data_5C39
#
_model_server_result.job_id            eukCAynh5cFieCIF7Gx3Og 
_model_server_result.datetime_utc      '2024-11-24 17:35:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    5C39 
#
_exptl.entry_id    5C39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C39 
_cell.length_a            41.162 
_cell.length_b            52.465 
_cell.length_c            52.547 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 10 A GLU 11 1_555 C MN MN . A MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc2 A OE2 GLU 10 A GLU 11 1_555 C MN MN . A MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A OE1 GLU 40 A GLU 41 1_555 C MN MN . A MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc4 A OE2 GLU 40 A GLU 41 1_555 D MN MN . A MN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc5 A ND1 HIS 43 A HIS 44 1_555 C MN MN . A MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc6 C MN MN . A MN 101 1_555 E O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc7 C MN MN . A MN 101 1_555 B OE2 GLU 40 B GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc8 D MN MN . A MN 102 1_555 E O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc9 D MN MN . A MN 102 1_555 B OE1 GLU 10 B GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc10 D MN MN . A MN 102 1_555 B OE2 GLU 10 B GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc11 D MN MN . A MN 102 1_555 B OE1 GLU 40 B GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc12 D MN MN . A MN 102 1_555 B ND1 HIS 43 B HIS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C39 
_atom_sites.fract_transf_matrix[1][1]    0.024294 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 101 60 MN MN . 
D 2 MN A 1 102 60 MN MN . 
E 3 HOH A 1 201 89 HOH HOH . 
E 3 HOH A 2 202 72 HOH HOH . 
E 3 HOH A 3 203 46 HOH HOH . 
E 3 HOH A 4 204 49 HOH HOH . 
E 3 HOH A 5 205 59 HOH HOH . 
E 3 HOH A 6 206 62 HOH HOH . 
E 3 HOH A 7 207 36 HOH HOH . 
E 3 HOH A 8 208 75 HOH HOH . 
E 3 HOH A 9 209 9 HOH HOH . 
E 3 HOH A 10 210 34 HOH HOH . 
E 3 HOH A 11 211 56 HOH HOH . 
E 3 HOH A 12 212 27 HOH HOH . 
E 3 HOH A 13 213 77 HOH HOH . 
E 3 HOH A 14 214 29 HOH HOH . 
E 3 HOH A 15 215 48 HOH HOH . 
E 3 HOH A 16 216 52 HOH HOH . 
E 3 HOH A 17 217 40 HOH HOH . 
E 3 HOH A 18 218 26 HOH HOH . 
E 3 HOH A 19 219 4 HOH HOH . 
E 3 HOH A 20 220 76 HOH HOH . 
E 3 HOH A 21 221 39 HOH HOH . 
E 3 HOH A 22 222 37 HOH HOH . 
E 3 HOH A 23 223 24 HOH HOH . 
E 3 HOH A 24 224 55 HOH HOH . 
E 3 HOH A 25 225 58 HOH HOH . 
E 3 HOH A 26 226 88 HOH HOH . 
E 3 HOH A 27 227 10 HOH HOH . 
E 3 HOH A 28 228 81 HOH HOH . 
E 3 HOH A 29 229 78 HOH HOH . 
E 3 HOH A 30 230 61 HOH HOH . 
E 3 HOH A 31 231 90 HOH HOH . 
E 3 HOH A 32 232 92 HOH HOH . 
E 3 HOH A 33 233 86 HOH HOH . 
E 3 HOH A 34 234 28 HOH HOH . 
E 3 HOH A 35 235 68 HOH HOH . 
E 3 HOH A 36 236 41 HOH HOH . 
E 3 HOH A 37 237 35 HOH HOH . 
E 3 HOH A 38 238 13 HOH HOH . 
E 3 HOH A 39 239 32 HOH HOH . 
E 3 HOH A 40 240 64 HOH HOH . 
E 3 HOH A 41 241 66 HOH HOH . 
E 3 HOH A 42 242 22 HOH HOH . 
E 3 HOH A 43 243 63 HOH HOH . 
E 3 HOH A 44 244 70 HOH HOH . 
E 3 HOH A 45 245 7 HOH HOH . 
E 3 HOH A 46 246 31 HOH HOH . 
E 3 HOH A 47 247 74 HOH HOH . 
E 3 HOH A 48 248 60 HOH HOH . 
E 3 HOH A 49 249 44 HOH HOH . 
E 3 HOH A 50 250 14 HOH HOH . 
E 3 HOH A 51 251 91 HOH HOH . 
F 3 HOH B 1 201 20 HOH HOH . 
F 3 HOH B 2 202 25 HOH HOH . 
F 3 HOH B 3 203 18 HOH HOH . 
F 3 HOH B 4 204 83 HOH HOH . 
F 3 HOH B 5 205 85 HOH HOH . 
F 3 HOH B 6 206 1 HOH HOH . 
F 3 HOH B 7 207 43 HOH HOH . 
F 3 HOH B 8 208 51 HOH HOH . 
F 3 HOH B 9 209 17 HOH HOH . 
F 3 HOH B 10 210 3 HOH HOH . 
F 3 HOH B 11 211 21 HOH HOH . 
F 3 HOH B 12 212 84 HOH HOH . 
F 3 HOH B 13 213 67 HOH HOH . 
F 3 HOH B 14 214 57 HOH HOH . 
F 3 HOH B 15 215 5 HOH HOH . 
F 3 HOH B 16 216 69 HOH HOH . 
F 3 HOH B 17 217 16 HOH HOH . 
F 3 HOH B 18 218 45 HOH HOH . 
F 3 HOH B 19 219 30 HOH HOH . 
F 3 HOH B 20 220 15 HOH HOH . 
F 3 HOH B 21 221 8 HOH HOH . 
F 3 HOH B 22 222 47 HOH HOH . 
F 3 HOH B 23 223 12 HOH HOH . 
F 3 HOH B 24 224 11 HOH HOH . 
F 3 HOH B 25 225 6 HOH HOH . 
F 3 HOH B 26 226 65 HOH HOH . 
F 3 HOH B 27 227 87 HOH HOH . 
F 3 HOH B 28 228 73 HOH HOH . 
F 3 HOH B 29 229 2 HOH HOH . 
F 3 HOH B 30 230 82 HOH HOH . 
F 3 HOH B 31 231 19 HOH HOH . 
F 3 HOH B 32 232 33 HOH HOH . 
F 3 HOH B 33 233 38 HOH HOH . 
F 3 HOH B 34 234 93 HOH HOH . 
F 3 HOH B 35 235 71 HOH HOH . 
F 3 HOH B 36 236 54 HOH HOH . 
F 3 HOH B 37 237 50 HOH HOH . 
F 3 HOH B 38 238 23 HOH HOH . 
F 3 HOH B 39 239 80 HOH HOH . 
F 3 HOH B 40 240 79 HOH HOH . 
F 3 HOH B 41 241 42 HOH HOH . 
F 3 HOH B 42 242 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -7.262 
_atom_site.Cartn_y               -6.057 
_atom_site.Cartn_z               4.432 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.98 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#