data_5C3B
#
_model_server_result.job_id            9BWxNCOI_GugvoFOnaBLSg 
_model_server_result.datetime_utc      '2024-11-13 03:02:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5C3B 
#
_exptl.entry_id    5C3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C3B 
_cell.length_a            52.53 
_cell.length_b            149.55 
_cell.length_c            79.18 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -52.53 0 -39.59 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 154 A ASP 211 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc2 A OD1 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc3 A OD2 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc4 B MN MN . A MN 401 1_555 D O23 URM . A URM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc5 B MN MN . A MN 401 1_555 D O10 URM . A URM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc6 B MN MN . A MN 401 1_555 E O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C3B 
_atom_sites.fract_transf_matrix[1][1]    0.019037 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006687 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012629 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 401 1 MN MN . 
C 3 DA8 A 1 402 1 DA8 DAA . 
D 4 URM A 1 403 1 URM URM . 
E 5 HOH A 1 501 282 HOH HOH . 
E 5 HOH A 2 502 288 HOH HOH . 
E 5 HOH A 3 503 206 HOH HOH . 
E 5 HOH A 4 504 140 HOH HOH . 
E 5 HOH A 5 505 151 HOH HOH . 
E 5 HOH A 6 506 217 HOH HOH . 
E 5 HOH A 7 507 303 HOH HOH . 
E 5 HOH A 8 508 30 HOH HOH . 
E 5 HOH A 9 509 48 HOH HOH . 
E 5 HOH A 10 510 79 HOH HOH . 
E 5 HOH A 11 511 97 HOH HOH . 
E 5 HOH A 12 512 106 HOH HOH . 
E 5 HOH A 13 513 118 HOH HOH . 
E 5 HOH A 14 514 231 HOH HOH . 
E 5 HOH A 15 515 78 HOH HOH . 
E 5 HOH A 16 516 216 HOH HOH . 
E 5 HOH A 17 517 243 HOH HOH . 
E 5 HOH A 18 518 15 HOH HOH . 
E 5 HOH A 19 519 60 HOH HOH . 
E 5 HOH A 20 520 81 HOH HOH . 
E 5 HOH A 21 521 127 HOH HOH . 
E 5 HOH A 22 522 184 HOH HOH . 
E 5 HOH A 23 523 91 HOH HOH . 
E 5 HOH A 24 524 68 HOH HOH . 
E 5 HOH A 25 525 132 HOH HOH . 
E 5 HOH A 26 526 287 HOH HOH . 
E 5 HOH A 27 527 152 HOH HOH . 
E 5 HOH A 28 528 273 HOH HOH . 
E 5 HOH A 29 529 18 HOH HOH . 
E 5 HOH A 30 530 300 HOH HOH . 
E 5 HOH A 31 531 96 HOH HOH . 
E 5 HOH A 32 532 139 HOH HOH . 
E 5 HOH A 33 533 17 HOH HOH . 
E 5 HOH A 34 534 145 HOH HOH . 
E 5 HOH A 35 535 133 HOH HOH . 
E 5 HOH A 36 536 92 HOH HOH . 
E 5 HOH A 37 537 112 HOH HOH . 
E 5 HOH A 38 538 141 HOH HOH . 
E 5 HOH A 39 539 51 HOH HOH . 
E 5 HOH A 40 540 177 HOH HOH . 
E 5 HOH A 41 541 131 HOH HOH . 
E 5 HOH A 42 542 45 HOH HOH . 
E 5 HOH A 43 543 1 HOH HOH . 
E 5 HOH A 44 544 43 HOH HOH . 
E 5 HOH A 45 545 9 HOH HOH . 
E 5 HOH A 46 546 101 HOH HOH . 
E 5 HOH A 47 547 161 HOH HOH . 
E 5 HOH A 48 548 162 HOH HOH . 
E 5 HOH A 49 549 69 HOH HOH . 
E 5 HOH A 50 550 150 HOH HOH . 
E 5 HOH A 51 551 85 HOH HOH . 
E 5 HOH A 52 552 25 HOH HOH . 
E 5 HOH A 53 553 117 HOH HOH . 
E 5 HOH A 54 554 204 HOH HOH . 
E 5 HOH A 55 555 294 HOH HOH . 
E 5 HOH A 56 556 284 HOH HOH . 
E 5 HOH A 57 557 3 HOH HOH . 
E 5 HOH A 58 558 291 HOH HOH . 
E 5 HOH A 59 559 202 HOH HOH . 
E 5 HOH A 60 560 67 HOH HOH . 
E 5 HOH A 61 561 54 HOH HOH . 
E 5 HOH A 62 562 93 HOH HOH . 
E 5 HOH A 63 563 34 HOH HOH . 
E 5 HOH A 64 564 12 HOH HOH . 
E 5 HOH A 65 565 27 HOH HOH . 
E 5 HOH A 66 566 57 HOH HOH . 
E 5 HOH A 67 567 130 HOH HOH . 
E 5 HOH A 68 568 198 HOH HOH . 
E 5 HOH A 69 569 29 HOH HOH . 
E 5 HOH A 70 570 47 HOH HOH . 
E 5 HOH A 71 571 293 HOH HOH . 
E 5 HOH A 72 572 147 HOH HOH . 
E 5 HOH A 73 573 120 HOH HOH . 
E 5 HOH A 74 574 24 HOH HOH . 
E 5 HOH A 75 575 172 HOH HOH . 
E 5 HOH A 76 576 122 HOH HOH . 
E 5 HOH A 77 577 138 HOH HOH . 
E 5 HOH A 78 578 74 HOH HOH . 
E 5 HOH A 79 579 50 HOH HOH . 
E 5 HOH A 80 580 156 HOH HOH . 
E 5 HOH A 81 581 33 HOH HOH . 
E 5 HOH A 82 582 129 HOH HOH . 
E 5 HOH A 83 583 56 HOH HOH . 
E 5 HOH A 84 584 26 HOH HOH . 
E 5 HOH A 85 585 2 HOH HOH . 
E 5 HOH A 86 586 52 HOH HOH . 
E 5 HOH A 87 587 10 HOH HOH . 
E 5 HOH A 88 588 98 HOH HOH . 
E 5 HOH A 89 589 187 HOH HOH . 
E 5 HOH A 90 590 11 HOH HOH . 
E 5 HOH A 91 591 193 HOH HOH . 
E 5 HOH A 92 592 63 HOH HOH . 
E 5 HOH A 93 593 61 HOH HOH . 
E 5 HOH A 94 594 148 HOH HOH . 
E 5 HOH A 95 595 142 HOH HOH . 
E 5 HOH A 96 596 5 HOH HOH . 
E 5 HOH A 97 597 7 HOH HOH . 
E 5 HOH A 98 598 89 HOH HOH . 
E 5 HOH A 99 599 186 HOH HOH . 
E 5 HOH A 100 600 4 HOH HOH . 
E 5 HOH A 101 601 13 HOH HOH . 
E 5 HOH A 102 602 41 HOH HOH . 
E 5 HOH A 103 603 32 HOH HOH . 
E 5 HOH A 104 604 159 HOH HOH . 
E 5 HOH A 105 605 39 HOH HOH . 
E 5 HOH A 106 606 72 HOH HOH . 
E 5 HOH A 107 607 169 HOH HOH . 
E 5 HOH A 108 608 295 HOH HOH . 
E 5 HOH A 109 609 20 HOH HOH . 
E 5 HOH A 110 610 214 HOH HOH . 
E 5 HOH A 111 611 64 HOH HOH . 
E 5 HOH A 112 612 201 HOH HOH . 
E 5 HOH A 113 613 158 HOH HOH . 
E 5 HOH A 114 614 19 HOH HOH . 
E 5 HOH A 115 615 42 HOH HOH . 
E 5 HOH A 116 616 62 HOH HOH . 
E 5 HOH A 117 617 175 HOH HOH . 
E 5 HOH A 118 618 167 HOH HOH . 
E 5 HOH A 119 619 103 HOH HOH . 
E 5 HOH A 120 620 36 HOH HOH . 
E 5 HOH A 121 621 170 HOH HOH . 
E 5 HOH A 122 622 58 HOH HOH . 
E 5 HOH A 123 623 6 HOH HOH . 
E 5 HOH A 124 624 38 HOH HOH . 
E 5 HOH A 125 625 277 HOH HOH . 
E 5 HOH A 126 626 208 HOH HOH . 
E 5 HOH A 127 627 87 HOH HOH . 
E 5 HOH A 128 628 301 HOH HOH . 
E 5 HOH A 129 629 76 HOH HOH . 
E 5 HOH A 130 630 108 HOH HOH . 
E 5 HOH A 131 631 137 HOH HOH . 
E 5 HOH A 132 632 23 HOH HOH . 
E 5 HOH A 133 633 99 HOH HOH . 
E 5 HOH A 134 634 100 HOH HOH . 
E 5 HOH A 135 635 31 HOH HOH . 
E 5 HOH A 136 636 227 HOH HOH . 
E 5 HOH A 137 637 82 HOH HOH . 
E 5 HOH A 138 638 199 HOH HOH . 
E 5 HOH A 139 639 114 HOH HOH . 
E 5 HOH A 140 640 71 HOH HOH . 
E 5 HOH A 141 641 77 HOH HOH . 
E 5 HOH A 142 642 8 HOH HOH . 
E 5 HOH A 143 643 252 HOH HOH . 
E 5 HOH A 144 644 283 HOH HOH . 
E 5 HOH A 145 645 229 HOH HOH . 
E 5 HOH A 146 646 176 HOH HOH . 
E 5 HOH A 147 647 171 HOH HOH . 
E 5 HOH A 148 648 80 HOH HOH . 
E 5 HOH A 149 649 104 HOH HOH . 
E 5 HOH A 150 650 75 HOH HOH . 
E 5 HOH A 151 651 70 HOH HOH . 
E 5 HOH A 152 652 95 HOH HOH . 
E 5 HOH A 153 653 254 HOH HOH . 
E 5 HOH A 154 654 128 HOH HOH . 
E 5 HOH A 155 655 195 HOH HOH . 
E 5 HOH A 156 656 49 HOH HOH . 
E 5 HOH A 157 657 119 HOH HOH . 
E 5 HOH A 158 658 226 HOH HOH . 
E 5 HOH A 159 659 73 HOH HOH . 
E 5 HOH A 160 660 37 HOH HOH . 
E 5 HOH A 161 661 125 HOH HOH . 
E 5 HOH A 162 662 66 HOH HOH . 
E 5 HOH A 163 663 65 HOH HOH . 
E 5 HOH A 164 664 181 HOH HOH . 
E 5 HOH A 165 665 21 HOH HOH . 
E 5 HOH A 166 666 149 HOH HOH . 
E 5 HOH A 167 667 188 HOH HOH . 
E 5 HOH A 168 668 115 HOH HOH . 
E 5 HOH A 169 669 230 HOH HOH . 
E 5 HOH A 170 670 28 HOH HOH . 
E 5 HOH A 171 671 14 HOH HOH . 
E 5 HOH A 172 672 16 HOH HOH . 
E 5 HOH A 173 673 113 HOH HOH . 
E 5 HOH A 174 674 265 HOH HOH . 
E 5 HOH A 175 675 213 HOH HOH . 
E 5 HOH A 176 676 232 HOH HOH . 
E 5 HOH A 177 677 124 HOH HOH . 
E 5 HOH A 178 678 35 HOH HOH . 
E 5 HOH A 179 679 44 HOH HOH . 
E 5 HOH A 180 680 222 HOH HOH . 
E 5 HOH A 181 681 289 HOH HOH . 
E 5 HOH A 182 682 269 HOH HOH . 
E 5 HOH A 183 683 174 HOH HOH . 
E 5 HOH A 184 684 116 HOH HOH . 
E 5 HOH A 185 685 166 HOH HOH . 
E 5 HOH A 186 686 136 HOH HOH . 
E 5 HOH A 187 687 88 HOH HOH . 
E 5 HOH A 188 688 154 HOH HOH . 
E 5 HOH A 189 689 197 HOH HOH . 
E 5 HOH A 190 690 134 HOH HOH . 
E 5 HOH A 191 691 165 HOH HOH . 
E 5 HOH A 192 692 155 HOH HOH . 
E 5 HOH A 193 693 239 HOH HOH . 
E 5 HOH A 194 694 90 HOH HOH . 
E 5 HOH A 195 695 102 HOH HOH . 
E 5 HOH A 196 696 192 HOH HOH . 
E 5 HOH A 197 697 191 HOH HOH . 
E 5 HOH A 198 698 59 HOH HOH . 
E 5 HOH A 199 699 53 HOH HOH . 
E 5 HOH A 200 700 55 HOH HOH . 
E 5 HOH A 201 701 225 HOH HOH . 
E 5 HOH A 202 702 105 HOH HOH . 
E 5 HOH A 203 703 86 HOH HOH . 
E 5 HOH A 204 704 157 HOH HOH . 
E 5 HOH A 205 705 160 HOH HOH . 
E 5 HOH A 206 706 299 HOH HOH . 
E 5 HOH A 207 707 292 HOH HOH . 
E 5 HOH A 208 708 22 HOH HOH . 
E 5 HOH A 209 709 109 HOH HOH . 
E 5 HOH A 210 710 285 HOH HOH . 
E 5 HOH A 211 711 281 HOH HOH . 
E 5 HOH A 212 712 260 HOH HOH . 
E 5 HOH A 213 713 240 HOH HOH . 
E 5 HOH A 214 714 219 HOH HOH . 
E 5 HOH A 215 715 286 HOH HOH . 
E 5 HOH A 216 716 126 HOH HOH . 
E 5 HOH A 217 717 245 HOH HOH . 
E 5 HOH A 218 718 276 HOH HOH . 
E 5 HOH A 219 719 40 HOH HOH . 
E 5 HOH A 220 720 256 HOH HOH . 
E 5 HOH A 221 721 224 HOH HOH . 
E 5 HOH A 222 722 164 HOH HOH . 
E 5 HOH A 223 723 262 HOH HOH . 
E 5 HOH A 224 724 238 HOH HOH . 
E 5 HOH A 225 725 210 HOH HOH . 
E 5 HOH A 226 726 247 HOH HOH . 
E 5 HOH A 227 727 249 HOH HOH . 
E 5 HOH A 228 728 246 HOH HOH . 
E 5 HOH A 229 729 46 HOH HOH . 
E 5 HOH A 230 730 233 HOH HOH . 
E 5 HOH A 231 731 259 HOH HOH . 
E 5 HOH A 232 732 257 HOH HOH . 
E 5 HOH A 233 733 143 HOH HOH . 
E 5 HOH A 234 734 266 HOH HOH . 
E 5 HOH A 235 735 182 HOH HOH . 
E 5 HOH A 236 736 223 HOH HOH . 
E 5 HOH A 237 737 255 HOH HOH . 
E 5 HOH A 238 738 242 HOH HOH . 
E 5 HOH A 239 739 248 HOH HOH . 
E 5 HOH A 240 740 84 HOH HOH . 
E 5 HOH A 241 741 111 HOH HOH . 
E 5 HOH A 242 742 180 HOH HOH . 
E 5 HOH A 243 743 173 HOH HOH . 
E 5 HOH A 244 744 135 HOH HOH . 
E 5 HOH A 245 745 274 HOH HOH . 
E 5 HOH A 246 746 244 HOH HOH . 
E 5 HOH A 247 747 253 HOH HOH . 
E 5 HOH A 248 748 183 HOH HOH . 
E 5 HOH A 249 749 263 HOH HOH . 
E 5 HOH A 250 750 168 HOH HOH . 
E 5 HOH A 251 751 207 HOH HOH . 
E 5 HOH A 252 752 261 HOH HOH . 
E 5 HOH A 253 753 107 HOH HOH . 
E 5 HOH A 254 754 194 HOH HOH . 
E 5 HOH A 255 755 290 HOH HOH . 
E 5 HOH A 256 756 189 HOH HOH . 
E 5 HOH A 257 757 94 HOH HOH . 
E 5 HOH A 258 758 190 HOH HOH . 
E 5 HOH A 259 759 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -11.562 
_atom_site.Cartn_y               16.865 
_atom_site.Cartn_z               4.062 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.4 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#