data_5C5K # _model_server_result.job_id 9IqaL3nYoYKK-iD5fJJgNQ _model_server_result.datetime_utc '2024-11-08 09:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 5C5K # _exptl.entry_id 5C5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C5K _cell.length_a 89.399 _cell.length_b 192.747 _cell.length_c 225.071 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 39 A CYS 24 1_555 E CBC BLA . A BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale2 B SG CYS 39 B CYS 24 1_555 H CBC BLA . B BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale3 C SG CYS 39 C CYS 24 1_555 I CBC BLA . C BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale4 D SG CYS 39 D CYS 24 1_555 K CBC BLA . D BLA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 76 n n C2 C1 BGC sing 77 n n C2 O2 BGC sing 78 n n C2 H2 BGC sing 79 n n C3 C4 BGC sing 80 n n C3 O3 BGC sing 81 n n C3 H3 BGC sing 82 n n C4 C5 BGC sing 83 n n C4 O4 BGC sing 84 n n C4 H4 BGC sing 85 n n C5 C6 BGC sing 86 n n C5 O5 BGC sing 87 n n C5 H5 BGC sing 88 n n C6 O6 BGC sing 89 n n C6 H61 BGC sing 90 n n C6 H62 BGC sing 91 n n C1 O1 BGC sing 92 n n C1 O5 BGC sing 93 n n C1 H1 BGC sing 94 n n O1 HO1 BGC sing 95 n n O2 HO2 BGC sing 96 n n O3 HO3 BGC sing 97 n n O4 HO4 BGC sing 98 n n O6 HO6 BGC sing 99 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5C5K _atom_sites.fract_transf_matrix[1][1] 0.011186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BLA A 1 601 601 BLA BLA . F 3 EDO A 1 602 602 EDO EDO . G 4 ACT A 1 603 603 ACT ACT . H 2 BLA B 1 601 602 BLA BLA . I 2 BLA C 1 601 601 BLA BLA . J 5 BGC C 1 602 602 BGC GLC . K 2 BLA D 1 601 601 BLA BLA . L 6 HOH A 1 701 701 HOH HOH . L 6 HOH A 2 702 702 HOH HOH . L 6 HOH A 3 703 707 HOH HOH . L 6 HOH A 4 704 705 HOH HOH . L 6 HOH A 5 705 703 HOH HOH . L 6 HOH A 6 706 706 HOH HOH . L 6 HOH A 7 707 704 HOH HOH . L 6 HOH A 8 708 709 HOH HOH . L 6 HOH A 9 709 710 HOH HOH . L 6 HOH A 10 710 708 HOH HOH . M 6 HOH B 1 701 702 HOH HOH . M 6 HOH B 2 702 701 HOH HOH . M 6 HOH B 3 703 704 HOH HOH . M 6 HOH B 4 704 705 HOH HOH . M 6 HOH B 5 705 706 HOH HOH . M 6 HOH B 6 706 707 HOH HOH . N 6 HOH C 1 701 701 HOH HOH . O 6 HOH D 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . J 5 32.709 33.654 -71.214 1 217.38 ? C2 BGC 602 C 1 HETATM 2 C C3 BGC . . . J 5 31.967 34.588 -72.156 1 210.5 ? C3 BGC 602 C 1 HETATM 3 C C4 BGC . . . J 5 30.824 35.276 -71.417 1 202.39 ? C4 BGC 602 C 1 HETATM 4 C C5 BGC . . . J 5 31.293 35.923 -70.118 1 182.97 ? C5 BGC 602 C 1 HETATM 5 C C6 BGC . . . J 5 30.123 36.507 -69.339 1 150.14 ? C6 BGC 602 C 1 HETATM 6 C C1 BGC . . . J 5 33.095 34.4 -69.938 1 217.57 ? C1 BGC 602 C 1 HETATM 7 O O1 BGC . . . J 5 33.693 33.494 -69.039 1 229.66 ? O1 BGC 602 C 1 HETATM 8 O O2 BGC . . . J 5 33.831 33.104 -71.878 1 225.56 ? O2 BGC 602 C 1 HETATM 9 O O3 BGC . . . J 5 31.437 33.832 -73.215 1 209.61 ? O3 BGC 602 C 1 HETATM 10 O O4 BGC . . . J 5 30.248 36.252 -72.25 1 208.49 ? O4 BGC 602 C 1 HETATM 11 O O5 BGC . . . J 5 31.952 34.961 -69.321 1 198.65 ? O5 BGC 602 C 1 HETATM 12 O O6 BGC . . . J 5 30.514 36.601 -67.988 1 139.38 ? O6 BGC 602 C 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #