data_5C5M # _model_server_result.job_id QJUH9SGCIRu4nZjtrlH0SQ _model_server_result.datetime_utc '2024-10-11 10:21:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5C5M # _exptl.entry_id 5C5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94 _cell.angle_gamma 90 _cell.entry_id 5C5M _cell.length_a 30.959 _cell.length_b 60.396 _cell.length_c 38.232 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc4 A OE2 GLU 43 A GLU 43 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc5 B CA CA . A CA 201 1_555 D O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 B CA CA . A CA 201 1_555 D O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5C5M _atom_sites.fract_transf_matrix[1][1] 0.032301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 1 CA CA . C 3 THP A 1 202 1 THP THP . D 4 HOH A 1 301 127 HOH HOH . D 4 HOH A 2 302 50 HOH HOH . D 4 HOH A 3 303 99 HOH HOH . D 4 HOH A 4 304 133 HOH HOH . D 4 HOH A 5 305 148 HOH HOH . D 4 HOH A 6 306 28 HOH HOH . D 4 HOH A 7 307 103 HOH HOH . D 4 HOH A 8 308 152 HOH HOH . D 4 HOH A 9 309 145 HOH HOH . D 4 HOH A 10 310 6 HOH HOH . D 4 HOH A 11 311 110 HOH HOH . D 4 HOH A 12 312 95 HOH HOH . D 4 HOH A 13 313 62 HOH HOH . D 4 HOH A 14 314 151 HOH HOH . D 4 HOH A 15 315 122 HOH HOH . D 4 HOH A 16 316 3 HOH HOH . D 4 HOH A 17 317 35 HOH HOH . D 4 HOH A 18 318 114 HOH HOH . D 4 HOH A 19 319 69 HOH HOH . D 4 HOH A 20 320 141 HOH HOH . D 4 HOH A 21 321 16 HOH HOH . D 4 HOH A 22 322 31 HOH HOH . D 4 HOH A 23 323 78 HOH HOH . D 4 HOH A 24 324 111 HOH HOH . D 4 HOH A 25 325 135 HOH HOH . D 4 HOH A 26 326 61 HOH HOH . D 4 HOH A 27 327 92 HOH HOH . D 4 HOH A 28 328 72 HOH HOH . D 4 HOH A 29 329 144 HOH HOH . D 4 HOH A 30 330 36 HOH HOH . D 4 HOH A 31 331 57 HOH HOH . D 4 HOH A 32 332 89 HOH HOH . D 4 HOH A 33 333 66 HOH HOH . D 4 HOH A 34 334 2 HOH HOH . D 4 HOH A 35 335 80 HOH HOH . D 4 HOH A 36 336 68 HOH HOH . D 4 HOH A 37 337 140 HOH HOH . D 4 HOH A 38 338 115 HOH HOH . D 4 HOH A 39 339 44 HOH HOH . D 4 HOH A 40 340 71 HOH HOH . D 4 HOH A 41 341 23 HOH HOH . D 4 HOH A 42 342 91 HOH HOH . D 4 HOH A 43 343 32 HOH HOH . D 4 HOH A 44 344 131 HOH HOH . D 4 HOH A 45 345 20 HOH HOH . D 4 HOH A 46 346 7 HOH HOH . D 4 HOH A 47 347 17 HOH HOH . D 4 HOH A 48 348 15 HOH HOH . D 4 HOH A 49 349 123 HOH HOH . D 4 HOH A 50 350 155 HOH HOH . D 4 HOH A 51 351 5 HOH HOH . D 4 HOH A 52 352 64 HOH HOH . D 4 HOH A 53 353 24 HOH HOH . D 4 HOH A 54 354 34 HOH HOH . D 4 HOH A 55 355 18 HOH HOH . D 4 HOH A 56 356 102 HOH HOH . D 4 HOH A 57 357 77 HOH HOH . D 4 HOH A 58 358 26 HOH HOH . D 4 HOH A 59 359 104 HOH HOH . D 4 HOH A 60 360 49 HOH HOH . D 4 HOH A 61 361 156 HOH HOH . D 4 HOH A 62 362 21 HOH HOH . D 4 HOH A 63 363 27 HOH HOH . D 4 HOH A 64 364 76 HOH HOH . D 4 HOH A 65 365 40 HOH HOH . D 4 HOH A 66 366 59 HOH HOH . D 4 HOH A 67 367 137 HOH HOH . D 4 HOH A 68 368 83 HOH HOH . D 4 HOH A 69 369 63 HOH HOH . D 4 HOH A 70 370 119 HOH HOH . D 4 HOH A 71 371 79 HOH HOH . D 4 HOH A 72 372 55 HOH HOH . D 4 HOH A 73 373 58 HOH HOH . D 4 HOH A 74 374 124 HOH HOH . D 4 HOH A 75 375 1 HOH HOH . D 4 HOH A 76 376 109 HOH HOH . D 4 HOH A 77 377 13 HOH HOH . D 4 HOH A 78 378 130 HOH HOH . D 4 HOH A 79 379 39 HOH HOH . D 4 HOH A 80 380 8 HOH HOH . D 4 HOH A 81 381 11 HOH HOH . D 4 HOH A 82 382 4 HOH HOH . D 4 HOH A 83 383 143 HOH HOH . D 4 HOH A 84 384 118 HOH HOH . D 4 HOH A 85 385 154 HOH HOH . D 4 HOH A 86 386 149 HOH HOH . D 4 HOH A 87 387 9 HOH HOH . D 4 HOH A 88 388 14 HOH HOH . D 4 HOH A 89 389 86 HOH HOH . D 4 HOH A 90 390 70 HOH HOH . D 4 HOH A 91 391 51 HOH HOH . D 4 HOH A 92 392 142 HOH HOH . D 4 HOH A 93 393 121 HOH HOH . D 4 HOH A 94 394 134 HOH HOH . D 4 HOH A 95 395 129 HOH HOH . D 4 HOH A 96 396 41 HOH HOH . D 4 HOH A 97 397 29 HOH HOH . D 4 HOH A 98 398 22 HOH HOH . D 4 HOH A 99 399 12 HOH HOH . D 4 HOH A 100 400 25 HOH HOH . D 4 HOH A 101 401 47 HOH HOH . D 4 HOH A 102 402 67 HOH HOH . D 4 HOH A 103 403 74 HOH HOH . D 4 HOH A 104 404 125 HOH HOH . D 4 HOH A 105 405 56 HOH HOH . D 4 HOH A 106 406 126 HOH HOH . D 4 HOH A 107 407 147 HOH HOH . D 4 HOH A 108 408 45 HOH HOH . D 4 HOH A 109 409 128 HOH HOH . D 4 HOH A 110 410 60 HOH HOH . D 4 HOH A 111 411 90 HOH HOH . D 4 HOH A 112 412 132 HOH HOH . D 4 HOH A 113 413 87 HOH HOH . D 4 HOH A 114 414 73 HOH HOH . D 4 HOH A 115 415 107 HOH HOH . D 4 HOH A 116 416 33 HOH HOH . D 4 HOH A 117 417 19 HOH HOH . D 4 HOH A 118 418 153 HOH HOH . D 4 HOH A 119 419 150 HOH HOH . D 4 HOH A 120 420 117 HOH HOH . D 4 HOH A 121 421 120 HOH HOH . D 4 HOH A 122 422 113 HOH HOH . D 4 HOH A 123 423 138 HOH HOH . D 4 HOH A 124 424 136 HOH HOH . D 4 HOH A 125 425 139 HOH HOH . D 4 HOH A 126 426 116 HOH HOH . D 4 HOH A 127 427 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.78 _atom_site.Cartn_y 11.178 _atom_site.Cartn_z 46.401 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #