data_5C3M
#
_model_server_result.job_id            ldyBgRAkHT0pE9m8wwFj6Q 
_model_server_result.datetime_utc      '2025-01-02 21:28:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    5C3M 
#
_exptl.entry_id    5C3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.61 
_cell.angle_gamma         90 
_cell.entry_id            5C3M 
_cell.length_a            185.324 
_cell.length_b            83.198 
_cell.length_c            151.372 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1,2 
B,D,F,H,J,L 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -60.625843 0 138.70108 
3 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -185.324 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 202 A HIS 202 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 B NE2 HIS 202 B HIS 202 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 B OH TYR 316 B TYR 316 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc4 C NE2 HIS 202 C HIS 202 1_555 G MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
metalc ? metalc5 D NE2 HIS 202 D HIS 202 1_555 H MN MN . D MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C3M 
_atom_sites.fract_transf_matrix[1][1]    0.005396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002359 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MN A 1 501 501 MN MN . 
F 2 MN B 1 501 501 MN MN . 
G 2 MN C 1 501 501 MN MN . 
H 2 MN D 1 501 501 MN MN . 
I 3 HOH A 1 601 601 HOH HOH . 
I 3 HOH A 2 602 602 HOH HOH . 
I 3 HOH A 3 603 603 HOH HOH . 
I 3 HOH A 4 604 604 HOH HOH . 
I 3 HOH A 5 605 605 HOH HOH . 
I 3 HOH A 6 606 606 HOH HOH . 
I 3 HOH A 7 607 607 HOH HOH . 
I 3 HOH A 8 608 608 HOH HOH . 
I 3 HOH A 9 609 609 HOH HOH . 
I 3 HOH A 10 610 610 HOH HOH . 
I 3 HOH A 11 611 611 HOH HOH . 
I 3 HOH A 12 612 612 HOH HOH . 
I 3 HOH A 13 613 613 HOH HOH . 
I 3 HOH A 14 614 614 HOH HOH . 
I 3 HOH A 15 615 615 HOH HOH . 
I 3 HOH A 16 616 616 HOH HOH . 
I 3 HOH A 17 617 617 HOH HOH . 
I 3 HOH A 18 618 618 HOH HOH . 
I 3 HOH A 19 619 619 HOH HOH . 
I 3 HOH A 20 620 620 HOH HOH . 
I 3 HOH A 21 621 621 HOH HOH . 
J 3 HOH B 1 601 601 HOH HOH . 
J 3 HOH B 2 602 602 HOH HOH . 
J 3 HOH B 3 603 603 HOH HOH . 
J 3 HOH B 4 604 604 HOH HOH . 
J 3 HOH B 5 605 605 HOH HOH . 
J 3 HOH B 6 606 606 HOH HOH . 
J 3 HOH B 7 607 607 HOH HOH . 
J 3 HOH B 8 608 608 HOH HOH . 
J 3 HOH B 9 609 609 HOH HOH . 
J 3 HOH B 10 610 610 HOH HOH . 
J 3 HOH B 11 611 611 HOH HOH . 
J 3 HOH B 12 612 612 HOH HOH . 
J 3 HOH B 13 613 613 HOH HOH . 
J 3 HOH B 14 614 614 HOH HOH . 
J 3 HOH B 15 615 615 HOH HOH . 
J 3 HOH B 16 616 616 HOH HOH . 
J 3 HOH B 17 617 617 HOH HOH . 
J 3 HOH B 18 618 618 HOH HOH . 
J 3 HOH B 19 619 619 HOH HOH . 
J 3 HOH B 20 620 620 HOH HOH . 
J 3 HOH B 21 621 621 HOH HOH . 
J 3 HOH B 22 622 622 HOH HOH . 
J 3 HOH B 23 623 623 HOH HOH . 
J 3 HOH B 24 624 624 HOH HOH . 
J 3 HOH B 25 625 625 HOH HOH . 
J 3 HOH B 26 626 626 HOH HOH . 
J 3 HOH B 27 627 627 HOH HOH . 
K 3 HOH C 1 601 601 HOH HOH . 
K 3 HOH C 2 602 602 HOH HOH . 
K 3 HOH C 3 603 603 HOH HOH . 
K 3 HOH C 4 604 604 HOH HOH . 
K 3 HOH C 5 605 605 HOH HOH . 
K 3 HOH C 6 606 606 HOH HOH . 
K 3 HOH C 7 607 607 HOH HOH . 
K 3 HOH C 8 608 608 HOH HOH . 
K 3 HOH C 9 609 609 HOH HOH . 
K 3 HOH C 10 610 610 HOH HOH . 
K 3 HOH C 11 611 611 HOH HOH . 
K 3 HOH C 12 612 612 HOH HOH . 
K 3 HOH C 13 613 613 HOH HOH . 
K 3 HOH C 14 614 614 HOH HOH . 
K 3 HOH C 15 615 615 HOH HOH . 
K 3 HOH C 16 616 616 HOH HOH . 
K 3 HOH C 17 617 617 HOH HOH . 
K 3 HOH C 18 618 618 HOH HOH . 
K 3 HOH C 19 619 619 HOH HOH . 
L 3 HOH D 1 601 601 HOH HOH . 
L 3 HOH D 2 602 602 HOH HOH . 
L 3 HOH D 3 603 603 HOH HOH . 
L 3 HOH D 4 604 604 HOH HOH . 
L 3 HOH D 5 605 605 HOH HOH . 
L 3 HOH D 6 606 606 HOH HOH . 
L 3 HOH D 7 607 607 HOH HOH . 
L 3 HOH D 8 608 608 HOH HOH . 
L 3 HOH D 9 609 609 HOH HOH . 
L 3 HOH D 10 610 610 HOH HOH . 
L 3 HOH D 11 611 611 HOH HOH . 
L 3 HOH D 12 612 612 HOH HOH . 
L 3 HOH D 13 613 613 HOH HOH . 
L 3 HOH D 14 614 614 HOH HOH . 
L 3 HOH D 15 615 615 HOH HOH . 
L 3 HOH D 16 616 616 HOH HOH . 
L 3 HOH D 17 617 617 HOH HOH . 
L 3 HOH D 18 618 618 HOH HOH . 
L 3 HOH D 19 619 619 HOH HOH . 
L 3 HOH D 20 620 620 HOH HOH . 
L 3 HOH D 21 621 621 HOH HOH . 
L 3 HOH D 22 622 622 HOH HOH . 
L 3 HOH D 23 623 623 HOH HOH . 
L 3 HOH D 24 624 624 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -50.169 
_atom_site.Cartn_y               17.564 
_atom_site.Cartn_z               58.879 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        58.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           1 
#