data_5C42 # _model_server_result.job_id DuhGdhLbX3hp-esZvbzPPA _model_server_result.datetime_utc '2025-01-11 03:48:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5C42 # _exptl.entry_id 5C42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.376 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}indolizine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 5C42 _cell.length_a 224.198 _cell.length_b 69.008 _cell.length_c 104.283 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 N4 O4' _chem_comp.formula_weight 388.376 _chem_comp.id 29T _chem_comp.mon_nstd_flag . _chem_comp.name 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}indolizine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C00 29T doub 1 n y C01 C02 29T sing 2 n y C00 C05 29T sing 3 n y C02 C03 29T doub 4 n y O0Q C0K 29T doub 5 n n C0D O0B 29T sing 6 n n C0D C0E 29T sing 7 n n C05 O0B 29T sing 8 n n C05 C04 29T doub 9 n y C03 C04 29T sing 10 n y C0K N0M 29T sing 11 n n C0K N0H 29T sing 12 n n C0E N0H 29T sing 13 n n C04 O0A 29T sing 14 n n N0M C0N 29T sing 15 n n N0H C0P 29T sing 16 n n O0A C0C 29T sing 17 n n C0N O0S 29T doub 18 n n C0N C0O 29T sing 19 n n C0P C0O 29T doub 20 n n C0Z C0C 29T doub 21 n y C0Z C0Y 29T sing 22 n y C0C C0V 29T sing 23 n y C0Y C0X 29T doub 24 n y C0V N0W 29T sing 25 n y C0V C10 29T doub 26 n y C0X N0W 29T sing 27 n y N0W C11 29T sing 28 n y C10 C14 29T sing 29 n y C11 C14 29T doub 30 n y C14 C16 29T sing 31 n n C16 N19 29T trip 32 n n C10 H1 29T sing 33 n n C11 H2 29T sing 34 n n C00 H3 29T sing 35 n n C01 H4 29T sing 36 n n C02 H5 29T sing 37 n n C03 H6 29T sing 38 n n C0X H7 29T sing 39 n n C0Y H8 29T sing 40 n n C0Z H9 29T sing 41 n n C0D H10 29T sing 42 n n C0D H11 29T sing 43 n n C0E H12 29T sing 44 n n C0E H13 29T sing 45 n n N0M H14 29T sing 46 n n C0O H15 29T sing 47 n n C0P H16 29T sing 48 n n # _atom_sites.entry_id 5C42 _atom_sites.fract_transf_matrix[1][1] 0.00446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00132 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 29T _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 178 _pdbx_nonpoly_scheme.pdb_mon_id 29T _pdbx_nonpoly_scheme.auth_mon_id 555 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 29T . . . C 3 497.025 -24.473 26.014 1 124.01 ? C10 29T 601 A 1 HETATM 2 C C11 29T . . . C 3 496.382 -22.803 27.404 1 132.32 ? C11 29T 601 A 1 HETATM 3 C C14 29T . . . C 3 497.066 -23.986 27.35 1 129.69 ? C14 29T 601 A 1 HETATM 4 C C16 29T . . . C 3 497.759 -24.7 28.404 1 131.97 ? C16 29T 601 A 1 HETATM 5 C C00 29T . . . C 3 494.586 -24.643 19.738 1 116 ? C00 29T 601 A 1 HETATM 6 C C01 29T . . . C 3 495.574 -24.059 18.914 1 133.94 ? C01 29T 601 A 1 HETATM 7 C C02 29T . . . C 3 496.779 -23.591 19.479 1 134.43 ? C02 29T 601 A 1 HETATM 8 C C03 29T . . . C 3 496.999 -23.706 20.865 1 130.89 ? C03 29T 601 A 1 HETATM 9 C C04 29T . . . C 3 496.011 -24.292 21.698 1 126.09 ? C04 29T 601 A 1 HETATM 10 C C05 29T . . . C 3 494.789 -24.768 21.146 1 112.52 ? C05 29T 601 A 1 HETATM 11 O O0A 29T . . . C 3 496.242 -24.396 23.051 1 128.37 ? O0A 29T 601 A 1 HETATM 12 C C0C 29T . . . C 3 495.858 -23.388 23.908 1 122.45 ? C0C 29T 601 A 1 HETATM 13 C C0V 29T . . . C 3 496.281 -23.531 25.264 1 121.11 ? C0V 29T 601 A 1 HETATM 14 N N0W 29T . . . C 3 495.896 -22.513 26.135 1 132.6 ? N0W 29T 601 A 1 HETATM 15 C C0X 29T . . . C 3 495.154 -21.4 25.796 1 137.22 ? C0X 29T 601 A 1 HETATM 16 C C0Y 29T . . . C 3 494.735 -21.225 24.526 1 136.97 ? C0Y 29T 601 A 1 HETATM 17 C C0Z 29T . . . C 3 495.088 -22.233 23.547 1 130.72 ? C0Z 29T 601 A 1 HETATM 18 N N19 29T . . . C 3 498.306 -25.276 29.243 1 134.4 ? N19 29T 601 A 1 HETATM 19 O O0B 29T . . . C 3 493.885 -25.325 22.032 1 116.98 ? O0B 29T 601 A 1 HETATM 20 C C0D 29T . . . C 3 492.551 -25.612 21.67 1 136.58 ? C0D 29T 601 A 1 HETATM 21 C C0E 29T . . . C 3 491.936 -26.488 22.737 1 145.57 ? C0E 29T 601 A 1 HETATM 22 N N0H 29T . . . C 3 492.658 -27.752 23.035 1 151.78 ? N0H 29T 601 A 1 HETATM 23 C C0K 29T . . . C 3 492.693 -28.87 22.22 1 143.9 ? C0K 29T 601 A 1 HETATM 24 N N0M 29T . . . C 3 493.418 -29.925 22.677 1 150.36 ? N0M 29T 601 A 1 HETATM 25 C C0N 29T . . . C 3 494.118 -30.025 23.835 1 151.33 ? C0N 29T 601 A 1 HETATM 26 C C0O 29T . . . C 3 494.071 -28.832 24.681 1 150.32 ? C0O 29T 601 A 1 HETATM 27 C C0P 29T . . . C 3 493.36 -27.748 24.274 1 153.72 ? C0P 29T 601 A 1 HETATM 28 O O0Q 29T . . . C 3 492.12 -28.963 21.138 1 139.41 ? O0Q 29T 601 A 1 HETATM 29 O O0S 29T . . . C 3 494.735 -31.047 24.122 1 150.79 ? O0S 29T 601 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #