data_5C4V
#
_model_server_result.job_id            FpzT-OQKoadNZuJ4jw0nOQ 
_model_server_result.datetime_utc      '2024-10-28 02:29:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c4v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    5C4V 
#
_exptl.entry_id    5C4V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.72 
_cell.angle_gamma         90 
_cell.entry_id            5C4V 
_cell.length_a            213.54 
_cell.length_b            122.83 
_cell.length_c            51.57 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C4V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,I,J,M,P 1 1 
B,E,K,N,Q 2 1 
C,F,L,O,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 55 B CYS 291 1_555 D SG CYS 58 B CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc1 D SG CYS 58 B CYS 294 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc2 D NE2 HIS 70 B HIS 306 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc3 D NE2 HIS 72 B HIS 308 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 E SG CYS 55 D CYS 291 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc5 E SG CYS 58 D CYS 294 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc6 E NE2 HIS 70 D HIS 306 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc7 E NE2 HIS 72 D HIS 308 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc8 F SG CYS 55 F CYS 291 1_555 L ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc9 F SG CYS 58 F CYS 294 1_555 L ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc10 F NE2 HIS 70 F HIS 306 1_555 L ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5C4V 
_atom_sites.fract_transf_matrix[1][1]    0.004683 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000059 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 GOL A 1 601 1 GOL GOL . 
H 4 ZN B 1 401 3 ZN ZN . 
I 5 NI B 1 402 1 NI NI . 
J 5 NI B 1 403 2 NI NI . 
K 4 ZN D 1 401 1 ZN ZN . 
L 4 ZN F 1 401 2 ZN ZN . 
M 6 HOH A 1 701 98 HOH HOH . 
M 6 HOH A 2 702 142 HOH HOH . 
M 6 HOH A 3 703 123 HOH HOH . 
M 6 HOH A 4 704 49 HOH HOH . 
M 6 HOH A 5 705 170 HOH HOH . 
M 6 HOH A 6 706 37 HOH HOH . 
M 6 HOH A 7 707 99 HOH HOH . 
M 6 HOH A 8 708 144 HOH HOH . 
M 6 HOH A 9 709 173 HOH HOH . 
M 6 HOH A 10 710 168 HOH HOH . 
M 6 HOH A 11 711 28 HOH HOH . 
M 6 HOH A 12 712 143 HOH HOH . 
M 6 HOH A 13 713 31 HOH HOH . 
M 6 HOH A 14 714 82 HOH HOH . 
M 6 HOH A 15 715 42 HOH HOH . 
M 6 HOH A 16 716 157 HOH HOH . 
M 6 HOH A 17 717 184 HOH HOH . 
M 6 HOH A 18 718 106 HOH HOH . 
M 6 HOH A 19 719 125 HOH HOH . 
M 6 HOH A 20 720 190 HOH HOH . 
M 6 HOH A 21 721 107 HOH HOH . 
M 6 HOH A 22 722 159 HOH HOH . 
M 6 HOH A 23 723 153 HOH HOH . 
M 6 HOH A 24 724 9 HOH HOH . 
M 6 HOH A 25 725 36 HOH HOH . 
M 6 HOH A 26 726 111 HOH HOH . 
M 6 HOH A 27 727 34 HOH HOH . 
M 6 HOH A 28 728 41 HOH HOH . 
M 6 HOH A 29 729 12 HOH HOH . 
M 6 HOH A 30 730 29 HOH HOH . 
M 6 HOH A 31 731 176 HOH HOH . 
M 6 HOH A 32 732 189 HOH HOH . 
M 6 HOH A 33 733 38 HOH HOH . 
M 6 HOH A 34 734 152 HOH HOH . 
M 6 HOH A 35 735 124 HOH HOH . 
M 6 HOH A 36 736 80 HOH HOH . 
M 6 HOH A 37 737 185 HOH HOH . 
M 6 HOH A 38 738 39 HOH HOH . 
M 6 HOH A 39 739 172 HOH HOH . 
M 6 HOH A 40 740 191 HOH HOH . 
M 6 HOH A 41 741 122 HOH HOH . 
N 6 HOH C 1 601 112 HOH HOH . 
N 6 HOH C 2 602 53 HOH HOH . 
N 6 HOH C 3 603 138 HOH HOH . 
N 6 HOH C 4 604 178 HOH HOH . 
N 6 HOH C 5 605 55 HOH HOH . 
N 6 HOH C 6 606 51 HOH HOH . 
N 6 HOH C 7 607 174 HOH HOH . 
N 6 HOH C 8 608 18 HOH HOH . 
N 6 HOH C 9 609 161 HOH HOH . 
N 6 HOH C 10 610 140 HOH HOH . 
N 6 HOH C 11 611 165 HOH HOH . 
N 6 HOH C 12 612 89 HOH HOH . 
N 6 HOH C 13 613 137 HOH HOH . 
N 6 HOH C 14 614 46 HOH HOH . 
N 6 HOH C 15 615 121 HOH HOH . 
N 6 HOH C 16 616 83 HOH HOH . 
N 6 HOH C 17 617 43 HOH HOH . 
N 6 HOH C 18 618 48 HOH HOH . 
N 6 HOH C 19 619 166 HOH HOH . 
N 6 HOH C 20 620 154 HOH HOH . 
N 6 HOH C 21 621 87 HOH HOH . 
N 6 HOH C 22 622 127 HOH HOH . 
N 6 HOH C 23 623 109 HOH HOH . 
N 6 HOH C 24 624 151 HOH HOH . 
N 6 HOH C 25 625 16 HOH HOH . 
N 6 HOH C 26 626 50 HOH HOH . 
N 6 HOH C 27 627 17 HOH HOH . 
N 6 HOH C 28 628 160 HOH HOH . 
N 6 HOH C 29 629 162 HOH HOH . 
N 6 HOH C 30 630 44 HOH HOH . 
N 6 HOH C 31 631 54 HOH HOH . 
N 6 HOH C 32 632 52 HOH HOH . 
O 6 HOH E 1 601 63 HOH HOH . 
O 6 HOH E 2 602 61 HOH HOH . 
O 6 HOH E 3 603 119 HOH HOH . 
O 6 HOH E 4 604 188 HOH HOH . 
O 6 HOH E 5 605 57 HOH HOH . 
O 6 HOH E 6 606 20 HOH HOH . 
O 6 HOH E 7 607 115 HOH HOH . 
O 6 HOH E 8 608 19 HOH HOH . 
O 6 HOH E 9 609 66 HOH HOH . 
O 6 HOH E 10 610 136 HOH HOH . 
O 6 HOH E 11 611 171 HOH HOH . 
O 6 HOH E 12 612 25 HOH HOH . 
O 6 HOH E 13 613 2 HOH HOH . 
O 6 HOH E 14 614 10 HOH HOH . 
O 6 HOH E 15 615 58 HOH HOH . 
O 6 HOH E 16 616 177 HOH HOH . 
O 6 HOH E 17 617 158 HOH HOH . 
O 6 HOH E 18 618 56 HOH HOH . 
O 6 HOH E 19 619 155 HOH HOH . 
O 6 HOH E 20 620 67 HOH HOH . 
O 6 HOH E 21 621 90 HOH HOH . 
O 6 HOH E 22 622 91 HOH HOH . 
O 6 HOH E 23 623 133 HOH HOH . 
O 6 HOH E 24 624 88 HOH HOH . 
O 6 HOH E 25 625 64 HOH HOH . 
O 6 HOH E 26 626 35 HOH HOH . 
O 6 HOH E 27 627 181 HOH HOH . 
O 6 HOH E 28 628 187 HOH HOH . 
O 6 HOH E 29 629 117 HOH HOH . 
O 6 HOH E 30 630 175 HOH HOH . 
O 6 HOH E 31 631 116 HOH HOH . 
O 6 HOH E 32 632 147 HOH HOH . 
O 6 HOH E 33 633 93 HOH HOH . 
O 6 HOH E 34 634 186 HOH HOH . 
O 6 HOH E 35 635 4 HOH HOH . 
O 6 HOH E 36 636 59 HOH HOH . 
O 6 HOH E 37 637 69 HOH HOH . 
O 6 HOH E 38 638 113 HOH HOH . 
O 6 HOH E 39 639 148 HOH HOH . 
P 6 HOH B 1 501 40 HOH HOH . 
P 6 HOH B 2 502 182 HOH HOH . 
P 6 HOH B 3 503 129 HOH HOH . 
P 6 HOH B 4 504 97 HOH HOH . 
P 6 HOH B 5 505 163 HOH HOH . 
P 6 HOH B 6 506 81 HOH HOH . 
P 6 HOH B 7 507 179 HOH HOH . 
P 6 HOH B 8 508 128 HOH HOH . 
P 6 HOH B 9 509 27 HOH HOH . 
P 6 HOH B 10 510 96 HOH HOH . 
Q 6 HOH D 1 501 183 HOH HOH . 
Q 6 HOH D 2 502 76 HOH HOH . 
Q 6 HOH D 3 503 150 HOH HOH . 
Q 6 HOH D 4 504 100 HOH HOH . 
R 6 HOH F 1 501 180 HOH HOH . 
R 6 HOH F 2 502 130 HOH HOH . 
R 6 HOH F 3 503 23 HOH HOH . 
R 6 HOH F 4 504 126 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               74.218 
_atom_site.Cartn_y               -73.088 
_atom_site.Cartn_z               24.151 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        86.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#