data_5C5B # _model_server_result.job_id kgqxYz66RlTtYNV5jJiUdw _model_server_result.datetime_utc '2024-11-22 22:07:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5C5B # _exptl.entry_id 5C5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.65 _cell.angle_gamma 90 _cell.entry_id 5C5B _cell.length_a 146.924 _cell.length_b 88.542 _cell.length_c 147.388 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5C5B _atom_sites.fract_transf_matrix[1][1] 0.006806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000315 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 4 GOL GOL . F 3 GOL B 1 401 1 GOL GOL . G 3 GOL D 1 401 3 GOL GOL . H 4 HOH A 1 501 43 HOH HOH . H 4 HOH A 2 502 20 HOH HOH . H 4 HOH A 3 503 1 HOH HOH . H 4 HOH A 4 504 22 HOH HOH . H 4 HOH A 5 505 55 HOH HOH . I 4 HOH B 1 501 6 HOH HOH . I 4 HOH B 2 502 35 HOH HOH . I 4 HOH B 3 503 14 HOH HOH . I 4 HOH B 4 504 4 HOH HOH . I 4 HOH B 5 505 30 HOH HOH . I 4 HOH B 6 506 25 HOH HOH . J 4 HOH C 1 401 5 HOH HOH . J 4 HOH C 2 402 56 HOH HOH . J 4 HOH C 3 403 52 HOH HOH . J 4 HOH C 4 404 10 HOH HOH . J 4 HOH C 5 405 53 HOH HOH . J 4 HOH C 6 406 23 HOH HOH . K 4 HOH D 1 501 41 HOH HOH . K 4 HOH D 2 502 57 HOH HOH . K 4 HOH D 3 503 54 HOH HOH . K 4 HOH D 4 504 18 HOH HOH . K 4 HOH D 5 505 48 HOH HOH . K 4 HOH D 6 506 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 47.284 -35.008 -19.033 1 64.04 ? C1 GOL 401 D 1 HETATM 2 O O1 GOL . . . G 3 48.673 -34.927 -18.807 1 70.75 ? O1 GOL 401 D 1 HETATM 3 C C2 GOL . . . G 3 47.029 -35.275 -20.511 1 76.33 ? C2 GOL 401 D 1 HETATM 4 O O2 GOL . . . G 3 46.902 -34.051 -21.199 1 83.41 ? O2 GOL 401 D 1 HETATM 5 C C3 GOL . . . G 3 45.751 -36.089 -20.672 1 82.6 ? C3 GOL 401 D 1 HETATM 6 O O3 GOL . . . G 3 45.892 -37.324 -20.008 1 87.79 ? O3 GOL 401 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #