data_5C48
#
_model_server_result.job_id            jH-yEGKNLjZNJoV7SaAQgw 
_model_server_result.datetime_utc      '2024-11-13 03:04:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c48 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5C48 
#
_exptl.entry_id    5C48 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C48 
_cell.length_a            52.58 
_cell.length_b            149.19 
_cell.length_c            79.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C48 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -52.58 0 39.66 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 154 A ASP 211 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc2 A OD1 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 A OD2 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc4 B MN MN . A MN 401 1_555 D O11 URM . A URM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc5 B MN MN . A MN 401 1_555 D O23 URM . A URM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc6 B MN MN . A MN 401 1_555 E O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C48 
_atom_sites.fract_transf_matrix[1][1]    0.019019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 401 2 MN MN . 
C 3 DA8 A 1 402 1 DA8 DAA . 
D 4 URM A 1 403 1 URM URM . 
E 5 HOH A 1 501 183 HOH HOH . 
E 5 HOH A 2 502 186 HOH HOH . 
E 5 HOH A 3 503 195 HOH HOH . 
E 5 HOH A 4 504 169 HOH HOH . 
E 5 HOH A 5 505 41 HOH HOH . 
E 5 HOH A 6 506 85 HOH HOH . 
E 5 HOH A 7 507 164 HOH HOH . 
E 5 HOH A 8 508 152 HOH HOH . 
E 5 HOH A 9 509 80 HOH HOH . 
E 5 HOH A 10 510 136 HOH HOH . 
E 5 HOH A 11 511 106 HOH HOH . 
E 5 HOH A 12 512 107 HOH HOH . 
E 5 HOH A 13 513 140 HOH HOH . 
E 5 HOH A 14 514 115 HOH HOH . 
E 5 HOH A 15 515 93 HOH HOH . 
E 5 HOH A 16 516 179 HOH HOH . 
E 5 HOH A 17 517 21 HOH HOH . 
E 5 HOH A 18 518 109 HOH HOH . 
E 5 HOH A 19 519 212 HOH HOH . 
E 5 HOH A 20 520 86 HOH HOH . 
E 5 HOH A 21 521 145 HOH HOH . 
E 5 HOH A 22 522 114 HOH HOH . 
E 5 HOH A 23 523 83 HOH HOH . 
E 5 HOH A 24 524 79 HOH HOH . 
E 5 HOH A 25 525 155 HOH HOH . 
E 5 HOH A 26 526 171 HOH HOH . 
E 5 HOH A 27 527 147 HOH HOH . 
E 5 HOH A 28 528 129 HOH HOH . 
E 5 HOH A 29 529 25 HOH HOH . 
E 5 HOH A 30 530 82 HOH HOH . 
E 5 HOH A 31 531 48 HOH HOH . 
E 5 HOH A 32 532 166 HOH HOH . 
E 5 HOH A 33 533 15 HOH HOH . 
E 5 HOH A 34 534 36 HOH HOH . 
E 5 HOH A 35 535 30 HOH HOH . 
E 5 HOH A 36 536 148 HOH HOH . 
E 5 HOH A 37 537 141 HOH HOH . 
E 5 HOH A 38 538 143 HOH HOH . 
E 5 HOH A 39 539 5 HOH HOH . 
E 5 HOH A 40 540 57 HOH HOH . 
E 5 HOH A 41 541 132 HOH HOH . 
E 5 HOH A 42 542 18 HOH HOH . 
E 5 HOH A 43 543 68 HOH HOH . 
E 5 HOH A 44 544 44 HOH HOH . 
E 5 HOH A 45 545 160 HOH HOH . 
E 5 HOH A 46 546 174 HOH HOH . 
E 5 HOH A 47 547 70 HOH HOH . 
E 5 HOH A 48 548 65 HOH HOH . 
E 5 HOH A 49 549 149 HOH HOH . 
E 5 HOH A 50 550 124 HOH HOH . 
E 5 HOH A 51 551 123 HOH HOH . 
E 5 HOH A 52 552 119 HOH HOH . 
E 5 HOH A 53 553 38 HOH HOH . 
E 5 HOH A 54 554 28 HOH HOH . 
E 5 HOH A 55 555 50 HOH HOH . 
E 5 HOH A 56 556 215 HOH HOH . 
E 5 HOH A 57 557 99 HOH HOH . 
E 5 HOH A 58 558 52 HOH HOH . 
E 5 HOH A 59 559 144 HOH HOH . 
E 5 HOH A 60 560 91 HOH HOH . 
E 5 HOH A 61 561 177 HOH HOH . 
E 5 HOH A 62 562 96 HOH HOH . 
E 5 HOH A 63 563 188 HOH HOH . 
E 5 HOH A 64 564 33 HOH HOH . 
E 5 HOH A 65 565 45 HOH HOH . 
E 5 HOH A 66 566 71 HOH HOH . 
E 5 HOH A 67 567 173 HOH HOH . 
E 5 HOH A 68 568 139 HOH HOH . 
E 5 HOH A 69 569 20 HOH HOH . 
E 5 HOH A 70 570 110 HOH HOH . 
E 5 HOH A 71 571 40 HOH HOH . 
E 5 HOH A 72 572 23 HOH HOH . 
E 5 HOH A 73 573 111 HOH HOH . 
E 5 HOH A 74 574 226 HOH HOH . 
E 5 HOH A 75 575 14 HOH HOH . 
E 5 HOH A 76 576 46 HOH HOH . 
E 5 HOH A 77 577 61 HOH HOH . 
E 5 HOH A 78 578 22 HOH HOH . 
E 5 HOH A 79 579 117 HOH HOH . 
E 5 HOH A 80 580 163 HOH HOH . 
E 5 HOH A 81 581 9 HOH HOH . 
E 5 HOH A 82 582 90 HOH HOH . 
E 5 HOH A 83 583 8 HOH HOH . 
E 5 HOH A 84 584 24 HOH HOH . 
E 5 HOH A 85 585 63 HOH HOH . 
E 5 HOH A 86 586 4 HOH HOH . 
E 5 HOH A 87 587 55 HOH HOH . 
E 5 HOH A 88 588 6 HOH HOH . 
E 5 HOH A 89 589 100 HOH HOH . 
E 5 HOH A 90 590 172 HOH HOH . 
E 5 HOH A 91 591 67 HOH HOH . 
E 5 HOH A 92 592 184 HOH HOH . 
E 5 HOH A 93 593 206 HOH HOH . 
E 5 HOH A 94 594 77 HOH HOH . 
E 5 HOH A 95 595 17 HOH HOH . 
E 5 HOH A 96 596 227 HOH HOH . 
E 5 HOH A 97 597 12 HOH HOH . 
E 5 HOH A 98 598 178 HOH HOH . 
E 5 HOH A 99 599 54 HOH HOH . 
E 5 HOH A 100 600 39 HOH HOH . 
E 5 HOH A 101 601 135 HOH HOH . 
E 5 HOH A 102 602 37 HOH HOH . 
E 5 HOH A 103 603 26 HOH HOH . 
E 5 HOH A 104 604 10 HOH HOH . 
E 5 HOH A 105 605 66 HOH HOH . 
E 5 HOH A 106 606 59 HOH HOH . 
E 5 HOH A 107 607 31 HOH HOH . 
E 5 HOH A 108 608 130 HOH HOH . 
E 5 HOH A 109 609 131 HOH HOH . 
E 5 HOH A 110 610 102 HOH HOH . 
E 5 HOH A 111 611 142 HOH HOH . 
E 5 HOH A 112 612 16 HOH HOH . 
E 5 HOH A 113 613 127 HOH HOH . 
E 5 HOH A 114 614 42 HOH HOH . 
E 5 HOH A 115 615 92 HOH HOH . 
E 5 HOH A 116 616 72 HOH HOH . 
E 5 HOH A 117 617 122 HOH HOH . 
E 5 HOH A 118 618 133 HOH HOH . 
E 5 HOH A 119 619 73 HOH HOH . 
E 5 HOH A 120 620 35 HOH HOH . 
E 5 HOH A 121 621 154 HOH HOH . 
E 5 HOH A 122 622 180 HOH HOH . 
E 5 HOH A 123 623 193 HOH HOH . 
E 5 HOH A 124 624 60 HOH HOH . 
E 5 HOH A 125 625 98 HOH HOH . 
E 5 HOH A 126 626 165 HOH HOH . 
E 5 HOH A 127 627 209 HOH HOH . 
E 5 HOH A 128 628 43 HOH HOH . 
E 5 HOH A 129 629 95 HOH HOH . 
E 5 HOH A 130 630 3 HOH HOH . 
E 5 HOH A 131 631 78 HOH HOH . 
E 5 HOH A 132 632 214 HOH HOH . 
E 5 HOH A 133 633 105 HOH HOH . 
E 5 HOH A 134 634 89 HOH HOH . 
E 5 HOH A 135 635 200 HOH HOH . 
E 5 HOH A 136 636 13 HOH HOH . 
E 5 HOH A 137 637 75 HOH HOH . 
E 5 HOH A 138 638 116 HOH HOH . 
E 5 HOH A 139 639 97 HOH HOH . 
E 5 HOH A 140 640 216 HOH HOH . 
E 5 HOH A 141 641 62 HOH HOH . 
E 5 HOH A 142 642 69 HOH HOH . 
E 5 HOH A 143 643 76 HOH HOH . 
E 5 HOH A 144 644 167 HOH HOH . 
E 5 HOH A 145 645 11 HOH HOH . 
E 5 HOH A 146 646 47 HOH HOH . 
E 5 HOH A 147 647 64 HOH HOH . 
E 5 HOH A 148 648 56 HOH HOH . 
E 5 HOH A 149 649 7 HOH HOH . 
E 5 HOH A 150 650 84 HOH HOH . 
E 5 HOH A 151 651 137 HOH HOH . 
E 5 HOH A 152 652 220 HOH HOH . 
E 5 HOH A 153 653 101 HOH HOH . 
E 5 HOH A 154 654 138 HOH HOH . 
E 5 HOH A 155 655 219 HOH HOH . 
E 5 HOH A 156 656 112 HOH HOH . 
E 5 HOH A 157 657 34 HOH HOH . 
E 5 HOH A 158 658 128 HOH HOH . 
E 5 HOH A 159 659 2 HOH HOH . 
E 5 HOH A 160 660 113 HOH HOH . 
E 5 HOH A 161 661 51 HOH HOH . 
E 5 HOH A 162 662 32 HOH HOH . 
E 5 HOH A 163 663 94 HOH HOH . 
E 5 HOH A 164 664 103 HOH HOH . 
E 5 HOH A 165 665 208 HOH HOH . 
E 5 HOH A 166 666 1 HOH HOH . 
E 5 HOH A 167 667 125 HOH HOH . 
E 5 HOH A 168 668 202 HOH HOH . 
E 5 HOH A 169 669 205 HOH HOH . 
E 5 HOH A 170 670 181 HOH HOH . 
E 5 HOH A 171 671 134 HOH HOH . 
E 5 HOH A 172 672 185 HOH HOH . 
E 5 HOH A 173 673 29 HOH HOH . 
E 5 HOH A 174 674 157 HOH HOH . 
E 5 HOH A 175 675 53 HOH HOH . 
E 5 HOH A 176 676 182 HOH HOH . 
E 5 HOH A 177 677 121 HOH HOH . 
E 5 HOH A 178 678 151 HOH HOH . 
E 5 HOH A 179 679 196 HOH HOH . 
E 5 HOH A 180 680 27 HOH HOH . 
E 5 HOH A 181 681 221 HOH HOH . 
E 5 HOH A 182 682 74 HOH HOH . 
E 5 HOH A 183 683 222 HOH HOH . 
E 5 HOH A 184 684 223 HOH HOH . 
E 5 HOH A 185 685 168 HOH HOH . 
E 5 HOH A 186 686 211 HOH HOH . 
E 5 HOH A 187 687 176 HOH HOH . 
E 5 HOH A 188 688 162 HOH HOH . 
E 5 HOH A 189 689 49 HOH HOH . 
E 5 HOH A 190 690 198 HOH HOH . 
E 5 HOH A 191 691 213 HOH HOH . 
E 5 HOH A 192 692 210 HOH HOH . 
E 5 HOH A 193 693 218 HOH HOH . 
E 5 HOH A 194 694 207 HOH HOH . 
E 5 HOH A 195 695 191 HOH HOH . 
E 5 HOH A 196 696 19 HOH HOH . 
E 5 HOH A 197 697 170 HOH HOH . 
E 5 HOH A 198 698 81 HOH HOH . 
E 5 HOH A 199 699 118 HOH HOH . 
E 5 HOH A 200 700 197 HOH HOH . 
E 5 HOH A 201 701 199 HOH HOH . 
E 5 HOH A 202 702 190 HOH HOH . 
E 5 HOH A 203 703 150 HOH HOH . 
E 5 HOH A 204 704 224 HOH HOH . 
E 5 HOH A 205 705 58 HOH HOH . 
E 5 HOH A 206 706 120 HOH HOH . 
E 5 HOH A 207 707 153 HOH HOH . 
E 5 HOH A 208 708 175 HOH HOH . 
E 5 HOH A 209 709 126 HOH HOH . 
E 5 HOH A 210 710 87 HOH HOH . 
E 5 HOH A 211 711 108 HOH HOH . 
E 5 HOH A 212 712 104 HOH HOH . 
E 5 HOH A 213 713 146 HOH HOH . 
E 5 HOH A 214 714 225 HOH HOH . 
E 5 HOH A 215 715 88 HOH HOH . 
E 5 HOH A 216 716 217 HOH HOH . 
E 5 HOH A 217 717 192 HOH HOH . 
E 5 HOH A 218 718 194 HOH HOH . 
E 5 HOH A 219 719 156 HOH HOH . 
E 5 HOH A 220 720 201 HOH HOH . 
E 5 HOH A 221 721 159 HOH HOH . 
E 5 HOH A 222 722 203 HOH HOH . 
E 5 HOH A 223 723 158 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -11.407 
_atom_site.Cartn_y               -16.878 
_atom_site.Cartn_z               -4.085 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#