data_5C37
#
_model_server_result.job_id            EWQnSuA41UmGGTUqauswKA 
_model_server_result.datetime_utc      '2024-12-21 17:08:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c37 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2202}' 
#
_entry.id    5C37 
#
_exptl.entry_id    5C37 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.9 
_cell.angle_gamma         90 
_cell.entry_id            5C37 
_cell.length_a            94.08 
_cell.length_b            80.52 
_cell.length_c            96.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C37 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 199 n n 
C1 C2 GOL sing 200 n n 
C1 H11 GOL sing 201 n n 
C1 H12 GOL sing 202 n n 
O1 HO1 GOL sing 203 n n 
C2 O2 GOL sing 204 n n 
C2 C3 GOL sing 205 n n 
C2 H2 GOL sing 206 n n 
O2 HO2 GOL sing 207 n n 
C3 O3 GOL sing 208 n n 
C3 H31 GOL sing 209 n n 
C3 H32 GOL sing 210 n n 
O3 HO3 GOL sing 211 n n 
#
_atom_sites.entry_id                     5C37 
_atom_sites.fract_transf_matrix[1][1]    0.010629 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005393 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012419 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 2201 1 NDP NDP . 
D 3 4XN A 1 2202 1 4XN INH . 
E 4 CL A 1 2203 1 CL CL . 
F 2 NDP C 1 2201 2 NDP NDP . 
G 5 GOL C 1 2202 1 GOL GOL . 
H 3 4XN C 1 2203 2 4XN INH . 
I 4 CL C 1 2204 2 CL CL . 
J 4 CL C 1 2205 3 CL CL . 
K 6 HOH A 1 2301 146 HOH HOH . 
K 6 HOH A 2 2302 176 HOH HOH . 
K 6 HOH A 3 2303 83 HOH HOH . 
K 6 HOH A 4 2304 136 HOH HOH . 
K 6 HOH A 5 2305 189 HOH HOH . 
K 6 HOH A 6 2306 7 HOH HOH . 
K 6 HOH A 7 2307 193 HOH HOH . 
K 6 HOH A 8 2308 191 HOH HOH . 
K 6 HOH A 9 2309 12 HOH HOH . 
K 6 HOH A 10 2310 56 HOH HOH . 
K 6 HOH A 11 2311 103 HOH HOH . 
K 6 HOH A 12 2312 37 HOH HOH . 
K 6 HOH A 13 2313 14 HOH HOH . 
K 6 HOH A 14 2314 196 HOH HOH . 
K 6 HOH A 15 2315 21 HOH HOH . 
K 6 HOH A 16 2316 36 HOH HOH . 
K 6 HOH A 17 2317 163 HOH HOH . 
K 6 HOH A 18 2318 54 HOH HOH . 
K 6 HOH A 19 2319 82 HOH HOH . 
K 6 HOH A 20 2320 47 HOH HOH . 
K 6 HOH A 21 2321 18 HOH HOH . 
K 6 HOH A 22 2322 27 HOH HOH . 
K 6 HOH A 23 2323 209 HOH HOH . 
K 6 HOH A 24 2324 105 HOH HOH . 
K 6 HOH A 25 2325 98 HOH HOH . 
K 6 HOH A 26 2326 223 HOH HOH . 
K 6 HOH A 27 2327 11 HOH HOH . 
K 6 HOH A 28 2328 24 HOH HOH . 
K 6 HOH A 29 2329 91 HOH HOH . 
K 6 HOH A 30 2330 137 HOH HOH . 
K 6 HOH A 31 2331 60 HOH HOH . 
K 6 HOH A 32 2332 15 HOH HOH . 
K 6 HOH A 33 2333 3 HOH HOH . 
K 6 HOH A 34 2334 31 HOH HOH . 
K 6 HOH A 35 2335 44 HOH HOH . 
K 6 HOH A 36 2336 26 HOH HOH . 
K 6 HOH A 37 2337 222 HOH HOH . 
K 6 HOH A 38 2338 110 HOH HOH . 
K 6 HOH A 39 2339 206 HOH HOH . 
K 6 HOH A 40 2340 48 HOH HOH . 
K 6 HOH A 41 2341 87 HOH HOH . 
K 6 HOH A 42 2342 79 HOH HOH . 
K 6 HOH A 43 2343 67 HOH HOH . 
K 6 HOH A 44 2344 100 HOH HOH . 
K 6 HOH A 45 2345 229 HOH HOH . 
K 6 HOH A 46 2346 35 HOH HOH . 
K 6 HOH A 47 2347 34 HOH HOH . 
K 6 HOH A 48 2348 109 HOH HOH . 
K 6 HOH A 49 2349 41 HOH HOH . 
K 6 HOH A 50 2350 53 HOH HOH . 
K 6 HOH A 51 2351 76 HOH HOH . 
K 6 HOH A 52 2352 85 HOH HOH . 
K 6 HOH A 53 2353 108 HOH HOH . 
K 6 HOH A 54 2354 165 HOH HOH . 
K 6 HOH A 55 2355 154 HOH HOH . 
K 6 HOH A 56 2356 84 HOH HOH . 
K 6 HOH A 57 2357 81 HOH HOH . 
K 6 HOH A 58 2358 144 HOH HOH . 
K 6 HOH A 59 2359 50 HOH HOH . 
K 6 HOH A 60 2360 75 HOH HOH . 
K 6 HOH A 61 2361 77 HOH HOH . 
K 6 HOH A 62 2362 92 HOH HOH . 
K 6 HOH A 63 2363 190 HOH HOH . 
K 6 HOH A 64 2364 40 HOH HOH . 
K 6 HOH A 65 2365 42 HOH HOH . 
K 6 HOH A 66 2366 175 HOH HOH . 
K 6 HOH A 67 2367 128 HOH HOH . 
K 6 HOH A 68 2368 153 HOH HOH . 
K 6 HOH A 69 2369 6 HOH HOH . 
K 6 HOH A 70 2370 72 HOH HOH . 
K 6 HOH A 71 2371 181 HOH HOH . 
K 6 HOH A 72 2372 46 HOH HOH . 
K 6 HOH A 73 2373 228 HOH HOH . 
K 6 HOH A 74 2374 185 HOH HOH . 
K 6 HOH A 75 2375 213 HOH HOH . 
K 6 HOH A 76 2376 68 HOH HOH . 
K 6 HOH A 77 2377 232 HOH HOH . 
K 6 HOH A 78 2378 124 HOH HOH . 
K 6 HOH A 79 2379 58 HOH HOH . 
K 6 HOH A 80 2380 121 HOH HOH . 
K 6 HOH A 81 2381 114 HOH HOH . 
K 6 HOH A 82 2382 125 HOH HOH . 
K 6 HOH A 83 2383 183 HOH HOH . 
K 6 HOH A 84 2384 66 HOH HOH . 
K 6 HOH A 85 2385 33 HOH HOH . 
K 6 HOH A 86 2386 159 HOH HOH . 
K 6 HOH A 87 2387 155 HOH HOH . 
K 6 HOH A 88 2388 179 HOH HOH . 
K 6 HOH A 89 2389 220 HOH HOH . 
K 6 HOH A 90 2390 202 HOH HOH . 
K 6 HOH A 91 2391 217 HOH HOH . 
K 6 HOH A 92 2392 180 HOH HOH . 
K 6 HOH A 93 2393 199 HOH HOH . 
K 6 HOH A 94 2394 201 HOH HOH . 
K 6 HOH A 95 2395 147 HOH HOH . 
K 6 HOH A 96 2396 234 HOH HOH . 
K 6 HOH A 97 2397 167 HOH HOH . 
K 6 HOH A 98 2398 174 HOH HOH . 
K 6 HOH A 99 2399 160 HOH HOH . 
K 6 HOH A 100 2400 200 HOH HOH . 
K 6 HOH A 101 2401 184 HOH HOH . 
K 6 HOH A 102 2402 192 HOH HOH . 
K 6 HOH A 103 2403 197 HOH HOH . 
K 6 HOH A 104 2404 208 HOH HOH . 
K 6 HOH A 105 2405 203 HOH HOH . 
K 6 HOH A 106 2406 149 HOH HOH . 
K 6 HOH A 107 2407 178 HOH HOH . 
L 6 HOH C 1 2301 115 HOH HOH . 
L 6 HOH C 2 2302 173 HOH HOH . 
L 6 HOH C 3 2303 145 HOH HOH . 
L 6 HOH C 4 2304 224 HOH HOH . 
L 6 HOH C 5 2305 1 HOH HOH . 
L 6 HOH C 6 2306 168 HOH HOH . 
L 6 HOH C 7 2307 157 HOH HOH . 
L 6 HOH C 8 2308 23 HOH HOH . 
L 6 HOH C 9 2309 57 HOH HOH . 
L 6 HOH C 10 2310 64 HOH HOH . 
L 6 HOH C 11 2311 162 HOH HOH . 
L 6 HOH C 12 2312 195 HOH HOH . 
L 6 HOH C 13 2313 133 HOH HOH . 
