data_5C3O # _model_server_result.job_id p1MmZahUOXSPA4f4G2YuTA _model_server_result.datetime_utc '2024-10-12 05:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5C3O # _exptl.entry_id 5C3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5C3O _cell.length_a 119.148 _cell.length_b 119.148 _cell.length_c 56.631 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 2 A SER 0 1_555 A N MSE 3 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 3 A MSE 1 1_555 A N GLU 4 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C THR 150 A THR 148 1_555 A N MSE 151 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 151 A MSE 149 1_555 A N ASN 152 A ASN 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C VAL 165 A VAL 163 1_555 A N MSE 166 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 166 A MSE 164 1_555 A N ARG 167 A ARG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C GLY 172 A GLY 170 1_555 A N MSE 173 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 173 A MSE 171 1_555 A N GLY 174 A GLY 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 218 A ASP 216 1_555 H CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 H CA CA . A CA 407 1_555 I O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 H CA CA . A CA 407 1_555 I O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 H CA CA . A CA 407 1_555 I O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5C3O _atom_sites.fract_transf_matrix[1][1] 0.008393 _atom_sites.fract_transf_matrix[1][2] 0.004846 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 2 EDO A 1 403 3 EDO EDO . E 2 EDO A 1 404 6 EDO EDO . F 2 EDO A 1 405 7 EDO EDO . G 2 EDO A 1 406 8 EDO EDO . H 3 CA A 1 407 1 CA CA . I 4 HOH A 1 501 7 HOH HOH . I 4 HOH A 2 502 13 HOH HOH . I 4 HOH A 3 503 22 HOH HOH . I 4 HOH A 4 504 90 HOH HOH . I 4 HOH A 5 505 25 HOH HOH . I 4 HOH A 6 506 89 HOH HOH . I 4 HOH A 7 507 54 HOH HOH . I 4 HOH A 8 508 8 HOH HOH . I 4 HOH A 9 509 30 HOH HOH . I 4 HOH A 10 510 3 HOH HOH . I 4 HOH A 11 511 70 HOH HOH . I 4 HOH A 12 512 36 HOH HOH . I 4 HOH A 13 513 2 HOH HOH . I 4 HOH A 14 514 37 HOH HOH . I 4 HOH A 15 515 10 HOH HOH . I 4 HOH A 16 516 53 HOH HOH . I 4 HOH A 17 517 1 HOH HOH . I 4 HOH A 18 518 27 HOH HOH . I 4 HOH A 19 519 19 HOH HOH . I 4 HOH A 20 520 24 HOH HOH . I 4 HOH A 21 521 33 HOH HOH . I 4 HOH A 22 522 39 HOH HOH . I 4 HOH A 23 523 32 HOH HOH . I 4 HOH A 24 524 26 HOH HOH . I 4 HOH A 25 525 72 HOH HOH . I 4 HOH A 26 526 108 HOH HOH . I 4 HOH A 27 527 64 HOH HOH . I 4 HOH A 28 528 47 HOH HOH . I 4 HOH A 29 529 94 HOH HOH . I 4 HOH A 30 530 18 HOH HOH . I 4 HOH A 31 531 74 HOH HOH . I 4 HOH A 32 532 91 HOH HOH . I 4 HOH A 33 533 12 HOH HOH . I 4 HOH A 34 534 101 HOH HOH . I 4 HOH A 35 535 41 HOH HOH . I 4 HOH A 36 536 20 HOH HOH . I 4 HOH A 37 537 95 HOH HOH . I 4 HOH A 38 538 44 HOH HOH . I 4 HOH A 39 539 58 HOH HOH . I 4 HOH A 40 540 38 HOH HOH . I 4 HOH A 41 541 5 HOH HOH . I 4 HOH A 42 542 6 HOH HOH . I 4 HOH A 43 543 106 HOH HOH . I 4 HOH A 44 544 11 HOH HOH . I 4 HOH A 45 545 17 HOH HOH . I 4 HOH A 46 546 68 HOH HOH . I 4 HOH A 47 547 92 HOH HOH . I 4 HOH A 48 548 50 HOH HOH . I 4 HOH A 49 549 98 HOH HOH . I 4 HOH A 50 550 63 HOH HOH . I 4 HOH A 51 551 4 HOH HOH . I 4 HOH A 52 552 78 HOH HOH . I 4 HOH A 53 553 60 HOH HOH . I 4 HOH A 54 554 14 HOH HOH . I 4 HOH A 55 555 15 HOH HOH . I 4 HOH A 56 556 29 HOH HOH . I 4 HOH A 57 557 45 HOH HOH . I 4 HOH A 58 558 23 HOH HOH . I 4 HOH A 59 559 102 HOH HOH . I 4 HOH A 60 560 104 HOH HOH . I 4 HOH A 61 561 76 HOH HOH . I 4 HOH A 62 562 34 HOH HOH . I 4 HOH A 63 563 55 HOH HOH . I 4 HOH A 64 564 43 HOH HOH . I 4 HOH A 65 565 80 HOH HOH . I 4 HOH A 66 566 28 HOH HOH . I 4 HOH A 67 567 87 HOH HOH . I 4 HOH A 68 568 42 HOH HOH . I 4 HOH A 69 569 81 HOH HOH . I 4 HOH A 70 570 79 HOH HOH . I 4 HOH A 71 571 52 HOH HOH . I 4 HOH A 72 572 88 HOH HOH . I 4 HOH A 73 573 16 HOH HOH . I 4 HOH A 74 574 9 HOH HOH . I 4 HOH A 75 575 71 HOH HOH . I 4 HOH A 76 576 84 HOH HOH . I 4 HOH A 77 577 49 HOH HOH . I 4 HOH A 78 578 103 HOH HOH . I 4 HOH A 79 579 109 HOH HOH . I 4 HOH A 80 580 67 HOH HOH . I 4 HOH A 81 581 86 HOH HOH . I 4 HOH A 82 582 83 HOH HOH . I 4 HOH A 83 583 69 HOH HOH . I 4 HOH A 84 584 21 HOH HOH . I 4 HOH A 85 585 59 HOH HOH . I 4 HOH A 86 586 77 HOH HOH . I 4 HOH A 87 587 61 HOH HOH . I 4 HOH A 88 588 85 HOH HOH . I 4 HOH A 89 589 56 HOH HOH . I 4 HOH A 90 590 51 HOH HOH . I 4 HOH A 91 591 97 HOH HOH . I 4 HOH A 92 592 93 HOH HOH . I 4 HOH A 93 593 96 HOH HOH . I 4 HOH A 94 594 65 HOH HOH . I 4 HOH A 95 595 46 HOH HOH . I 4 HOH A 96 596 48 HOH HOH . I 4 HOH A 97 597 73 HOH HOH . I 4 HOH A 98 598 66 HOH HOH . I 4 HOH A 99 599 100 HOH HOH . I 4 HOH A 100 600 31 HOH HOH . I 4 HOH A 101 601 57 HOH HOH . I 4 HOH A 102 602 105 HOH HOH . I 4 HOH A 103 603 75 HOH HOH . I 4 HOH A 104 604 107 HOH HOH . I 4 HOH A 105 605 35 HOH HOH . I 4 HOH A 106 606 62 HOH HOH . I 4 HOH A 107 607 99 HOH HOH . I 4 HOH A 108 608 40 HOH HOH . I 4 HOH A 109 609 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 22.499 45.276 47.586 1 86.63 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . G 2 22.699 43.863 47.45 1 86.91 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . G 2 21.868 45.848 46.318 1 86.95 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . G 2 22.301 45.139 45.148 1 84.89 ? O2 EDO 406 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #