data_5C5K
#
_model_server_result.job_id            KQ7Lu52cWVjSL6BAiMvSGg 
_model_server_result.datetime_utc      '2024-11-08 10:02:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5c5k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    5C5K 
#
_exptl.entry_id    5C5K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5C5K 
_cell.length_a            89.399 
_cell.length_b            192.747 
_cell.length_c            225.071 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5C5K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 39 A CYS 24 1_555 E CBC BLA . A BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale2 B SG CYS 39 B CYS 24 1_555 H CBC BLA . B BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale3 C SG CYS 39 C CYS 24 1_555 I CBC BLA . C BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale4 D SG CYS 39 D CYS 24 1_555 K CBC BLA . D BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 193 n n 
C1 C2 EDO sing 194 n n 
C1 H11 EDO sing 195 n n 
C1 H12 EDO sing 196 n n 
O1 HO1 EDO sing 197 n n 
C2 O2 EDO sing 198 n n 
C2 H21 EDO sing 199 n n 
C2 H22 EDO sing 200 n n 
O2 HO2 EDO sing 201 n n 
#
_atom_sites.entry_id                     5C5K 
_atom_sites.fract_transf_matrix[1][1]    0.011186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005188 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004443 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BLA A 1 601 601 BLA BLA . 
F 3 EDO A 1 602 602 EDO EDO . 
G 4 ACT A 1 603 603 ACT ACT . 
H 2 BLA B 1 601 602 BLA BLA . 
I 2 BLA C 1 601 601 BLA BLA . 
J 5 BGC C 1 602 602 BGC GLC . 
K 2 BLA D 1 601 601 BLA BLA . 
L 6 HOH A 1 701 701 HOH HOH . 
L 6 HOH A 2 702 702 HOH HOH . 
L 6 HOH A 3 703 707 HOH HOH . 
L 6 HOH A 4 704 705 HOH HOH . 
L 6 HOH A 5 705 703 HOH HOH . 
L 6 HOH A 6 706 706 HOH HOH . 
L 6 HOH A 7 707 704 HOH HOH . 
L 6 HOH A 8 708 709 HOH HOH . 
L 6 HOH A 9 709 710 HOH HOH . 
L 6 HOH A 10 710 708 HOH HOH . 
M 6 HOH B 1 701 702 HOH HOH . 
M 6 HOH B 2 702 701 HOH HOH . 
M 6 HOH B 3 703 704 HOH HOH . 
M 6 HOH B 4 704 705 HOH HOH . 
M 6 HOH B 5 705 706 HOH HOH . 
M 6 HOH B 6 706 707 HOH HOH . 
N 6 HOH C 1 701 701 HOH HOH . 
O 6 HOH D 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 27.424 -34.63 10.003 1 130.85 ? C1 EDO 602 A 1 
HETATM 2 O O1 EDO . . . F 3 26.193 -35.049 10.605 1 143.11 ? O1 EDO 602 A 1 
HETATM 3 C C2 EDO . . . F 3 28.308 -35.846 9.747 1 108.92 ? C2 EDO 602 A 1 
HETATM 4 O O2 EDO . . . F 3 27.622 -36.76 8.884 1 101.57 ? O2 EDO 602 A 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#