L 6 HOH C 14 2314 164 HOH HOH . 
L 6 HOH C 15 2315 32 HOH HOH . 
L 6 HOH C 16 2316 52 HOH HOH . 
L 6 HOH C 17 2317 16 HOH HOH . 
L 6 HOH C 18 2318 4 HOH HOH . 
L 6 HOH C 19 2319 43 HOH HOH . 
L 6 HOH C 20 2320 116 HOH HOH . 
L 6 HOH C 21 2321 55 HOH HOH . 
L 6 HOH C 22 2322 90 HOH HOH . 
L 6 HOH C 23 2323 22 HOH HOH . 
L 6 HOH C 24 2324 170 HOH HOH . 
L 6 HOH C 25 2325 49 HOH HOH . 
L 6 HOH C 26 2326 45 HOH HOH . 
L 6 HOH C 27 2327 233 HOH HOH . 
L 6 HOH C 28 2328 93 HOH HOH . 
L 6 HOH C 29 2329 61 HOH HOH . 
L 6 HOH C 30 2330 19 HOH HOH . 
L 6 HOH C 31 2331 8 HOH HOH . 
L 6 HOH C 32 2332 28 HOH HOH . 
L 6 HOH C 33 2333 135 HOH HOH . 
L 6 HOH C 34 2334 74 HOH HOH . 
L 6 HOH C 35 2335 106 HOH HOH . 
L 6 HOH C 36 2336 39 HOH HOH . 
L 6 HOH C 37 2337 101 HOH HOH . 
L 6 HOH C 38 2338 69 HOH HOH . 
L 6 HOH C 39 2339 20 HOH HOH . 
L 6 HOH C 40 2340 13 HOH HOH . 
L 6 HOH C 41 2341 219 HOH HOH . 
L 6 HOH C 42 2342 127 HOH HOH . 
L 6 HOH C 43 2343 17 HOH HOH . 
L 6 HOH C 44 2344 10 HOH HOH . 
L 6 HOH C 45 2345 194 HOH HOH . 
L 6 HOH C 46 2346 187 HOH HOH . 
L 6 HOH C 47 2347 2 HOH HOH . 
L 6 HOH C 48 2348 215 HOH HOH . 
L 6 HOH C 49 2349 97 HOH HOH . 
L 6 HOH C 50 2350 25 HOH HOH . 
L 6 HOH C 51 2351 134 HOH HOH . 
L 6 HOH C 52 2352 138 HOH HOH . 
L 6 HOH C 53 2353 231 HOH HOH . 
L 6 HOH C 54 2354 9 HOH HOH . 
L 6 HOH C 55 2355 182 HOH HOH . 
L 6 HOH C 56 2356 63 HOH HOH . 
L 6 HOH C 57 2357 89 HOH HOH . 
L 6 HOH C 58 2358 65 HOH HOH . 
L 6 HOH C 59 2359 141 HOH HOH . 
L 6 HOH C 60 2360 38 HOH HOH . 
L 6 HOH C 61 2361 51 HOH HOH . 
L 6 HOH C 62 2362 80 HOH HOH . 
L 6 HOH C 63 2363 104 HOH HOH . 
L 6 HOH C 64 2364 111 HOH HOH . 
L 6 HOH C 65 2365 95 HOH HOH . 
L 6 HOH C 66 2366 99 HOH HOH . 
L 6 HOH C 67 2367 235 HOH HOH . 
L 6 HOH C 68 2368 102 HOH HOH . 
L 6 HOH C 69 2369 142 HOH HOH . 
L 6 HOH C 70 2370 207 HOH HOH . 
L 6 HOH C 71 2371 62 HOH HOH . 
L 6 HOH C 72 2372 73 HOH HOH . 
L 6 HOH C 73 2373 132 HOH HOH . 
L 6 HOH C 74 2374 205 HOH HOH . 
L 6 HOH C 75 2375 131 HOH HOH . 
L 6 HOH C 76 2376 227 HOH HOH . 
L 6 HOH C 77 2377 107 HOH HOH . 
L 6 HOH C 78 2378 94 HOH HOH . 
L 6 HOH C 79 2379 70 HOH HOH . 
L 6 HOH C 80 2380 96 HOH HOH . 
L 6 HOH C 81 2381 29 HOH HOH . 
L 6 HOH C 82 2382 86 HOH HOH . 
L 6 HOH C 83 2383 150 HOH HOH . 
L 6 HOH C 84 2384 122 HOH HOH . 
L 6 HOH C 85 2385 59 HOH HOH . 
L 6 HOH C 86 2386 172 HOH HOH . 
L 6 HOH C 87 2387 186 HOH HOH . 
L 6 HOH C 88 2388 5 HOH HOH . 
L 6 HOH C 89 2389 143 HOH HOH . 
L 6 HOH C 90 2390 216 HOH HOH . 
L 6 HOH C 91 2391 166 HOH HOH . 
L 6 HOH C 92 2392 139 HOH HOH . 
L 6 HOH C 93 2393 177 HOH HOH . 
L 6 HOH C 94 2394 212 HOH HOH . 
L 6 HOH C 95 2395 169 HOH HOH . 
L 6 HOH C 96 2396 120 HOH HOH . 
L 6 HOH C 97 2397 118 HOH HOH . 
L 6 HOH C 98 2398 129 HOH HOH . 
L 6 HOH C 99 2399 112 HOH HOH . 
L 6 HOH C 100 2400 211 HOH HOH . 
L 6 HOH C 101 2401 204 HOH HOH . 
L 6 HOH C 102 2402 158 HOH HOH . 
L 6 HOH C 103 2403 171 HOH HOH . 
L 6 HOH C 104 2404 126 HOH HOH . 
L 6 HOH C 105 2405 152 HOH HOH . 
L 6 HOH C 106 2406 30 HOH HOH . 
L 6 HOH C 107 2407 230 HOH HOH . 
L 6 HOH C 108 2408 161 HOH HOH . 
L 6 HOH C 109 2409 119 HOH HOH . 
L 6 HOH C 110 2410 88 HOH HOH . 
L 6 HOH C 111 2411 221 HOH HOH . 
L 6 HOH C 112 2412 140 HOH HOH . 
L 6 HOH C 113 2413 148 HOH HOH . 
L 6 HOH C 114 2414 113 HOH HOH . 
L 6 HOH C 115 2415 188 HOH HOH . 
L 6 HOH C 116 2416 130 HOH HOH . 
L 6 HOH C 117 2417 123 HOH HOH . 
L 6 HOH C 118 2418 214 HOH HOH . 
L 6 HOH C 119 2419 198 HOH HOH . 
L 6 HOH C 120 2420 117 HOH HOH . 
L 6 HOH C 121 2421 226 HOH HOH . 
L 6 HOH C 122 2422 78 HOH HOH . 
L 6 HOH C 123 2423 71 HOH HOH . 
L 6 HOH C 124 2424 151 HOH HOH . 
L 6 HOH C 125 2425 225 HOH HOH . 
L 6 HOH C 126 2426 218 HOH HOH . 
L 6 HOH C 127 2427 156 HOH HOH . 
L 6 HOH C 128 2428 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 -0.467 13.674 54.85 1 54.17 ? C1 GOL 2202 C 1 
HETATM 2 O O1 GOL . . . G 5 0.122 13.991 56.095 1 56.32 ? O1 GOL 2202 C 1 
HETATM 3 C C2 GOL . . . G 5 -0.238 12.203 54.516 1 54.15 ? C2 GOL 2202 C 1 
HETATM 4 O O2 GOL . . . G 5 -1.47 11.513 54.419 1 60.16 ? O2 GOL 2202 C 1 
HETATM 5 C C3 GOL . . . G 5 0.547 12.098 53.211 1 51.55 ? C3 GOL 2202 C 1 
HETATM 6 O O3 GOL . . . G 5 1.853 12.59 53.407 1 51.82 ? O3 GOL 2202 C 1 
HETATM 7 H H11 GOL . . . G 5 -1.537 13.879 54.889 1 65 ? H11 GOL 2202 C 1 
HETATM 8 H H12 GOL . . . G 5 -0.032 14.298 54.069 1 65 ? H12 GOL 2202 C 1 
HETATM 9 H HO1 GOL . . . G 5 0.026 14.951 56.267 1 67.58 ? HO1 GOL 2202 C 1 
HETATM 10 H H2 GOL . . . G 5 0.362 11.762 55.312 1 64.98 ? H2 GOL 2202 C 1 
HETATM 11 H HO2 GOL . . . G 5 -2.001 11.893 53.689 1 72.19 ? HO2 GOL 2202 C 1 
HETATM 12 H H31 GOL . . . G 5 0.589 11.058 52.888 1 61.86 ? H31 GOL 2202 C 1 
HETATM 13 H H32 GOL . . . G 5 0.048 12.676 52.433 1 61.86 ? H32 GOL 2202 C 1 
HETATM 14 H HO3 GOL . . . G 5 2.403 11.897 53.83 1 62.18 ? HO3 GOL 2202 C 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           55 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           1023 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#