HOH HOH . 
AA 13 HOH C 1 301 108 HOH HOH . 
AA 13 HOH C 2 302 1 HOH HOH . 
AA 13 HOH C 3 303 142 HOH HOH . 
AA 13 HOH C 4 304 103 HOH HOH . 
AA 13 HOH C 5 305 80 HOH HOH . 
AA 13 HOH C 6 306 131 HOH HOH . 
BA 13 HOH D 1 301 78 HOH HOH . 
BA 13 HOH D 2 302 79 HOH HOH . 
BA 13 HOH D 3 303 15 HOH HOH . 
BA 13 HOH D 4 304 14 HOH HOH . 
BA 13 HOH D 5 305 65 HOH HOH . 
BA 13 HOH D 6 306 87 HOH HOH . 
BA 13 HOH D 7 307 89 HOH HOH . 
CA 13 HOH E 1 801 138 HOH HOH . 
CA 13 HOH E 2 802 41 HOH HOH . 
CA 13 HOH E 3 803 59 HOH HOH . 
CA 13 HOH E 4 804 33 HOH HOH . 
CA 13 HOH E 5 805 29 HOH HOH . 
CA 13 HOH E 6 806 137 HOH HOH . 
CA 13 HOH E 7 807 96 HOH HOH . 
CA 13 HOH E 8 808 92 HOH HOH . 
CA 13 HOH E 9 809 124 HOH HOH . 
CA 13 HOH E 10 810 45 HOH HOH . 
DA 13 HOH F 1 401 119 HOH HOH . 
DA 13 HOH F 2 402 66 HOH HOH . 
DA 13 HOH F 3 403 113 HOH HOH . 
DA 13 HOH F 4 404 19 HOH HOH . 
DA 13 HOH F 5 405 106 HOH HOH . 
DA 13 HOH F 6 406 73 HOH HOH . 
DA 13 HOH F 7 407 86 HOH HOH . 
DA 13 HOH F 8 408 72 HOH HOH . 
DA 13 HOH F 9 409 107 HOH HOH . 
DA 13 HOH F 10 410 74 HOH HOH . 
EA 13 HOH G 1 301 8 HOH HOH . 
EA 13 HOH G 2 302 43 HOH HOH . 
EA 13 HOH G 3 303 67 HOH HOH . 
EA 13 HOH G 4 304 68 HOH HOH . 
FA 13 HOH H 1 301 144 HOH HOH . 
FA 13 HOH H 2 302 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 F3S . . . U 9 -22.16 -22.747 29.46 1 38.61 ? FE1 F3S 303 F 1 
HETATM 2 FE FE3 F3S . . . U 9 -22.664 -21.422 31.933 1 38.19 ? FE3 F3S 303 F 1 
HETATM 3 FE FE4 F3S . . . U 9 -20.048 -22.081 31.287 1 37.84 ? FE4 F3S 303 F 1 
HETATM 4 S S1 F3S . . . U 9 -23.946 -22.69 30.697 1 36.9 ? S1 F3S 303 F 1 
HETATM 5 S S2 F3S . . . U 9 -20.277 -23.754 29.912 1 41.61 ? S2 F3S 303 F 1 
HETATM 6 S S3 F3S . . . U 9 -21.459 -20.8 30.232 1 32.34 ? S3 F3S 303 F 1 
HETATM 7 S S4 F3S . . . U 9 -20.895 -21.613 33.226 1 36.68 ? S4 F3S 303 F 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#