data_5C4L # _model_server_result.job_id FRNACI1egIpIENLa5DfmLA _model_server_result.datetime_utc '2024-10-10 16:30:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5C4L # _exptl.entry_id 5C4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.172 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.18 _cell.angle_gamma 90 _cell.entry_id 5C4L _cell.length_a 74.22 _cell.length_b 65.04 _cell.length_c 78.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 N2 O2' _chem_comp.formula_weight 144.172 _chem_comp.id 4XR _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N61 C61 4XR sing 1 n n O51 C51 4XR sing 2 n n O51 C11 4XR sing 3 n n C31 C41 4XR sing 4 n n C31 C21 4XR sing 5 n n C51 C41 4XR doub 6 n n C51 C61 4XR sing 7 n n O11 C11 4XR sing 8 n n C11 C21 4XR sing 9 n n N21 C21 4XR sing 10 n n O11 H1 4XR sing 11 n n C11 H2 4XR sing 12 n n C21 H3 4XR sing 13 n n N21 H4 4XR sing 14 n n N21 H5 4XR sing 15 n n C31 H7 4XR sing 16 n n C31 H8 4XR sing 17 n n C41 H9 4XR sing 18 n n C61 H10 4XR sing 19 n n C61 H11 4XR sing 20 n n N61 H12 4XR sing 21 n n N61 H13 4XR sing 22 n n # _atom_sites.entry_id 5C4L _atom_sites.fract_transf_matrix[1][1] 0.013473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000278 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4XR A 1 401 2 4XR SIT . D 3 SIS B 1 401 1 SIS SIS . E 4 HOH A 1 501 35 HOH HOH . E 4 HOH A 2 502 48 HOH HOH . E 4 HOH A 3 503 28 HOH HOH . E 4 HOH A 4 504 10 HOH HOH . E 4 HOH A 5 505 42 HOH HOH . E 4 HOH A 6 506 13 HOH HOH . E 4 HOH A 7 507 40 HOH HOH . E 4 HOH A 8 508 36 HOH HOH . E 4 HOH A 9 509 43 HOH HOH . E 4 HOH A 10 510 5 HOH HOH . E 4 HOH A 11 511 33 HOH HOH . E 4 HOH A 12 512 31 HOH HOH . E 4 HOH A 13 513 30 HOH HOH . E 4 HOH A 14 514 9 HOH HOH . E 4 HOH A 15 515 1 HOH HOH . E 4 HOH A 16 516 55 HOH HOH . E 4 HOH A 17 517 49 HOH HOH . E 4 HOH A 18 518 16 HOH HOH . E 4 HOH A 19 519 18 HOH HOH . E 4 HOH A 20 520 41 HOH HOH . E 4 HOH A 21 521 39 HOH HOH . E 4 HOH A 22 522 32 HOH HOH . E 4 HOH A 23 523 14 HOH HOH . E 4 HOH A 24 524 11 HOH HOH . E 4 HOH A 25 525 15 HOH HOH . E 4 HOH A 26 526 54 HOH HOH . E 4 HOH A 27 527 8 HOH HOH . E 4 HOH A 28 528 7 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 17 HOH HOH . E 4 HOH A 31 531 44 HOH HOH . E 4 HOH A 32 532 6 HOH HOH . F 4 HOH B 1 501 38 HOH HOH . F 4 HOH B 2 502 23 HOH HOH . F 4 HOH B 3 503 24 HOH HOH . F 4 HOH B 4 504 19 HOH HOH . F 4 HOH B 5 505 46 HOH HOH . F 4 HOH B 6 506 21 HOH HOH . F 4 HOH B 7 507 26 HOH HOH . F 4 HOH B 8 508 4 HOH HOH . F 4 HOH B 9 509 45 HOH HOH . F 4 HOH B 10 510 34 HOH HOH . F 4 HOH B 11 511 50 HOH HOH . F 4 HOH B 12 512 25 HOH HOH . F 4 HOH B 13 513 47 HOH HOH . F 4 HOH B 14 514 20 HOH HOH . F 4 HOH B 15 515 53 HOH HOH . F 4 HOH B 16 516 27 HOH HOH . F 4 HOH B 17 517 37 HOH HOH . F 4 HOH B 18 518 51 HOH HOH . F 4 HOH B 19 519 22 HOH HOH . F 4 HOH B 20 520 3 HOH HOH . F 4 HOH B 21 521 52 HOH HOH . F 4 HOH B 22 522 2 HOH HOH . F 4 HOH B 23 523 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 4XR . . . C 2 27.885 6.969 79.911 1 78.93 ? O11 4XR 401 A 1 HETATM 2 C C11 4XR . . . C 2 26.559 6.391 80.217 1 88.87 ? C11 4XR 401 A 1 HETATM 3 O O51 4XR . . . C 2 25.543 6.829 79.239 1 83.97 ? O51 4XR 401 A 1 HETATM 4 C C21 4XR . . . C 2 26.642 4.823 80.392 1 90.01 ? C21 4XR 401 A 1 HETATM 5 N N21 4XR . . . C 2 28.038 4.313 80.265 1 89.97 ? N21 4XR 401 A 1 HETATM 6 C C31 4XR . . . C 2 25.687 4.086 79.464 1 91.51 ? C31 4XR 401 A 1 HETATM 7 C C41 4XR . . . C 2 24.472 4.751 79.663 1 93.02 ? C41 4XR 401 A 1 HETATM 8 C C51 4XR . . . C 2 24.426 6.141 79.519 1 88.28 ? C51 4XR 401 A 1 HETATM 9 C C61 4XR . . . C 2 23.311 6.904 79.688 1 86.43 ? C61 4XR 401 A 1 HETATM 10 N N61 4XR . . . C 2 22.293 6.397 78.764 1 80 ? N61 4XR 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #