data_5C4B # _model_server_result.job_id rWkEzmHXwJpfUpWmyKR0hw _model_server_result.datetime_utc '2024-12-03 19:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5C4B # _exptl.entry_id 5C4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C4B _cell.length_a 52.59 _cell.length_b 149.28 _cell.length_c 79.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 39.695 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OD2 ASP 156 A ASP 213 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 B MN MN . A MN 401 1_555 E O2B UPG . A UPG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 B MN MN . A MN 401 1_555 E O2A UPG . A UPG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc5 B MN MN . A MN 401 1_555 F O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 B MN MN . A MN 401 1_555 F O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 305 n n C1 C2 PGE sing 306 n n C1 H1 PGE sing 307 n n C1 H12 PGE sing 308 n n O1 HO1 PGE sing 309 n n C2 O2 PGE sing 310 n n C2 H2 PGE sing 311 n n C2 H22 PGE sing 312 n n O2 C3 PGE sing 313 n n C3 C4 PGE sing 314 n n C3 H3 PGE sing 315 n n C3 H32 PGE sing 316 n n C4 O3 PGE sing 317 n n C4 H4 PGE sing 318 n n C4 H42 PGE sing 319 n n O4 C6 PGE sing 320 n n O4 HO4 PGE sing 321 n n C6 C5 PGE sing 322 n n C6 H6 PGE sing 323 n n C6 H62 PGE sing 324 n n C5 O3 PGE sing 325 n n C5 H5 PGE sing 326 n n C5 H52 PGE sing 327 n n # _atom_sites.entry_id 5C4B _atom_sites.fract_transf_matrix[1][1] 0.019015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 503 MN MN . C 3 DA8 A 1 402 1 DA8 DAA . D 4 PGE A 1 403 1 PGE PGE . E 5 UPG A 1 404 1 UPG UPG . F 6 HOH A 1 501 219 HOH HOH . F 6 HOH A 2 502 19 HOH HOH . F 6 HOH A 3 503 83 HOH HOH . F 6 HOH A 4 504 44 HOH HOH . F 6 HOH A 5 505 215 HOH HOH . F 6 HOH A 6 506 233 HOH HOH . F 6 HOH A 7 507 151 HOH HOH . F 6 HOH A 8 508 160 HOH HOH . F 6 HOH A 9 509 145 HOH HOH . F 6 HOH A 10 510 170 HOH HOH . F 6 HOH A 11 511 72 HOH HOH . F 6 HOH A 12 512 177 HOH HOH . F 6 HOH A 13 513 101 HOH HOH . F 6 HOH A 14 514 106 HOH HOH . F 6 HOH A 15 515 126 HOH HOH . F 6 HOH A 16 516 123 HOH HOH . F 6 HOH A 17 517 59 HOH HOH . F 6 HOH A 18 518 212 HOH HOH . F 6 HOH A 19 519 142 HOH HOH . F 6 HOH A 20 520 156 HOH HOH . F 6 HOH A 21 521 141 HOH HOH . F 6 HOH A 22 522 228 HOH HOH . F 6 HOH A 23 523 116 HOH HOH . F 6 HOH A 24 524 24 HOH HOH . F 6 HOH A 25 525 207 HOH HOH . F 6 HOH A 26 526 30 HOH HOH . F 6 HOH A 27 527 87 HOH HOH . F 6 HOH A 28 528 110 HOH HOH . F 6 HOH A 29 529 230 HOH HOH . F 6 HOH A 30 530 10 HOH HOH . F 6 HOH A 31 531 40 HOH HOH . F 6 HOH A 32 532 204 HOH HOH . F 6 HOH A 33 533 125 HOH HOH . F 6 HOH A 34 534 73 HOH HOH . F 6 HOH A 35 535 102 HOH HOH . F 6 HOH A 36 536 25 HOH HOH . F 6 HOH A 37 537 49 HOH HOH . F 6 HOH A 38 538 64 HOH HOH . F 6 HOH A 39 539 180 HOH HOH . F 6 HOH A 40 540 17 HOH HOH . F 6 HOH A 41 541 128 HOH HOH . F 6 HOH A 42 542 220 HOH HOH . F 6 HOH A 43 543 62 HOH HOH . F 6 HOH A 44 544 41 HOH HOH . F 6 HOH A 45 545 15 HOH HOH . F 6 HOH A 46 546 143 HOH HOH . F 6 HOH A 47 547 119 HOH HOH . F 6 HOH A 48 548 184 HOH HOH . F 6 HOH A 49 549 65 HOH HOH . F 6 HOH A 50 550 12 HOH HOH . F 6 HOH A 51 551 22 HOH HOH . F 6 HOH A 52 552 6 HOH HOH . F 6 HOH A 53 553 179 HOH HOH . F 6 HOH A 54 554 166 HOH HOH . F 6 HOH A 55 555 92 HOH HOH . F 6 HOH A 56 556 191 HOH HOH . F 6 HOH A 57 557 11 HOH HOH . F 6 HOH A 58 558 176 HOH HOH . F 6 HOH A 59 559 168 HOH HOH . F 6 HOH A 60 560 131 HOH HOH . F 6 HOH A 61 561 52 HOH HOH . F 6 HOH A 62 562 3 HOH HOH . F 6 HOH A 63 563 77 HOH HOH . F 6 HOH A 64 564 82 HOH HOH . F 6 HOH A 65 565 84 HOH HOH . F 6 HOH A 66 566 226 HOH HOH . F 6 HOH A 67 567 69 HOH HOH . F 6 HOH A 68 568 16 HOH HOH . F 6 HOH A 69 569 86 HOH HOH . F 6 HOH A 70 570 152 HOH HOH . F 6 HOH A 71 571 75 HOH HOH . F 6 HOH A 72 572 146 HOH HOH . F 6 HOH A 73 573 90 HOH HOH . F 6 HOH A 74 574 208 HOH HOH . F 6 HOH A 75 575 27 HOH HOH . F 6 HOH A 76 576 218 HOH HOH . F 6 HOH A 77 577 88 HOH HOH . F 6 HOH A 78 578 43 HOH HOH . F 6 HOH A 79 579 18 HOH HOH . F 6 HOH A 80 580 172 HOH HOH . F 6 HOH A 81 581 91 HOH HOH . F 6 HOH A 82 582 76 HOH HOH . F 6 HOH A 83 583 127 HOH HOH . F 6 HOH A 84 584 95 HOH HOH . F 6 HOH A 85 585 23 HOH HOH . F 6 HOH A 86 586 121 HOH HOH . F 6 HOH A 87 587 7 HOH HOH . F 6 HOH A 88 588 63 HOH HOH . F 6 HOH A 89 589 55 HOH HOH . F 6 HOH A 90 590 13 HOH HOH . F 6 HOH A 91 591 154 HOH HOH . F 6 HOH A 92 592 188 HOH HOH . F 6 HOH A 93 593 32 HOH HOH . F 6 HOH A 94 594 4 HOH HOH . F 6 HOH A 95 595 98 HOH HOH . F 6 HOH A 96 596 187 HOH HOH . F 6 HOH A 97 597 235 HOH HOH . F 6 HOH A 98 598 9 HOH HOH . F 6 HOH A 99 599 31 HOH HOH . F 6 HOH A 100 600 221 HOH HOH . F 6 HOH A 101 601 227 HOH HOH . F 6 HOH A 102 602 169 HOH HOH . F 6 HOH A 103 603 47 HOH HOH . F 6 HOH A 104 604 60 HOH HOH . F 6 HOH A 105 605 171 HOH HOH . F 6 HOH A 106 606 14 HOH HOH . F 6 HOH A 107 607 211 HOH HOH . F 6 HOH A 108 608 89 HOH HOH . F 6 HOH A 109 609 103 HOH HOH . F 6 HOH A 110 610 35 HOH HOH . F 6 HOH A 111 611 104 HOH HOH . F 6 HOH A 112 612 164 HOH HOH . F 6 HOH A 113 613 109 HOH HOH . F 6 HOH A 114 614 54 HOH HOH . F 6 HOH A 115 615 118 HOH HOH . F 6 HOH A 116 616 130 HOH HOH . F 6 HOH A 117 617 45 HOH HOH . F 6 HOH A 118 618 71 HOH HOH . F 6 HOH A 119 619 231 HOH HOH . F 6 HOH A 120 620 80 HOH HOH . F 6 HOH A 121 621 108 HOH HOH . F 6 HOH A 122 622 139 HOH HOH . F 6 HOH A 123 623 1 HOH HOH . F 6 HOH A 124 624 5 HOH HOH . F 6 HOH A 125 625 33 HOH HOH . F 6 HOH A 126 626 56 HOH HOH . F 6 HOH A 127 627 186 HOH HOH . F 6 HOH A 128 628 100 HOH HOH . F 6 HOH A 129 629 111 HOH HOH . F 6 HOH A 130 630 48 HOH HOH . F 6 HOH A 131 631 53 HOH HOH . F 6 HOH A 132 632 223 HOH HOH . F 6 HOH A 133 633 99 HOH HOH . F 6 HOH A 134 634 115 HOH HOH . F 6 HOH A 135 635 29 HOH HOH . F 6 HOH A 136 636 124 HOH HOH . F 6 HOH A 137 637 57 HOH HOH . F 6 HOH A 138 638 94 HOH HOH . F 6 HOH A 139 639 93 HOH HOH . F 6 HOH A 140 640 178 HOH HOH . F 6 HOH A 141 641 147 HOH HOH . F 6 HOH A 142 642 61 HOH HOH . F 6 HOH A 143 643 37 HOH HOH . F 6 HOH A 144 644 85 HOH HOH . F 6 HOH A 145 645 229 HOH HOH . F 6 HOH A 146 646 97 HOH HOH . F 6 HOH A 147 647 74 HOH HOH . F 6 HOH A 148 648 2 HOH HOH . F 6 HOH A 149 649 182 HOH HOH . F 6 HOH A 150 650 26 HOH HOH . F 6 HOH A 151 651 42 HOH HOH . F 6 HOH A 152 652 38 HOH HOH . F 6 HOH A 153 653 28 HOH HOH . F 6 HOH A 154 654 224 HOH HOH . F 6 HOH A 155 655 21 HOH HOH . F 6 HOH A 156 656 158 HOH HOH . F 6 HOH A 157 657 134 HOH HOH . F 6 HOH A 158 658 79 HOH HOH . F 6 HOH A 159 659 214 HOH HOH . F 6 HOH A 160 660 165 HOH HOH . F 6 HOH A 161 661 34 HOH HOH . F 6 HOH A 162 662 58 HOH HOH . F 6 HOH A 163 663 113 HOH HOH . F 6 HOH A 164 664 153 HOH HOH . F 6 HOH A 165 665 20 HOH HOH . F 6 HOH A 166 666 114 HOH HOH . F 6 HOH A 167 667 107 HOH HOH . F 6 HOH A 168 668 132 HOH HOH . F 6 HOH A 169 669 117 HOH HOH . F 6 HOH A 170 670 66 HOH HOH . F 6 HOH A 171 671 140 HOH HOH . F 6 HOH A 172 672 175 HOH HOH . F 6 HOH A 173 673 149 HOH HOH . F 6 HOH A 174 674 8 HOH HOH . F 6 HOH A 175 675 203 HOH HOH . F 6 HOH A 176 676 163 HOH HOH . F 6 HOH A 177 677 161 HOH HOH . F 6 HOH A 178 678 181 HOH HOH . F 6 HOH A 179 679 51 HOH HOH . F 6 HOH A 180 680 78 HOH HOH . F 6 HOH A 181 681 173 HOH HOH . F 6 HOH A 182 682 162 HOH HOH . F 6 HOH A 183 683 155 HOH HOH . F 6 HOH A 184 684 190 HOH HOH . F 6 HOH A 185 685 234 HOH HOH . F 6 HOH A 186 686 36 HOH HOH . F 6 HOH A 187 687 198 HOH HOH . F 6 HOH A 188 688 159 HOH HOH . F 6 HOH A 189 689 200 HOH HOH . F 6 HOH A 190 690 197 HOH HOH . F 6 HOH A 191 691 70 HOH HOH . F 6 HOH A 192 692 137 HOH HOH . F 6 HOH A 193 693 50 HOH HOH . F 6 HOH A 194 694 193 HOH HOH . F 6 HOH A 195 695 157 HOH HOH . F 6 HOH A 196 696 96 HOH HOH . F 6 HOH A 197 697 122 HOH HOH . F 6 HOH A 198 698 217 HOH HOH . F 6 HOH A 199 699 195 HOH HOH . F 6 HOH A 200 700 202 HOH HOH . F 6 HOH A 201 701 232 HOH HOH . F 6 HOH A 202 702 213 HOH HOH . F 6 HOH A 203 703 192 HOH HOH . F 6 HOH A 204 704 185 HOH HOH . F 6 HOH A 205 705 81 HOH HOH . F 6 HOH A 206 706 209 HOH HOH . F 6 HOH A 207 707 210 HOH HOH . F 6 HOH A 208 708 216 HOH HOH . F 6 HOH A 209 709 39 HOH HOH . F 6 HOH A 210 710 167 HOH HOH . F 6 HOH A 211 711 222 HOH HOH . F 6 HOH A 212 712 112 HOH HOH . F 6 HOH A 213 713 148 HOH HOH . F 6 HOH A 214 714 144 HOH HOH . F 6 HOH A 215 715 194 HOH HOH . F 6 HOH A 216 716 67 HOH HOH . F 6 HOH A 217 717 46 HOH HOH . F 6 HOH A 218 718 225 HOH HOH . F 6 HOH A 219 719 199 HOH HOH . F 6 HOH A 220 720 138 HOH HOH . F 6 HOH A 221 721 133 HOH HOH . F 6 HOH A 222 722 120 HOH HOH . F 6 HOH A 223 723 129 HOH HOH . F 6 HOH A 224 724 196 HOH HOH . F 6 HOH A 225 725 150 HOH HOH . F 6 HOH A 226 726 201 HOH HOH . F 6 HOH A 227 727 183 HOH HOH . F 6 HOH A 228 728 135 HOH HOH . F 6 HOH A 229 729 105 HOH HOH . F 6 HOH A 230 730 206 HOH HOH . F 6 HOH A 231 731 205 HOH HOH . F 6 HOH A 232 732 68 HOH HOH . F 6 HOH A 233 733 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 20.103 -14.171 20.68 1 33.73 ? C1 PGE 403 A 1 HETATM 2 O O1 PGE . . . D 4 19.448 -13.009 20.209 1 32.96 ? O1 PGE 403 A 1 HETATM 3 C C2 PGE . . . D 4 21.339 -14.345 19.834 1 33.45 ? C2 PGE 403 A 1 HETATM 4 O O2 PGE . . . D 4 21.032 -15.367 18.893 1 33.19 ? O2 PGE 403 A 1 HETATM 5 C C3 PGE . . . D 4 21.878 -15.394 17.778 1 35.6 ? C3 PGE 403 A 1 HETATM 6 C C4 PGE . . . D 4 22.668 -16.67 17.831 1 34.94 ? C4 PGE 403 A 1 HETATM 7 O O3 PGE . . . D 4 23.036 -16.91 16.499 1 32.54 ? O3 PGE 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #