data_5C3D # _model_server_result.job_id 0D3IRRGogyRQM-nWKErbMQ _model_server_result.datetime_utc '2024-11-13 02:51:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5C3D # _exptl.entry_id 5C3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.147 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-METHOXYETHOXY)ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C3D _cell.length_a 52.54 _cell.length_b 149.77 _cell.length_c 79.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -52.54 0 39.635 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 154 A ASP 211 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OD1 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A OD2 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 B MN MN . A MN 401 1_555 D O10 URM . A URM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 B MN MN . A MN 401 1_555 D O23 URM . A URM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 B MN MN . A MN 401 1_555 E O HOH . A HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C5 H12 O3' _chem_comp.formula_weight 120.147 _chem_comp.id PG0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-METHOXYETHOXY)ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PEG 6000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O2 PG0 sing 237 n n C5 H51 PG0 sing 238 n n C5 H52 PG0 sing 239 n n C5 H53 PG0 sing 240 n n O2 C4 PG0 sing 241 n n C4 C3 PG0 sing 242 n n C4 H41 PG0 sing 243 n n C4 H42 PG0 sing 244 n n C3 O1 PG0 sing 245 n n C3 H31 PG0 sing 246 n n C3 H32 PG0 sing 247 n n O1 C2 PG0 sing 248 n n C2 C1 PG0 sing 249 n n C2 H21 PG0 sing 250 n n C2 H22 PG0 sing 251 n n C1 OTT PG0 sing 252 n n C1 H11 PG0 sing 253 n n C1 H12 PG0 sing 254 n n OTT HTT PG0 sing 255 n n # _atom_sites.entry_id 5C3D _atom_sites.fract_transf_matrix[1][1] 0.019033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 347 MN MN . C 3 PG0 A 1 402 1 PG0 PGE . D 4 URM A 1 403 1 URM URM . E 5 HOH A 1 501 225 HOH HOH . E 5 HOH A 2 502 240 HOH HOH . E 5 HOH A 3 503 245 HOH HOH . E 5 HOH A 4 504 67 HOH HOH . E 5 HOH A 5 505 112 HOH HOH . E 5 HOH A 6 506 46 HOH HOH . E 5 HOH A 7 507 237 HOH HOH . E 5 HOH A 8 508 226 HOH HOH . E 5 HOH A 9 509 124 HOH HOH . E 5 HOH A 10 510 193 HOH HOH . E 5 HOH A 11 511 60 HOH HOH . E 5 HOH A 12 512 36 HOH HOH . E 5 HOH A 13 513 212 HOH HOH . E 5 HOH A 14 514 9 HOH HOH . E 5 HOH A 15 515 105 HOH HOH . E 5 HOH A 16 516 83 HOH HOH . E 5 HOH A 17 517 120 HOH HOH . E 5 HOH A 18 518 175 HOH HOH . E 5 HOH A 19 519 224 HOH HOH . E 5 HOH A 20 520 153 HOH HOH . E 5 HOH A 21 521 163 HOH HOH . E 5 HOH A 22 522 53 HOH HOH . E 5 HOH A 23 523 51 HOH HOH . E 5 HOH A 24 524 114 HOH HOH . E 5 HOH A 25 525 208 HOH HOH . E 5 HOH A 26 526 109 HOH HOH . E 5 HOH A 27 527 222 HOH HOH . E 5 HOH A 28 528 131 HOH HOH . E 5 HOH A 29 529 199 HOH HOH . E 5 HOH A 30 530 43 HOH HOH . E 5 HOH A 31 531 42 HOH HOH . E 5 HOH A 32 532 160 HOH HOH . E 5 HOH A 33 533 195 HOH HOH . E 5 HOH A 34 534 45 HOH HOH . E 5 HOH A 35 535 164 HOH HOH . E 5 HOH A 36 536 143 HOH HOH . E 5 HOH A 37 537 29 HOH HOH . E 5 HOH A 38 538 2 HOH HOH . E 5 HOH A 39 539 76 HOH HOH . E 5 HOH A 40 540 184 HOH HOH . E 5 HOH A 41 541 158 HOH HOH . E 5 HOH A 42 542 65 HOH HOH . E 5 HOH A 43 543 188 HOH HOH . E 5 HOH A 44 544 238 HOH HOH . E 5 HOH A 45 545 94 HOH HOH . E 5 HOH A 46 546 23 HOH HOH . E 5 HOH A 47 547 96 HOH HOH . E 5 HOH A 48 548 87 HOH HOH . E 5 HOH A 49 549 24 HOH HOH . E 5 HOH A 50 550 58 HOH HOH . E 5 HOH A 51 551 32 HOH HOH . E 5 HOH A 52 552 55 HOH HOH . E 5 HOH A 53 553 102 HOH HOH . E 5 HOH A 54 554 179 HOH HOH . E 5 HOH A 55 555 85 HOH HOH . E 5 HOH A 56 556 66 HOH HOH . E 5 HOH A 57 557 126 HOH HOH . E 5 HOH A 58 558 210 HOH HOH . E 5 HOH A 59 559 7 HOH HOH . E 5 HOH A 60 560 39 HOH HOH . E 5 HOH A 61 561 93 HOH HOH . E 5 HOH A 62 562 54 HOH HOH . E 5 HOH A 63 563 50 HOH HOH . E 5 HOH A 64 564 27 HOH HOH . E 5 HOH A 65 565 176 HOH HOH . E 5 HOH A 66 566 151 HOH HOH . E 5 HOH A 67 567 149 HOH HOH . E 5 HOH A 68 568 133 HOH HOH . E 5 HOH A 69 569 69 HOH HOH . E 5 HOH A 70 570 4 HOH HOH . E 5 HOH A 71 571 47 HOH HOH . E 5 HOH A 72 572 34 HOH HOH . E 5 HOH A 73 573 8 HOH HOH . E 5 HOH A 74 574 61 HOH HOH . E 5 HOH A 75 575 97 HOH HOH . E 5 HOH A 76 576 122 HOH HOH . E 5 HOH A 77 577 22 HOH HOH . E 5 HOH A 78 578 38 HOH HOH . E 5 HOH A 79 579 170 HOH HOH . E 5 HOH A 80 580 71 HOH HOH . E 5 HOH A 81 581 91 HOH HOH . E 5 HOH A 82 582 56 HOH HOH . E 5 HOH A 83 583 80 HOH HOH . E 5 HOH A 84 584 141 HOH HOH . E 5 HOH A 85 585 20 HOH HOH . E 5 HOH A 86 586 13 HOH HOH . E 5 HOH A 87 587 5 HOH HOH . E 5 HOH A 88 588 75 HOH HOH . E 5 HOH A 89 589 147 HOH HOH . E 5 HOH A 90 590 78 HOH HOH . E 5 HOH A 91 591 40 HOH HOH . E 5 HOH A 92 592 110 HOH HOH . E 5 HOH A 93 593 194 HOH HOH . E 5 HOH A 94 594 108 HOH HOH . E 5 HOH A 95 595 82 HOH HOH . E 5 HOH A 96 596 25 HOH HOH . E 5 HOH A 97 597 100 HOH HOH . E 5 HOH A 98 598 95 HOH HOH . E 5 HOH A 99 599 146 HOH HOH . E 5 HOH A 100 600 68 HOH HOH . E 5 HOH A 101 601 14 HOH HOH . E 5 HOH A 102 602 209 HOH HOH . E 5 HOH A 103 603 161 HOH HOH . E 5 HOH A 104 604 162 HOH HOH . E 5 HOH A 105 605 72 HOH HOH . E 5 HOH A 106 606 31 HOH HOH . E 5 HOH A 107 607 79 HOH HOH . E 5 HOH A 108 608 233 HOH HOH . E 5 HOH A 109 609 41 HOH HOH . E 5 HOH A 110 610 118 HOH HOH . E 5 HOH A 111 611 44 HOH HOH . E 5 HOH A 112 612 99 HOH HOH . E 5 HOH A 113 613 117 HOH HOH . E 5 HOH A 114 614 104 HOH HOH . E 5 HOH A 115 615 168 HOH HOH . E 5 HOH A 116 616 246 HOH HOH . E 5 HOH A 117 617 130 HOH HOH . E 5 HOH A 118 618 132 HOH HOH . E 5 HOH A 119 619 186 HOH HOH . E 5 HOH A 120 620 111 HOH HOH . E 5 HOH A 121 621 77 HOH HOH . E 5 HOH A 122 622 230 HOH HOH . E 5 HOH A 123 623 180 HOH HOH . E 5 HOH A 124 624 181 HOH HOH . E 5 HOH A 125 625 70 HOH HOH . E 5 HOH A 126 626 125 HOH HOH . E 5 HOH A 127 627 173 HOH HOH . E 5 HOH A 128 628 98 HOH HOH . E 5 HOH A 129 629 17 HOH HOH . E 5 HOH A 130 630 229 HOH HOH . E 5 HOH A 131 631 213 HOH HOH . E 5 HOH A 132 632 148 HOH HOH . E 5 HOH A 133 633 221 HOH HOH . E 5 HOH A 134 634 6 HOH HOH . E 5 HOH A 135 635 239 HOH HOH . E 5 HOH A 136 636 106 HOH HOH . E 5 HOH A 137 637 63 HOH HOH . E 5 HOH A 138 638 90 HOH HOH . E 5 HOH A 139 639 243 HOH HOH . E 5 HOH A 140 640 113 HOH HOH . E 5 HOH A 141 641 35 HOH HOH . E 5 HOH A 142 642 16 HOH HOH . E 5 HOH A 143 643 152 HOH HOH . E 5 HOH A 144 644 217 HOH HOH . E 5 HOH A 145 645 101 HOH HOH . E 5 HOH A 146 646 15 HOH HOH . E 5 HOH A 147 647 177 HOH HOH . E 5 HOH A 148 648 127 HOH HOH . E 5 HOH A 149 649 144 HOH HOH . E 5 HOH A 150 650 48 HOH HOH . E 5 HOH A 151 651 84 HOH HOH . E 5 HOH A 152 652 73 HOH HOH . E 5 HOH A 153 653 159 HOH HOH . E 5 HOH A 154 654 137 HOH HOH . E 5 HOH A 155 655 187 HOH HOH . E 5 HOH A 156 656 33 HOH HOH . E 5 HOH A 157 657 21 HOH HOH . E 5 HOH A 158 658 19 HOH HOH . E 5 HOH A 159 659 12 HOH HOH . E 5 HOH A 160 660 138 HOH HOH . E 5 HOH A 161 661 26 HOH HOH . E 5 HOH A 162 662 37 HOH HOH . E 5 HOH A 163 663 136 HOH HOH . E 5 HOH A 164 664 185 HOH HOH . E 5 HOH A 165 665 107 HOH HOH . E 5 HOH A 166 666 10 HOH HOH . E 5 HOH A 167 667 92 HOH HOH . E 5 HOH A 168 668 116 HOH HOH . E 5 HOH A 169 669 86 HOH HOH . E 5 HOH A 170 670 52 HOH HOH . E 5 HOH A 171 671 1 HOH HOH . E 5 HOH A 172 672 11 HOH HOH . E 5 HOH A 173 673 157 HOH HOH . E 5 HOH A 174 674 88 HOH HOH . E 5 HOH A 175 675 30 HOH HOH . E 5 HOH A 176 676 241 HOH HOH . E 5 HOH A 177 677 172 HOH HOH . E 5 HOH A 178 678 232 HOH HOH . E 5 HOH A 179 679 211 HOH HOH . E 5 HOH A 180 680 28 HOH HOH . E 5 HOH A 181 681 174 HOH HOH . E 5 HOH A 182 682 59 HOH HOH . E 5 HOH A 183 683 156 HOH HOH . E 5 HOH A 184 684 155 HOH HOH . E 5 HOH A 185 685 248 HOH HOH . E 5 HOH A 186 686 121 HOH HOH . E 5 HOH A 187 687 74 HOH HOH . E 5 HOH A 188 688 165 HOH HOH . E 5 HOH A 189 689 178 HOH HOH . E 5 HOH A 190 690 49 HOH HOH . E 5 HOH A 191 691 169 HOH HOH . E 5 HOH A 192 692 207 HOH HOH . E 5 HOH A 193 693 134 HOH HOH . E 5 HOH A 194 694 3 HOH HOH . E 5 HOH A 195 695 18 HOH HOH . E 5 HOH A 196 696 249 HOH HOH . E 5 HOH A 197 697 103 HOH HOH . E 5 HOH A 198 698 64 HOH HOH . E 5 HOH A 199 699 234 HOH HOH . E 5 HOH A 200 700 119 HOH HOH . E 5 HOH A 201 701 200 HOH HOH . E 5 HOH A 202 702 183 HOH HOH . E 5 HOH A 203 703 145 HOH HOH . E 5 HOH A 204 704 167 HOH HOH . E 5 HOH A 205 705 57 HOH HOH . E 5 HOH A 206 706 214 HOH HOH . E 5 HOH A 207 707 196 HOH HOH . E 5 HOH A 208 708 191 HOH HOH . E 5 HOH A 209 709 182 HOH HOH . E 5 HOH A 210 710 235 HOH HOH . E 5 HOH A 211 711 171 HOH HOH . E 5 HOH A 212 712 231 HOH HOH . E 5 HOH A 213 713 142 HOH HOH . E 5 HOH A 214 714 219 HOH HOH . E 5 HOH A 215 715 201 HOH HOH . E 5 HOH A 216 716 204 HOH HOH . E 5 HOH A 217 717 220 HOH HOH . E 5 HOH A 218 718 202 HOH HOH . E 5 HOH A 219 719 140 HOH HOH . E 5 HOH A 220 720 150 HOH HOH . E 5 HOH A 221 721 218 HOH HOH . E 5 HOH A 222 722 154 HOH HOH . E 5 HOH A 223 723 247 HOH HOH . E 5 HOH A 224 724 244 HOH HOH . E 5 HOH A 225 725 216 HOH HOH . E 5 HOH A 226 726 227 HOH HOH . E 5 HOH A 227 727 223 HOH HOH . E 5 HOH A 228 728 197 HOH HOH . E 5 HOH A 229 729 62 HOH HOH . E 5 HOH A 230 730 189 HOH HOH . E 5 HOH A 231 731 129 HOH HOH . E 5 HOH A 232 732 242 HOH HOH . E 5 HOH A 233 733 89 HOH HOH . E 5 HOH A 234 734 128 HOH HOH . E 5 HOH A 235 735 190 HOH HOH . E 5 HOH A 236 736 236 HOH HOH . E 5 HOH A 237 737 135 HOH HOH . E 5 HOH A 238 738 192 HOH HOH . E 5 HOH A 239 739 198 HOH HOH . E 5 HOH A 240 740 166 HOH HOH . E 5 HOH A 241 741 123 HOH HOH . E 5 HOH A 242 742 139 HOH HOH . E 5 HOH A 243 743 205 HOH HOH . E 5 HOH A 244 744 203 HOH HOH . E 5 HOH A 245 745 206 HOH HOH . E 5 HOH A 246 746 115 HOH HOH . E 5 HOH A 247 747 215 HOH HOH . E 5 HOH A 248 748 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PG0 . . . C 3 -6.768 -13.248 20.406 1 30.9 ? O2 PG0 402 A 1 HETATM 2 C C4 PG0 . . . C 3 -5.465 -13.221 19.855 1 33.92 ? C4 PG0 402 A 1 HETATM 3 C C3 PG0 . . . C 3 -4.942 -14.627 19.994 1 30.45 ? C3 PG0 402 A 1 HETATM 4 O O1 PG0 . . . C 3 -5.239 -15.285 18.772 1 29.09 ? O1 PG0 402 A 1 HETATM 5 C C2 PG0 . . . C 3 -4.308 -16.308 18.516 1 32.69 ? C2 PG0 402 A 1 HETATM 6 C C1 PG0 . . . C 3 -4.129 -16.197 17.028 1 31.28 ? C1 PG0 402 A 1 HETATM 7 O OTT PG0 . . . C 3 -2.98 -16.917 16.642 1 31.35 ? OTT PG0 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 204 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #