data_5C5K # _model_server_result.job_id CfSUOuy91kHFGXu2s57mag _model_server_result.datetime_utc '2024-11-08 09:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 5C5K # _exptl.entry_id 5C5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C5K _cell.length_a 89.399 _cell.length_b 192.747 _cell.length_c 225.071 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 39 A CYS 24 1_555 E CBC BLA . A BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale2 B SG CYS 39 B CYS 24 1_555 H CBC BLA . B BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale3 C SG CYS 39 C CYS 24 1_555 I CBC BLA . C BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale4 D SG CYS 39 D CYS 24 1_555 K CBC BLA . D BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 100 n n CHA C4D BLA doub 101 z n CHA HHA BLA sing 102 n n NA C1A BLA sing 103 n y NA C4A BLA sing 104 n y NA HA BLA sing 105 n n C1A C2A BLA doub 106 n y C2A C3A BLA sing 107 n y C2A CAA BLA sing 108 n n C3A C4A BLA doub 109 n y C3A CMA BLA sing 110 n n C4A CHB BLA sing 111 n n CMA HMA1 BLA sing 112 n n CMA HMA2 BLA sing 113 n n CMA HMA3 BLA sing 114 n n CAA CBA BLA sing 115 n n CAA HAA1 BLA sing 116 n n CAA HAA2 BLA sing 117 n n CBA CGA BLA sing 118 n n CBA HBA1 BLA sing 119 n n CBA HBA2 BLA sing 120 n n CGA O1A BLA doub 121 n n CGA O2A BLA sing 122 n n O2A H2A BLA sing 123 n n CHB C1B BLA doub 124 z n CHB HHB BLA sing 125 n n NB C1B BLA sing 126 n n NB C4B BLA sing 127 n n NB HB BLA sing 128 n n C1B C2B BLA sing 129 n n C2B C3B BLA doub 130 n n C2B CMB BLA sing 131 n n C3B C4B BLA sing 132 n n C3B CAB BLA sing 133 n n C4B OB BLA doub 134 n n CMB HMB1 BLA sing 135 n n CMB HMB2 BLA sing 136 n n CMB HMB3 BLA sing 137 n n CAB CBB BLA doub 138 n n CAB HAB BLA sing 139 n n CBB HBB1 BLA sing 140 n n CBB HBB2 BLA sing 141 n n NC C1C BLA sing 142 n n NC C4C BLA sing 143 n n NC HC BLA sing 144 n n C1C C2C BLA sing 145 n n C1C OC BLA doub 146 n n C2C C3C BLA doub 147 n n C2C CMC BLA sing 148 n n C3C C4C BLA sing 149 n n C3C CAC BLA sing 150 n n C4C CHD BLA doub 151 z n CMC HMC1 BLA sing 152 n n CMC HMC2 BLA sing 153 n n CMC HMC3 BLA sing 154 n n CAC CBC BLA doub 155 n n CAC HAC BLA sing 156 n n CBC HBC1 BLA sing 157 n n CBC HBC2 BLA sing 158 n n CHD C1D BLA sing 159 n n CHD HHD BLA sing 160 n n ND C1D BLA doub 161 n n ND C4D BLA sing 162 n n C1D C2D BLA sing 163 n n C2D C3D BLA doub 164 n n C2D CMD BLA sing 165 n n C3D C4D BLA sing 166 n n C3D CAD BLA sing 167 n n CMD HMD1 BLA sing 168 n n CMD HMD2 BLA sing 169 n n CMD HMD3 BLA sing 170 n n CAD CBD BLA sing 171 n n CAD HAD1 BLA sing 172 n n CAD HAD2 BLA sing 173 n n CBD CGD BLA sing 174 n n CBD HBD1 BLA sing 175 n n CBD HBD2 BLA sing 176 n n CGD O1D BLA doub 177 n n CGD O2D BLA sing 178 n n O2D H2D BLA sing 179 n n # _atom_sites.entry_id 5C5K _atom_sites.fract_transf_matrix[1][1] 0.011186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BLA A 1 601 601 BLA BLA . F 3 EDO A 1 602 602 EDO EDO . G 4 ACT A 1 603 603 ACT ACT . H 2 BLA B 1 601 602 BLA BLA . I 2 BLA C 1 601 601 BLA BLA . J 5 BGC C 1 602 602 BGC GLC . K 2 BLA D 1 601 601 BLA BLA . L 6 HOH A 1 701 701 HOH HOH . L 6 HOH A 2 702 702 HOH HOH . L 6 HOH A 3 703 707 HOH HOH . L 6 HOH A 4 704 705 HOH HOH . L 6 HOH A 5 705 703 HOH HOH . L 6 HOH A 6 706 706 HOH HOH . L 6 HOH A 7 707 704 HOH HOH . L 6 HOH A 8 708 709 HOH HOH . L 6 HOH A 9 709 710 HOH HOH . L 6 HOH A 10 710 708 HOH HOH . M 6 HOH B 1 701 702 HOH HOH . M 6 HOH B 2 702 701 HOH HOH . M 6 HOH B 3 703 704 HOH HOH . M 6 HOH B 4 704 705 HOH HOH . M 6 HOH B 5 705 706 HOH HOH . M 6 HOH B 6 706 707 HOH HOH . N 6 HOH C 1 701 701 HOH HOH . O 6 HOH D 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . K 2 -5.509 -25.028 -69.31 1 168.45 ? CHA BLA 601 D 1 HETATM 2 N NA BLA . . . K 2 -4.105 -26.619 -68.12 1 173.69 1 NA BLA 601 D 1 HETATM 3 C C1A BLA . . . K 2 -5.009 -25.622 -68.159 1 173.01 ? C1A BLA 601 D 1 HETATM 4 C C2A BLA . . . K 2 -5.352 -25.302 -66.841 1 169.75 ? C2A BLA 601 D 1 HETATM 5 C C3A BLA . . . K 2 -4.612 -26.144 -66.011 1 167.14 ? C3A BLA 601 D 1 HETATM 6 C C4A BLA . . . K 2 -3.844 -26.964 -66.842 1 182.79 ? C4A BLA 601 D 1 HETATM 7 C CMA BLA . . . K 2 -4.65 -26.16 -64.519 1 161.56 ? CMA BLA 601 D 1 HETATM 8 C CAA BLA . . . K 2 -6.338 -24.229 -66.396 1 171.38 ? CAA BLA 601 D 1 HETATM 9 C CBA BLA . . . K 2 -7.795 -24.45 -66.62 1 181.23 ? CBA BLA 601 D 1 HETATM 10 C CGA BLA . . . K 2 -8.445 -25.597 -65.929 1 195.94 ? CGA BLA 601 D 1 HETATM 11 O O1A BLA . . . K 2 -8.516 -25.616 -64.673 1 200.72 ? O1A BLA 601 D 1 HETATM 12 O O2A BLA . . . K 2 -8.926 -26.547 -66.603 1 202.73 1 O2A BLA 601 D 1 HETATM 13 C CHB BLA . . . K 2 -2.853 -28.051 -66.431 1 218.18 ? CHB BLA 601 D 1 HETATM 14 N NB BLA . . . K 2 -2.034 -29.455 -64.665 1 218.7 ? NB BLA 601 D 1 HETATM 15 C C1B BLA . . . K 2 -3.039 -29.007 -65.436 1 227.58 ? C1B BLA 601 D 1 HETATM 16 C C2B BLA . . . K 2 -4.206 -29.672 -65.05 1 232.45 ? C2B BLA 601 D 1 HETATM 17 C C3B BLA . . . K 2 -3.857 -30.534 -64.012 1 230.07 ? C3B BLA 601 D 1 HETATM 18 C C4B BLA . . . K 2 -2.496 -30.371 -63.796 1 215.25 ? C4B BLA 601 D 1 HETATM 19 C CMB BLA . . . K 2 -5.574 -29.518 -65.613 1 240.82 ? CMB BLA 601 D 1 HETATM 20 O OB BLA . . . K 2 -1.814 -30.953 -62.968 1 203.18 ? OB BLA 601 D 1 HETATM 21 C CAB BLA . . . K 2 -4.784 -31.444 -63.28 1 244.17 ? CAB BLA 601 D 1 HETATM 22 C CBB BLA . . . K 2 -4.364 -32.261 -62.276 1 252.5 ? CBB BLA 601 D 1 HETATM 23 N NC BLA . . . K 2 -2.653 -29.009 -71.063 1 165.18 ? NC BLA 601 D 1 HETATM 24 C C1C BLA . . . K 2 -1.954 -30.127 -70.794 1 172.09 ? C1C BLA 601 D 1 HETATM 25 C C2C BLA . . . K 2 -1.304 -30.541 -71.948 1 163.09 ? C2C BLA 601 D 1 HETATM 26 C C3C BLA . . . K 2 -1.633 -29.627 -72.944 1 157.54 ? C3C BLA 601 D 1 HETATM 27 C C4C BLA . . . K 2 -2.482 -28.681 -72.355 1 154.97 ? C4C BLA 601 D 1 HETATM 28 C CMC BLA . . . K 2 -0.421 -31.749 -72.069 1 162.01 ? CMC BLA 601 D 1 HETATM 29 O OC BLA . . . K 2 -1.898 -30.683 -69.717 1 180.06 ? OC BLA 601 D 1 HETATM 30 C CAC BLA . . . K 2 -1.168 -29.657 -74.377 1 155.96 ? CAC BLA 601 D 1 HETATM 31 C CBC BLA . . . K 2 0.262 -29.331 -74.69 1 128.3 ? CBC BLA 601 D 1 HETATM 32 C CHD BLA . . . K 2 -3.048 -27.584 -72.992 1 143.38 ? CHD BLA 601 D 1 HETATM 33 N ND BLA . . . K 2 -4.14 -26.466 -70.932 1 153.48 ? ND BLA 601 D 1 HETATM 34 C C1D BLA . . . K 2 -3.974 -26.599 -72.272 1 144.83 ? C1D BLA 601 D 1 HETATM 35 C C2D BLA . . . K 2 -4.797 -25.669 -72.908 1 137.07 ? C2D BLA 601 D 1 HETATM 36 C C3D BLA . . . K 2 -5.476 -24.964 -71.905 1 140.59 ? C3D BLA 601 D 1 HETATM 37 C C4D BLA . . . K 2 -5.044 -25.485 -70.682 1 156.31 ? C4D BLA 601 D 1 HETATM 38 C CMD BLA . . . K 2 -4.922 -25.472 -74.386 1 130.6 ? CMD BLA 601 D 1 HETATM 39 C CAD BLA . . . K 2 -6.479 -23.85 -72.106 1 137.91 ? CAD BLA 601 D 1 HETATM 40 C CBD BLA . . . K 2 -7.883 -24.21 -72.45 1 152.2 ? CBD BLA 601 D 1 HETATM 41 C CGD BLA . . . K 2 -8.919 -23.165 -72.269 1 166.96 ? CGD BLA 601 D 1 HETATM 42 O O1D BLA . . . K 2 -9.42 -22.594 -73.273 1 164.2 ? O1D BLA 601 D 1 HETATM 43 O O2D BLA . . . K 2 -9.294 -22.849 -71.117 1 176.64 1 O2D BLA 601 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #