data_5C2T # _model_server_result.job_id ds1LA2N3nZ8uj0KZwH2jrA _model_server_result.datetime_utc '2024-11-24 12:37:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 5C2T # _exptl.entry_id 5C2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C2T _cell.length_a 122.813 _cell.length_b 123.632 _cell.length_c 219.812 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B SG CYS 182 B CYS 182 1_555 L FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc7 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc11 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc13 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc14 F SG CYS 89 F CYS 89 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc15 F SG CYS 94 F CYS 94 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc16 F SG CYS 97 F CYS 97 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc17 F SG CYS 109 F CYS 109 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc18 F SG CYS 182 F CYS 182 1_555 T FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc19 F SG CYS 185 F CYS 185 1_555 T FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc20 F SG CYS 188 F CYS 188 1_555 T FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc21 F SG CYS 192 F CYS 192 1_555 U FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc22 F SG CYS 239 F CYS 239 1_555 U FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc23 F SG CYS 245 F CYS 245 1_555 U FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc24 F SG CYS 249 F CYS 249 1_555 T FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc25 G NE2 HIS 131 G HIS 131 1_555 V FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc26 V FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 586 n n C1 C3 MLI sing 587 n n C1 H11 MLI sing 588 n n C1 H12 MLI sing 589 n n C2 O6 MLI doub 590 n n C2 O7 MLI sing 591 n n C3 O8 MLI doub 592 n n C3 O9 MLI sing 593 n n # _atom_sites.entry_id 5C2T _atom_sites.fract_transf_matrix[1][1] 0.008142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MLI A 1 701 701 MLI MLI . J 6 FAD A 1 702 702 FAD FAD . K 7 FES B 1 301 301 FES FES . L 8 SF4 B 1 302 302 SF4 SF4 . M 9 F3S B 1 303 303 F3S F3S . N 10 HEM C 1 201 201 HEM HEM . O 11 4YP C 1 202 301 4YP DRG . P 12 EPH D 1 201 201 EPH EPH . Q 5 MLI E 1 701 701 MLI MLI . R 6 FAD E 1 702 702 FAD FAD . S 7 FES F 1 301 301 FES FES . T 8 SF4 F 1 302 302 SF4 SF4 . U 9 F3S F 1 303 303 F3S F3S . V 10 HEM G 1 201 201 HEM HEM . W 11 4YP G 1 202 301 4YP DRG . X 12 EPH H 1 201 201 EPH EPH . Y 13 HOH A 1 801 10 HOH HOH . Y 13 HOH A 2 802 140 HOH HOH . Y 13 HOH A 3 803 91 HOH HOH . Y 13 HOH A 4 804 2 HOH HOH . Y 13 HOH A 5 805 9 HOH HOH . Y 13 HOH A 6 806 88 HOH HOH . Y 13 HOH A 7 807 94 HOH HOH . Y 13 HOH A 8 808 50 HOH HOH . Y 13 HOH A 9 809 55 HOH HOH . Y 13 HOH A 10 810 32 HOH HOH . Y 13 HOH A 11 811 136 HOH HOH . Y 13 HOH A 12 812 4 HOH HOH . Y 13 HOH A 13 813 39 HOH HOH . Y 13 HOH A 14 814 3 HOH HOH . Y 13 HOH A 15 815 6 HOH HOH . Y 13 HOH A 16 816 26 HOH HOH . Y 13 HOH A 17 817 25 HOH HOH . Y 13 HOH A 18 818 18 HOH HOH . Y 13 HOH A 19 819 27 HOH HOH . Y 13 HOH A 20 820 58 HOH HOH . Y 13 HOH A 21 821 5 HOH HOH . Y 13 HOH A 22 822 24 HOH HOH . Y 13 HOH A 23 823 118 HOH HOH . Y 13 HOH A 24 824 143 HOH HOH . Y 13 HOH A 25 825 141 HOH HOH . Y 13 HOH A 26 826 17 HOH HOH . Y 13 HOH A 27 827 110 HOH HOH . Y 13 HOH A 28 828 11 HOH HOH . Y 13 HOH A 29 829 21 HOH HOH . Y 13 HOH A 30 830 120 HOH HOH . Y 13 HOH A 31 831 48 HOH HOH . Y 13 HOH A 32 832 12 HOH HOH . Y 13 HOH A 33 833 63 HOH HOH . Y 13 HOH A 34 834 100 HOH HOH . Y 13 HOH A 35 835 31 HOH HOH . Y 13 HOH A 36 836 111 HOH HOH . Y 13 HOH A 37 837 23 HOH HOH . Y 13 HOH A 38 838 132 HOH HOH . Y 13 HOH A 39 839 105 HOH HOH . Y 13 HOH A 40 840 51 HOH HOH . Y 13 HOH A 41 841 129 HOH HOH . Y 13 HOH A 42 842 95 HOH HOH . Y 13 HOH A 43 843 127 HOH HOH . Y 13 HOH A 44 844 134 HOH HOH . Y 13 HOH A 45 845 61 HOH HOH . Y 13 HOH A 46 846 123 HOH HOH . Y 13 HOH A 47 847 114 HOH HOH . Y 13 HOH A 48 848 22 HOH HOH . Y 13 HOH A 49 849 60 HOH HOH . Y 13 HOH A 50 850 62 HOH HOH . Y 13 HOH A 51 851 56 HOH HOH . Y 13 HOH A 52 852 112 HOH HOH . Y 13 HOH A 53 853 133 HOH HOH . Y 13 HOH A 54 854 135 HOH HOH . Z 13 HOH B 1 401 97 HOH HOH . Z 13 HOH B 2 402 85 HOH HOH . Z 13 HOH B 3 403 13 HOH HOH . Z 13 HOH B 4 404 47 HOH HOH . Z 13 HOH B 5 405 42 HOH HOH . Z 13 HOH B 6 406 125 HOH HOH . Z 13 HOH B 7 407 101 HOH HOH . Z 13 HOH B 8 408 99 HOH HOH . Z 13 HOH B 9 409 128 HOH HOH . Z 13 HOH B 10 410 98 HOH HOH . Z 13 HOH B 11 411 82 HOH HOH . Z 13 HOH B 12 412 104 HOH HOH . Z 13 HOH B 13 413 81 HOH HOH . AA 13 HOH C 1 301 108 HOH HOH . AA 13 HOH C 2 302 1 HOH HOH . AA 13 HOH C 3 303 142 HOH HOH . AA 13 HOH C 4 304 103 HOH HOH . AA 13 HOH C 5 305 80 HOH HOH . AA 13 HOH C 6 306 131 HOH HOH . BA 13 HOH D 1 301 78 HOH HOH . BA 13 HOH D 2 302 79 HOH HOH . BA 13 HOH D 3 303 15 HOH HOH . BA 13 HOH D 4 304 14 HOH HOH . BA 13 HOH D 5 305 65 HOH HOH . BA 13 HOH D 6 306 87 HOH HOH . BA 13 HOH D 7 307 89 HOH HOH . CA 13 HOH E 1 801 138 HOH HOH . CA 13 HOH E 2 802 41 HOH HOH . CA 13 HOH E 3 803 59 HOH HOH . CA 13 HOH E 4 804 33 HOH HOH . CA 13 HOH E 5 805 29 HOH HOH . CA 13 HOH E 6 806 137 HOH HOH . CA 13 HOH E 7 807 96 HOH HOH . CA 13 HOH E 8 808 92 HOH HOH . CA 13 HOH E 9 809 124 HOH HOH . CA 13 HOH E 10 810 45 HOH HOH . DA 13 HOH F 1 401 119 HOH HOH . DA 13 HOH F 2 402 66 HOH HOH . DA 13 HOH F 3 403 113 HOH HOH . DA 13 HOH F 4 404 19 HOH HOH . DA 13 HOH F 5 405 106 HOH HOH . DA 13 HOH F 6 406 73 HOH HOH . DA 13 HOH F 7 407 86 HOH HOH . DA 13 HOH F 8 408 72 HOH HOH . DA 13 HOH F 9 409 107 HOH HOH . DA 13 HOH F 10 410 74 HOH HOH . EA 13 HOH G 1 301 8 HOH HOH . EA 13 HOH G 2 302 43 HOH HOH . EA 13 HOH G 3 303 67 HOH HOH . EA 13 HOH G 4 304 68 HOH HOH . FA 13 HOH H 1 301 144 HOH HOH . FA 13 HOH H 2 302 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . I 5 -26.17 22.891 -24.15 1 37.08 ? C1 MLI 701 A 1 HETATM 2 C C2 MLI . . . I 5 -26.439 21.667 -23.297 1 38.9 ? C2 MLI 701 A 1 HETATM 3 C C3 MLI . . . I 5 -27.454 23.638 -24.343 1 36.93 ? C3 MLI 701 A 1 HETATM 4 O O6 MLI . . . I 5 -25.508 20.831 -23.176 1 38.91 ? O6 MLI 701 A 1 HETATM 5 O O7 MLI . . . I 5 -27.567 21.499 -22.76 1 38.78 ? O7 MLI 701 A 1 HETATM 6 O O8 MLI . . . I 5 -28.11 23.414 -25.375 1 37.8 ? O8 MLI 701 A 1 HETATM 7 O O9 MLI . . . I 5 -27.81 24.433 -23.456 1 36 ? O9 MLI 701 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #