data_5C50
#
_model_server_result.job_id            VORd1dm9LK4ymddRT-JoBw 
_model_server_result.datetime_utc      '2024-11-04 22:52:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5C50 
#
_exptl.entry_id    5C50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.54 
_cell.angle_gamma         90 
_cell.entry_id            5C50 
_cell.length_a            67.722 
_cell.length_b            64.447 
_cell.length_c            94.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     5C50 
_atom_sites.fract_transf_matrix[1][1]    0.014766 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001954 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BEN A 1 201 1 BEN BEN . 
D 3 BEN A 1 202 3 BEN BEN . 
E 3 BEN A 1 203 4 BEN BEN . 
F 3 BEN B 1 301 2 BEN BEN . 
G 3 BEN B 1 302 5 BEN BEN . 
H 4 HOH A 1 301 139 HOH HOH . 
H 4 HOH A 2 302 74 HOH HOH . 
H 4 HOH A 3 303 91 HOH HOH . 
H 4 HOH A 4 304 209 HOH HOH . 
H 4 HOH A 5 305 8 HOH HOH . 
H 4 HOH A 6 306 155 HOH HOH . 
H 4 HOH A 7 307 30 HOH HOH . 
H 4 HOH A 8 308 13 HOH HOH . 
H 4 HOH A 9 309 31 HOH HOH . 
H 4 HOH A 10 310 136 HOH HOH . 
H 4 HOH A 11 311 72 HOH HOH . 
H 4 HOH A 12 312 176 HOH HOH . 
H 4 HOH A 13 313 148 HOH HOH . 
H 4 HOH A 14 314 124 HOH HOH . 
H 4 HOH A 15 315 208 HOH HOH . 
H 4 HOH A 16 316 132 HOH HOH . 
H 4 HOH A 17 317 163 HOH HOH . 
H 4 HOH A 18 318 89 HOH HOH . 
H 4 HOH A 19 319 213 HOH HOH . 
H 4 HOH A 20 320 125 HOH HOH . 
H 4 HOH A 21 321 59 HOH HOH . 
H 4 HOH A 22 322 12 HOH HOH . 
H 4 HOH A 23 323 202 HOH HOH . 
H 4 HOH A 24 324 92 HOH HOH . 
H 4 HOH A 25 325 142 HOH HOH . 
H 4 HOH A 26 326 122 HOH HOH . 
H 4 HOH A 27 327 133 HOH HOH . 
H 4 HOH A 28 328 76 HOH HOH . 
H 4 HOH A 29 329 186 HOH HOH . 
H 4 HOH A 30 330 16 HOH HOH . 
H 4 HOH A 31 331 83 HOH HOH . 
H 4 HOH A 32 332 221 HOH HOH . 
H 4 HOH A 33 333 117 HOH HOH . 
H 4 HOH A 34 334 84 HOH HOH . 
H 4 HOH A 35 335 17 HOH HOH . 
H 4 HOH A 36 336 119 HOH HOH . 
H 4 HOH A 37 337 171 HOH HOH . 
H 4 HOH A 38 338 40 HOH HOH . 
H 4 HOH A 39 339 232 HOH HOH . 
H 4 HOH A 40 340 218 HOH HOH . 
H 4 HOH A 41 341 201 HOH HOH . 
H 4 HOH A 42 342 93 HOH HOH . 
H 4 HOH A 43 343 157 HOH HOH . 
H 4 HOH A 44 344 212 HOH HOH . 
H 4 HOH A 45 345 217 HOH HOH . 
H 4 HOH A 46 346 20 HOH HOH . 
H 4 HOH A 47 347 38 HOH HOH . 
H 4 HOH A 48 348 11 HOH HOH . 
H 4 HOH A 49 349 69 HOH HOH . 
H 4 HOH A 50 350 46 HOH HOH . 
H 4 HOH A 51 351 82 HOH HOH . 
H 4 HOH A 52 352 106 HOH HOH . 
H 4 HOH A 53 353 44 HOH HOH . 
H 4 HOH A 54 354 57 HOH HOH . 
H 4 HOH A 55 355 34 HOH HOH . 
H 4 HOH A 56 356 116 HOH HOH . 
H 4 HOH A 57 357 51 HOH HOH . 
H 4 HOH A 58 358 81 HOH HOH . 
H 4 HOH A 59 359 131 HOH HOH . 
H 4 HOH A 60 360 94 HOH HOH . 
H 4 HOH A 61 361 27 HOH HOH . 
H 4 HOH A 62 362 41 HOH HOH . 
H 4 HOH A 63 363 43 HOH HOH . 
H 4 HOH A 64 364 96 HOH HOH . 
H 4 HOH A 65 365 21 HOH HOH . 
H 4 HOH A 66 366 88 HOH HOH . 
H 4 HOH A 67 367 102 HOH HOH . 
H 4 HOH A 68 368 26 HOH HOH . 
H 4 HOH A 69 369 32 HOH HOH . 
H 4 HOH A 70 370 211 HOH HOH . 
H 4 HOH A 71 371 85 HOH HOH . 
H 4 HOH A 72 372 73 HOH HOH . 
H 4 HOH A 73 373 144 HOH HOH . 
H 4 HOH A 74 374 120 HOH HOH . 
H 4 HOH A 75 375 3 HOH HOH . 
H 4 HOH A 76 376 130 HOH HOH . 
H 4 HOH A 77 377 110 HOH HOH . 
H 4 HOH A 78 378 18 HOH HOH . 
H 4 HOH A 79 379 135 HOH HOH . 
H 4 HOH A 80 380 19 HOH HOH . 
H 4 HOH A 81 381 129 HOH HOH . 
H 4 HOH A 82 382 90 HOH HOH . 
H 4 HOH A 83 383 68 HOH HOH . 
H 4 HOH A 84 384 162 HOH HOH . 
H 4 HOH A 85 385 70 HOH HOH . 
H 4 HOH A 86 386 173 HOH HOH . 
H 4 HOH A 87 387 199 HOH HOH . 
H 4 HOH A 88 388 167 HOH HOH . 
H 4 HOH A 89 389 95 HOH HOH . 
H 4 HOH A 90 390 10 HOH HOH . 
H 4 HOH A 91 391 15 HOH HOH . 
H 4 HOH A 92 392 54 HOH HOH . 
H 4 HOH A 93 393 226 HOH HOH . 
H 4 HOH A 94 394 169 HOH HOH . 
H 4 HOH A 95 395 108 HOH HOH . 
H 4 HOH A 96 396 65 HOH HOH . 
H 4 HOH A 97 397 147 HOH HOH . 
H 4 HOH A 98 398 207 HOH HOH . 
H 4 HOH A 99 399 231 HOH HOH . 
H 4 HOH A 100 400 118 HOH HOH . 
H 4 HOH A 101 401 56 HOH HOH . 
H 4 HOH A 102 402 206 HOH HOH . 
H 4 HOH A 103 403 214 HOH HOH . 
H 4 HOH A 104 404 71 HOH HOH . 
H 4 HOH A 105 405 140 HOH HOH . 
H 4 HOH A 106 406 86 HOH HOH . 
H 4 HOH A 107 407 227 HOH HOH . 
H 4 HOH A 108 408 79 HOH HOH . 
H 4 HOH A 109 409 115 HOH HOH . 
H 4 HOH A 110 410 197 HOH HOH . 
H 4 HOH A 111 411 23 HOH HOH . 
H 4 HOH A 112 412 159 HOH HOH . 
H 4 HOH A 113 413 64 HOH HOH . 
H 4 HOH A 114 414 233 HOH HOH . 
H 4 HOH A 115 415 177 HOH HOH . 
H 4 HOH A 116 416 223 HOH HOH . 
H 4 HOH A 117 417 220 HOH HOH . 
H 4 HOH A 118 418 168 HOH HOH . 
H 4 HOH A 119 419 184 HOH HOH . 
H 4 HOH A 120 420 175 HOH HOH . 
H 4 HOH A 121 421 180 HOH HOH . 
H 4 HOH A 122 422 188 HOH HOH . 
H 4 HOH A 123 423 37 HOH HOH . 
H 4 HOH A 124 424 204 HOH HOH . 
H 4 HOH A 125 425 229 HOH HOH . 
H 4 HOH A 126 426 200 HOH HOH . 
H 4 HOH A 127 427 98 HOH HOH . 
H 4 HOH A 128 428 78 HOH HOH . 
H 4 HOH A 129 429 219 HOH HOH . 
H 4 HOH A 130 430 50 HOH HOH . 
H 4 HOH A 131 431 58 HOH HOH . 
H 4 HOH A 132 432 47 HOH HOH . 
H 4 HOH A 133 433 235 HOH HOH . 
H 4 HOH A 134 434 77 HOH HOH . 
H 4 HOH A 135 435 198 HOH HOH . 
H 4 HOH A 136 436 138 HOH HOH . 
I 4 HOH B 1 401 121 HOH HOH . 
I 4 HOH B 2 402 154 HOH HOH . 
I 4 HOH B 3 403 24 HOH HOH . 
I 4 HOH B 4 404 170 HOH HOH . 
I 4 HOH B 5 405 128 HOH HOH . 
I 4 HOH B 6 406 109 HOH HOH . 
I 4 HOH B 7 407 7 HOH HOH . 
I 4 HOH B 8 408 192 HOH HOH . 
I 4 HOH B 9 409 210 HOH HOH . 
I 4 HOH B 10 410 48 HOH HOH . 
I 4 HOH B 11 411 126 HOH HOH . 
I 4 HOH B 12 412 178 HOH HOH . 
I 4 HOH B 13 413 149 HOH HOH . 
I 4 HOH B 14 414 28 HOH HOH . 
I 4 HOH B 15 415 1 HOH HOH . 
I 4 HOH B 16 416 99 HOH HOH . 
I 4 HOH B 17 417 80 HOH HOH . 
I 4 HOH B 18 418 104 HOH HOH . 
I 4 HOH B 19 419 36 HOH HOH . 
I 4 HOH B 20 420 225 HOH HOH . 
I 4 HOH B 21 421 53 HOH HOH . 
I 4 HOH B 22 422 22 HOH HOH . 
I 4 HOH B 23 423 75 HOH HOH . 
I 4 HOH B 24 424 35 HOH HOH . 
I 4 HOH B 25 425 55 HOH HOH . 
I 4 HOH B 26 426 42 HOH HOH . 
I 4 HOH B 27 427 62 HOH HOH . 
I 4 HOH B 28 428 179 HOH HOH . 
I 4 HOH B 29 429 146 HOH HOH . 
I 4 HOH B 30 430 156 HOH HOH . 
I 4 HOH B 31 431 114 HOH HOH . 
I 4 HOH B 32 432 6 HOH HOH . 
I 4 HOH B 33 433 123 HOH HOH . 
I 4 HOH B 34 434 4 HOH HOH . 
I 4 HOH B 35 435 61 HOH HOH . 
I 4 HOH B 36 436 97 HOH HOH . 
I 4 HOH B 37 437 60 HOH HOH . 
I 4 HOH B 38 438 158 HOH HOH . 
I 4 HOH B 39 439 113 HOH HOH . 
I 4 HOH B 40 440 14 HOH HOH . 
I 4 HOH B 41 441 230 HOH HOH . 
I 4 HOH B 42 442 2 HOH HOH . 
I 4 HOH B 43 443 9 HOH HOH . 
I 4 HOH B 44 444 33 HOH HOH . 
I 4 HOH B 45 445 224 HOH HOH . 
I 4 HOH B 46 446 228 HOH HOH . 
I 4 HOH B 47 447 52 HOH HOH . 
I 4 HOH B 48 448 5 HOH HOH . 
I 4 HOH B 49 449 205 HOH HOH . 
I 4 HOH B 50 450 25 HOH HOH . 
I 4 HOH B 51 451 66 HOH HOH . 
I 4 HOH B 52 452 222 HOH HOH . 
I 4 HOH B 53 453 215 HOH HOH . 
I 4 HOH B 54 454 29 HOH HOH . 
I 4 HOH B 55 455 216 HOH HOH . 
I 4 HOH B 56 456 234 HOH HOH . 
I 4 HOH B 57 457 153 HOH HOH . 
I 4 HOH B 58 458 141 HOH HOH . 
I 4 HOH B 59 459 196 HOH HOH . 
I 4 HOH B 60 460 195 HOH HOH . 
I 4 HOH B 61 461 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . C 3 37.582 35.223 4.088 1 35.91 ? C1 BEN 201 A 1 
HETATM 2 C C2 BEN . . . C 3 38.107 34.202 3.311 1 38.92 ? C2 BEN 201 A 1 
HETATM 3 C C3 BEN . . . C 3 39.429 33.82 3.474 1 40.56 ? C3 BEN 201 A 1 
HETATM 4 C C4 BEN . . . C 3 40.219 34.462 4.415 1 42.54 ? C4 BEN 201 A 1 
HETATM 5 C C5 BEN . . . C 3 39.694 35.483 5.19 1 32.59 ? C5 BEN 201 A 1 
HETATM 6 C C6 BEN . . . C 3 38.374 35.869 5.026 1 31.22 ? C6 BEN 201 A 1 
HETATM 7 C C BEN . . . C 3 36.13 35.648 3.91 1 41.05 ? C BEN 201 A 1 
HETATM 8 N N1 BEN . . . C 3 35.328 34.883 3.327 1 47.77 ? N1 BEN 201 A 1 
HETATM 9 N N2 BEN . . . C 3 35.691 36.931 4.421 1 39.68 ? N2 BEN 201 A 1 
HETATM 10 H H2 BEN . . . C 3 37.573 33.773 2.682 1 46.7 ? H2 BEN 201 A 1 
HETATM 11 H H3 BEN . . . C 3 39.785 33.134 2.956 1 48.68 ? H3 BEN 201 A 1 
HETATM 12 H H4 BEN . . . C 3 41.106 34.207 4.526 1 51.05 ? H4 BEN 201 A 1 
HETATM 13 H H5 BEN . . . C 3 40.229 35.912 5.819 1 39.11 ? H5 BEN 201 A 1 
HETATM 14 H H6 BEN . . . C 3 38.019 36.553 5.547 1 37.47 ? H6 BEN 201 A 1 
HETATM 15 H HN21 BEN . . . C 3 34.872 37.175 4.323 1 47.62 ? HN21 BEN 201 A 1 
HETATM 16 H HN22 BEN . . . C 3 36.249 37.448 4.82 1 47.62 ? HN22 BEN 201 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#