data_5C4U # _model_server_result.job_id 6To_vUq3gCUSQrdaxplmFQ _model_server_result.datetime_utc '2024-11-04 23:12:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5C4U # _exptl.entry_id 5C4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5C4U _cell.length_a 108.08 _cell.length_b 108.08 _cell.length_c 106.55 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 175 n n C1 C2 GOL sing 176 n n C1 H11 GOL sing 177 n n C1 H12 GOL sing 178 n n O1 HO1 GOL sing 179 n n C2 O2 GOL sing 180 n n C2 C3 GOL sing 181 n n C2 H2 GOL sing 182 n n O2 HO2 GOL sing 183 n n C3 O3 GOL sing 184 n n C3 H31 GOL sing 185 n n C3 H32 GOL sing 186 n n O3 HO3 GOL sing 187 n n # _atom_sites.entry_id 5C4U _atom_sites.fract_transf_matrix[1][1] 0.009252 _atom_sites.fract_transf_matrix[1][2] 0.005342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4Y7 A 1 601 1 4Y7 367 . C 3 GOL A 1 602 1 GOL GOL . D 3 GOL A 1 603 2 GOL GOL . E 3 GOL A 1 604 3 GOL GOL . F 4 HOH A 1 701 18 HOH HOH . F 4 HOH A 2 702 13 HOH HOH . F 4 HOH A 3 703 20 HOH HOH . F 4 HOH A 4 704 4 HOH HOH . F 4 HOH A 5 705 1 HOH HOH . F 4 HOH A 6 706 9 HOH HOH . F 4 HOH A 7 707 23 HOH HOH . F 4 HOH A 8 708 2 HOH HOH . F 4 HOH A 9 709 5 HOH HOH . F 4 HOH A 10 710 8 HOH HOH . F 4 HOH A 11 711 16 HOH HOH . F 4 HOH A 12 712 11 HOH HOH . F 4 HOH A 13 713 12 HOH HOH . F 4 HOH A 14 714 19 HOH HOH . F 4 HOH A 15 715 15 HOH HOH . F 4 HOH A 16 716 3 HOH HOH . F 4 HOH A 17 717 14 HOH HOH . F 4 HOH A 18 718 17 HOH HOH . F 4 HOH A 19 719 10 HOH HOH . F 4 HOH A 20 720 7 HOH HOH . F 4 HOH A 21 721 21 HOH HOH . F 4 HOH A 22 722 22 HOH HOH . F 4 HOH A 23 723 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -35.833 13.536 25.748 1 72.4 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 3 -37.116 13.005 26.098 1 70.2 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 3 -35.363 13.089 24.379 1 73.69 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 3 -34.9 11.738 24.452 1 76.7 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 3 -34.245 13.967 23.859 1 73.38 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 3 -33.542 13.353 22.773 1 71.73 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #