data_5C3X # _model_server_result.job_id hesLlVd4VhvxufFVZwbL8g _model_server_result.datetime_utc '2024-10-11 10:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5C3X # _exptl.entry_id 5C3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.03 _cell.angle_gamma 90 _cell.entry_id 5C3X _cell.length_a 31.126 _cell.length_b 60.173 _cell.length_c 38.047 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc4 A OE2 GLU 43 A GLU 43 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc5 B CA CA . A CA 201 1_555 C O6P THP . A THP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc6 B CA CA . A CA 201 1_555 D O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc7 B CA CA . A CA 201 1_555 D O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5C3X _atom_sites.fract_transf_matrix[1][1] 0.032127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002825 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 1 CA CA . C 3 THP A 1 202 1 THP THP . D 4 HOH A 1 301 92 HOH HOH . D 4 HOH A 2 302 55 HOH HOH . D 4 HOH A 3 303 79 HOH HOH . D 4 HOH A 4 304 10 HOH HOH . D 4 HOH A 5 305 37 HOH HOH . D 4 HOH A 6 306 70 HOH HOH . D 4 HOH A 7 307 49 HOH HOH . D 4 HOH A 8 308 35 HOH HOH . D 4 HOH A 9 309 25 HOH HOH . D 4 HOH A 10 310 67 HOH HOH . D 4 HOH A 11 311 1 HOH HOH . D 4 HOH A 12 312 11 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 61 HOH HOH . D 4 HOH A 15 315 22 HOH HOH . D 4 HOH A 16 316 30 HOH HOH . D 4 HOH A 17 317 42 HOH HOH . D 4 HOH A 18 318 8 HOH HOH . D 4 HOH A 19 319 89 HOH HOH . D 4 HOH A 20 320 12 HOH HOH . D 4 HOH A 21 321 48 HOH HOH . D 4 HOH A 22 322 20 HOH HOH . D 4 HOH A 23 323 66 HOH HOH . D 4 HOH A 24 324 62 HOH HOH . D 4 HOH A 25 325 53 HOH HOH . D 4 HOH A 26 326 4 HOH HOH . D 4 HOH A 27 327 39 HOH HOH . D 4 HOH A 28 328 81 HOH HOH . D 4 HOH A 29 329 24 HOH HOH . D 4 HOH A 30 330 2 HOH HOH . D 4 HOH A 31 331 36 HOH HOH . D 4 HOH A 32 332 78 HOH HOH . D 4 HOH A 33 333 85 HOH HOH . D 4 HOH A 34 334 87 HOH HOH . D 4 HOH A 35 335 72 HOH HOH . D 4 HOH A 36 336 90 HOH HOH . D 4 HOH A 37 337 6 HOH HOH . D 4 HOH A 38 338 43 HOH HOH . D 4 HOH A 39 339 59 HOH HOH . D 4 HOH A 40 340 45 HOH HOH . D 4 HOH A 41 341 50 HOH HOH . D 4 HOH A 42 342 57 HOH HOH . D 4 HOH A 43 343 38 HOH HOH . D 4 HOH A 44 344 64 HOH HOH . D 4 HOH A 45 345 3 HOH HOH . D 4 HOH A 46 346 75 HOH HOH . D 4 HOH A 47 347 46 HOH HOH . D 4 HOH A 48 348 19 HOH HOH . D 4 HOH A 49 349 60 HOH HOH . D 4 HOH A 50 350 76 HOH HOH . D 4 HOH A 51 351 18 HOH HOH . D 4 HOH A 52 352 33 HOH HOH . D 4 HOH A 53 353 32 HOH HOH . D 4 HOH A 54 354 21 HOH HOH . D 4 HOH A 55 355 84 HOH HOH . D 4 HOH A 56 356 9 HOH HOH . D 4 HOH A 57 357 58 HOH HOH . D 4 HOH A 58 358 5 HOH HOH . D 4 HOH A 59 359 65 HOH HOH . D 4 HOH A 60 360 7 HOH HOH . D 4 HOH A 61 361 91 HOH HOH . D 4 HOH A 62 362 14 HOH HOH . D 4 HOH A 63 363 16 HOH HOH . D 4 HOH A 64 364 26 HOH HOH . D 4 HOH A 65 365 88 HOH HOH . D 4 HOH A 66 366 27 HOH HOH . D 4 HOH A 67 367 71 HOH HOH . D 4 HOH A 68 368 63 HOH HOH . D 4 HOH A 69 369 28 HOH HOH . D 4 HOH A 70 370 52 HOH HOH . D 4 HOH A 71 371 44 HOH HOH . D 4 HOH A 72 372 73 HOH HOH . D 4 HOH A 73 373 29 HOH HOH . D 4 HOH A 74 374 74 HOH HOH . D 4 HOH A 75 375 86 HOH HOH . D 4 HOH A 76 376 56 HOH HOH . D 4 HOH A 77 377 47 HOH HOH . D 4 HOH A 78 378 15 HOH HOH . D 4 HOH A 79 379 80 HOH HOH . D 4 HOH A 80 380 34 HOH HOH . D 4 HOH A 81 381 17 HOH HOH . D 4 HOH A 82 382 23 HOH HOH . D 4 HOH A 83 383 54 HOH HOH . D 4 HOH A 84 384 83 HOH HOH . D 4 HOH A 85 385 82 HOH HOH . D 4 HOH A 86 386 77 HOH HOH . D 4 HOH A 87 387 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.347 _atom_site.Cartn_y 11.249 _atom_site.Cartn_z 46.274 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #