data_5C58
#
_model_server_result.job_id            QGGSkY9IUXpwCW_vMwkkCg 
_model_server_result.datetime_utc      '2024-11-15 09:48:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":200}' 
#
_entry.id    5C58 
#
_exptl.entry_id    5C58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C58 
_cell.length_a            101.971 
_cell.length_b            114.619 
_cell.length_c            260.757 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 538 A CYS 538 1_555 A SG CYS 546 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 715 A CYS 715 1_555 A SG CYS 750 A CYS 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 B NE2 HIS 50 B HIS 32 1_555 C FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 B OH TYR 93 B TYR 75 1_555 C FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5C58 
_atom_sites.fract_transf_matrix[1][1]    0.009807 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           HEM 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      200 
_pdbx_nonpoly_scheme.auth_seq_num     200 
_pdbx_nonpoly_scheme.pdb_mon_id       HEM 
_pdbx_nonpoly_scheme.auth_mon_id      HEM 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 -20.725 13.92 12.015 1 183.96 ? CHA HEM 200 B 1 
HETATM 2 C CHB HEM . . . C 3 -24.01 15.783 15.052 1 170.56 ? CHB HEM 200 B 1 
HETATM 3 C CHC HEM . . . C 3 -27.55 14.939 11.85 1 161.92 ? CHC HEM 200 B 1 
HETATM 4 C CHD HEM . . . C 3 -24.307 12.976 8.8 1 164.1 ? CHD HEM 200 B 1 
HETATM 5 C C1A HEM . . . C 3 -21.307 14.491 13.123 1 179.92 ? C1A HEM 200 B 1 
HETATM 6 C C2A HEM . . . C 3 -20.603 14.881 14.332 1 174.02 ? C2A HEM 200 B 1 
HETATM 7 C C3A HEM . . . C 3 -21.524 15.398 15.172 1 177.28 ? C3A HEM 200 B 1 
HETATM 8 C C4A HEM . . . C 3 -22.817 15.342 14.517 1 179.34 ? C4A HEM 200 B 1 
HETATM 9 C CMA HEM . . . C 3 -21.36 15.959 16.601 1 178.55 ? CMA HEM 200 B 1 
HETATM 10 C CAA HEM . . . C 3 -19.068 14.661 14.48 1 169.66 ? CAA HEM 200 B 1 
HETATM 11 C CBA HEM . . . C 3 -18.322 15.386 15.601 1 166.18 ? CBA HEM 200 B 1 
HETATM 12 C CGA HEM . . . C 3 -18.007 16.803 15.198 1 166.31 ? CGA HEM 200 B 1 
HETATM 13 O O1A HEM . . . C 3 -18.518 17.264 14.145 1 175.37 ? O1A HEM 200 B 1 
HETATM 14 O O2A HEM . . . C 3 -17.241 17.474 15.937 1 154.13 ? O2A HEM 200 B 1 
HETATM 15 C C1B HEM . . . C 3 -25.254 15.735 14.458 1 162.36 ? C1B HEM 200 B 1 
HETATM 16 C C2B HEM . . . C 3 -26.494 16.212 15.037 1 149.13 ? C2B HEM 200 B 1 
HETATM 17 C C3B HEM . . . C 3 -27.483 15.989 14.169 1 147.37 ? C3B HEM 200 B 1 
HETATM 18 C C4B HEM . . . C 3 -26.902 15.352 12.994 1 157.31 ? C4B HEM 200 B 1 
HETATM 19 C CMB HEM . . . C 3 -26.652 16.873 16.424 1 134.03 ? CMB HEM 200 B 1 
HETATM 20 C CAB HEM . . . C 3 -28.96 16.37 14.44 1 135.15 ? CAB HEM 200 B 1 
HETATM 21 C CBB HEM . . . C 3 -29.949 16.114 13.579 1 112.74 ? CBB HEM 200 B 1 
HETATM 22 C C1C HEM . . . C 3 -26.98 14.334 10.75 1 162.28 ? C1C HEM 200 B 1 
HETATM 23 C C2C HEM . . . C 3 -27.694 13.909 9.569 1 159.68 ? C2C HEM 200 B 1 
HETATM 24 C C3C HEM . . . C 3 -26.825 13.365 8.717 1 160.39 ? C3C HEM 200 B 1 
HETATM 25 C C4C HEM . . . C 3 -25.502 13.426 9.328 1 161.97 ? C4C HEM 200 B 1 
HETATM 26 C CMC HEM . . . C 3 -29.212 14.054 9.335 1 155.59 ? CMC HEM 200 B 1 
HETATM 27 C CAC HEM . . . C 3 -27.239 12.794 7.339 1 159.24 ? CAC HEM 200 B 1 
HETATM 28 C CBC HEM . . . C 3 -26.403 12.115 6.549 1 158.94 ? CBC HEM 200 B 1 
HETATM 29 C C1D HEM . . . C 3 -23.051 13.036 9.37 1 164.18 ? C1D HEM 200 B 1 
HETATM 30 C C2D HEM . . . C 3 -21.838 12.54 8.757 1 166.05 ? C2D HEM 200 B 1 
HETATM 31 C C3D HEM . . . C 3 -20.718 12.833 9.763 1 167.17 ? C3D HEM 200 B 1 
HETATM 32 C C4D HEM . . . C 3 -21.368 13.477 10.881 1 176.59 ? C4D HEM 200 B 1 
HETATM 33 C CMD HEM . . . C 3 -21.703 11.852 7.382 1 168.98 ? CMD HEM 200 B 1 
HETATM 34 C CAD HEM . . . C 3 -19.214 12.513 9.622 1 149.86 ? CAD HEM 200 B 1 
HETATM 35 C CBD HEM . . . C 3 -18.599 13.395 8.54 1 144.39 ? CBD HEM 200 B 1 
HETATM 36 C CGD HEM . . . C 3 -17.117 13.142 8.479 1 148.54 ? CGD HEM 200 B 1 
HETATM 37 O O1D HEM . . . C 3 -16.638 12.218 9.186 1 146.41 ? O1D HEM 200 B 1 
HETATM 38 O O2D HEM . . . C 3 -16.414 13.864 7.726 1 151.03 ? O2D HEM 200 B 1 
HETATM 39 N NA HEM . . . C 3 -22.646 14.79 13.266 1 183.35 ? NA HEM 200 B 1 
HETATM 40 N NB HEM . . . C 3 -25.543 15.213 13.212 1 163.89 ? NB HEM 200 B 1 
HETATM 41 N NC HEM . . . C 3 -25.645 14.025 10.568 1 164.06 ? NC HEM 200 B 1 
HETATM 42 N ND HEM . . . C 3 -22.731 13.578 10.612 1 170.41 ? ND HEM 200 B 1 
HETATM 43 FE FE HEM . . . C 3 -24.13 14.419 11.89 1 129 ? FE HEM 200 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#