data_5C3F # _model_server_result.job_id t-3C1nOpG7bqP4eoFPR2Qw _model_server_result.datetime_utc '2024-11-26 06:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5C3F # _exptl.entry_id 5C3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C3F _cell.length_a 80.83 _cell.length_b 37.02 _cell.length_c 56.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 79 1_555 B N GLU 2 B GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 B C ALA 13 B ALA 91 1_555 B N NLE 14 B NLE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C NLE 14 B NLE 92 1_555 B N VAL 15 B VAL 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale4 B CE NLE 14 B NLE 92 1_555 B CE NLE 18 B NLE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale5 B C ASP 17 B ASP 95 1_555 B N NLE 18 B NLE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? covale ? covale6 B C NLE 18 B NLE 96 1_555 B N NLE 19 B NLE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.279 ? covale ? covale7 B C NLE 19 B NLE 97 1_555 B N ASP 20 B ASP 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 5C3F _atom_sites.fract_transf_matrix[1][1] 0.012372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 4 HOH A 1 501 36 HOH HOH . D 4 HOH A 2 502 184 HOH HOH . D 4 HOH A 3 503 162 HOH HOH . D 4 HOH A 4 504 180 HOH HOH . D 4 HOH A 5 505 103 HOH HOH . D 4 HOH A 6 506 158 HOH HOH . D 4 HOH A 7 507 182 HOH HOH . D 4 HOH A 8 508 125 HOH HOH . D 4 HOH A 9 509 19 HOH HOH . D 4 HOH A 10 510 59 HOH HOH . D 4 HOH A 11 511 112 HOH HOH . D 4 HOH A 12 512 111 HOH HOH . D 4 HOH A 13 513 140 HOH HOH . D 4 HOH A 14 514 138 HOH HOH . D 4 HOH A 15 515 3 HOH HOH . D 4 HOH A 16 516 20 HOH HOH . D 4 HOH A 17 517 113 HOH HOH . D 4 HOH A 18 518 116 HOH HOH . D 4 HOH A 19 519 60 HOH HOH . D 4 HOH A 20 520 22 HOH HOH . D 4 HOH A 21 521 48 HOH HOH . D 4 HOH A 22 522 145 HOH HOH . D 4 HOH A 23 523 70 HOH HOH . D 4 HOH A 24 524 41 HOH HOH . D 4 HOH A 25 525 63 HOH HOH . D 4 HOH A 26 526 175 HOH HOH . D 4 HOH A 27 527 40 HOH HOH . D 4 HOH A 28 528 13 HOH HOH . D 4 HOH A 29 529 27 HOH HOH . D 4 HOH A 30 530 88 HOH HOH . D 4 HOH A 31 531 2 HOH HOH . D 4 HOH A 32 532 51 HOH HOH . D 4 HOH A 33 533 43 HOH HOH . D 4 HOH A 34 534 120 HOH HOH . D 4 HOH A 35 535 102 HOH HOH . D 4 HOH A 36 536 50 HOH HOH . D 4 HOH A 37 537 85 HOH HOH . D 4 HOH A 38 538 1 HOH HOH . D 4 HOH A 39 539 73 HOH HOH . D 4 HOH A 40 540 53 HOH HOH . D 4 HOH A 41 541 5 HOH HOH . D 4 HOH A 42 542 49 HOH HOH . D 4 HOH A 43 543 90 HOH HOH . D 4 HOH A 44 544 16 HOH HOH . D 4 HOH A 45 545 35 HOH HOH . D 4 HOH A 46 546 69 HOH HOH . D 4 HOH A 47 547 96 HOH HOH . D 4 HOH A 48 548 185 HOH HOH . D 4 HOH A 49 549 7 HOH HOH . D 4 HOH A 50 550 62 HOH HOH . D 4 HOH A 51 551 21 HOH HOH . D 4 HOH A 52 552 12 HOH HOH . D 4 HOH A 53 553 57 HOH HOH . D 4 HOH A 54 554 56 HOH HOH . D 4 HOH A 55 555 32 HOH HOH . D 4 HOH A 56 556 110 HOH HOH . D 4 HOH A 57 557 174 HOH HOH . D 4 HOH A 58 558 6 HOH HOH . D 4 HOH A 59 559 119 HOH HOH . D 4 HOH A 60 560 81 HOH HOH . D 4 HOH A 61 561 30 HOH HOH . D 4 HOH A 62 562 84 HOH HOH . D 4 HOH A 63 563 8 HOH HOH . D 4 HOH A 64 564 71 HOH HOH . D 4 HOH A 65 565 55 HOH HOH . D 4 HOH A 66 566 177 HOH HOH . D 4 HOH A 67 567 170 HOH HOH . D 4 HOH A 68 568 155 HOH HOH . D 4 HOH A 69 569 143 HOH HOH . D 4 HOH A 70 570 67 HOH HOH . D 4 HOH A 71 571 86 HOH HOH . D 4 HOH A 72 572 15 HOH HOH . D 4 HOH A 73 573 104 HOH HOH . D 4 HOH A 74 574 156 HOH HOH . D 4 HOH A 75 575 68 HOH HOH . D 4 HOH A 76 576 26 HOH HOH . D 4 HOH A 77 577 131 HOH HOH . D 4 HOH A 78 578 154 HOH HOH . D 4 HOH A 79 579 25 HOH HOH . D 4 HOH A 80 580 34 HOH HOH . D 4 HOH A 81 581 47 HOH HOH . D 4 HOH A 82 582 44 HOH HOH . D 4 HOH A 83 583 10 HOH HOH . D 4 HOH A 84 584 100 HOH HOH . D 4 HOH A 85 585 28 HOH HOH . D 4 HOH A 86 586 139 HOH HOH . D 4 HOH A 87 587 58 HOH HOH . D 4 HOH A 88 588 42 HOH HOH . D 4 HOH A 89 589 54 HOH HOH . D 4 HOH A 90 590 65 HOH HOH . D 4 HOH A 91 591 18 HOH HOH . D 4 HOH A 92 592 14 HOH HOH . D 4 HOH A 93 593 98 HOH HOH . D 4 HOH A 94 594 151 HOH HOH . D 4 HOH A 95 595 39 HOH HOH . D 4 HOH A 96 596 147 HOH HOH . D 4 HOH A 97 597 128 HOH HOH . D 4 HOH A 98 598 178 HOH HOH . D 4 HOH A 99 599 169 HOH HOH . D 4 HOH A 100 600 127 HOH HOH . D 4 HOH A 101 601 17 HOH HOH . D 4 HOH A 102 602 91 HOH HOH . D 4 HOH A 103 603 144 HOH HOH . D 4 HOH A 104 604 52 HOH HOH . D 4 HOH A 105 605 107 HOH HOH . D 4 HOH A 106 606 78 HOH HOH . D 4 HOH A 107 607 33 HOH HOH . D 4 HOH A 108 608 89 HOH HOH . D 4 HOH A 109 609 9 HOH HOH . D 4 HOH A 110 610 4 HOH HOH . D 4 HOH A 111 611 176 HOH HOH . D 4 HOH A 112 612 129 HOH HOH . D 4 HOH A 113 613 97 HOH HOH . D 4 HOH A 114 614 31 HOH HOH . D 4 HOH A 115 615 108 HOH HOH . D 4 HOH A 116 616 64 HOH HOH . D 4 HOH A 117 617 187 HOH HOH . D 4 HOH A 118 618 117 HOH HOH . D 4 HOH A 119 619 24 HOH HOH . D 4 HOH A 120 620 153 HOH HOH . D 4 HOH A 121 621 29 HOH HOH . D 4 HOH A 122 622 45 HOH HOH . D 4 HOH A 123 623 168 HOH HOH . D 4 HOH A 124 624 11 HOH HOH . D 4 HOH A 125 625 142 HOH HOH . D 4 HOH A 126 626 146 HOH HOH . D 4 HOH A 127 627 23 HOH HOH . D 4 HOH A 128 628 152 HOH HOH . D 4 HOH A 129 629 133 HOH HOH . D 4 HOH A 130 630 163 HOH HOH . D 4 HOH A 131 631 132 HOH HOH . D 4 HOH A 132 632 190 HOH HOH . D 4 HOH A 133 633 118 HOH HOH . D 4 HOH A 134 634 115 HOH HOH . D 4 HOH A 135 635 130 HOH HOH . D 4 HOH A 136 636 181 HOH HOH . D 4 HOH A 137 637 161 HOH HOH . D 4 HOH A 138 638 61 HOH HOH . D 4 HOH A 139 639 148 HOH HOH . D 4 HOH A 140 640 122 HOH HOH . D 4 HOH A 141 641 173 HOH HOH . D 4 HOH A 142 642 183 HOH HOH . D 4 HOH A 143 643 134 HOH HOH . D 4 HOH A 144 644 123 HOH HOH . D 4 HOH A 145 645 37 HOH HOH . D 4 HOH A 146 646 164 HOH HOH . D 4 HOH A 147 647 94 HOH HOH . D 4 HOH A 148 648 87 HOH HOH . D 4 HOH A 149 649 186 HOH HOH . D 4 HOH A 150 650 172 HOH HOH . D 4 HOH A 151 651 159 HOH HOH . D 4 HOH A 152 652 157 HOH HOH . D 4 HOH A 153 653 83 HOH HOH . D 4 HOH A 154 654 160 HOH HOH . D 4 HOH A 155 655 171 HOH HOH . D 4 HOH A 156 656 167 HOH HOH . D 4 HOH A 157 657 189 HOH HOH . D 4 HOH A 158 658 109 HOH HOH . D 4 HOH A 159 659 188 HOH HOH . D 4 HOH A 160 660 92 HOH HOH . D 4 HOH A 161 661 150 HOH HOH . D 4 HOH A 162 662 80 HOH HOH . D 4 HOH A 163 663 74 HOH HOH . D 4 HOH A 164 664 93 HOH HOH . D 4 HOH A 165 665 75 HOH HOH . D 4 HOH A 166 666 121 HOH HOH . D 4 HOH A 167 667 165 HOH HOH . D 4 HOH A 168 668 79 HOH HOH . D 4 HOH A 169 669 76 HOH HOH . D 4 HOH A 170 670 105 HOH HOH . D 4 HOH A 171 671 101 HOH HOH . D 4 HOH A 172 672 149 HOH HOH . D 4 HOH A 173 673 72 HOH HOH . D 4 HOH A 174 674 77 HOH HOH . D 4 HOH A 175 675 82 HOH HOH . D 4 HOH A 176 676 166 HOH HOH . D 4 HOH A 177 677 179 HOH HOH . E 4 HOH B 1 201 66 HOH HOH . E 4 HOH B 2 202 106 HOH HOH . E 4 HOH B 3 203 114 HOH HOH . E 4 HOH B 4 204 135 HOH HOH . E 4 HOH B 5 205 136 HOH HOH . E 4 HOH B 6 206 126 HOH HOH . E 4 HOH B 7 207 137 HOH HOH . E 4 HOH B 8 208 95 HOH HOH . E 4 HOH B 9 209 38 HOH HOH . E 4 HOH B 10 210 46 HOH HOH . E 4 HOH B 11 211 124 HOH HOH . E 4 HOH B 12 212 141 HOH HOH . E 4 HOH B 13 213 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 64.939 20.98 28.389 1 25.35 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 63.648 20.409 28.425 1 31.18 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 65.078 22.005 29.506 1 24.7 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 65.003 21.344 30.753 1 24 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 66.414 22.724 29.372 1 24.98 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 66.385 23.922 30.11 1 21.59 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . C 3 65.101 21.463 27.426 1 30.43 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . C 3 65.69 20.2 28.51 1 30.43 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . C 3 63.541 19.799 27.665 1 37.41 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . C 3 64.272 22.734 29.42 1 29.64 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . C 3 65.735 20.698 30.825 1 28.8 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . C 3 66.61 22.943 28.322 1 29.97 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . C 3 67.215 22.084 29.741 1 29.97 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . C 3 65.732 24.535 29.712 1 25.91 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #